data_4AM7 # _model_server_result.job_id m4IJqyk-_cn6kym5NWIMLQ _model_server_result.datetime_utc '2024-11-05 00:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4am7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1882}' # _entry.id 4AM7 # _exptl.entry_id 4AM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.37 _cell.angle_gamma 90 _cell.entry_id 4AM7 _cell.length_a 137.718 _cell.length_b 89.795 _cell.length_c 149.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4AM7 _atom_sites.fract_transf_matrix[1][1] 0.007261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1882 1882 ADP ADP . D 2 ADP B 1 1882 1882 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 -104.674 -0.491 -14.611 1 89.07 ? PB ADP 1882 A 1 HETATM 2 O O1B ADP . . . C 2 -105.869 -0.574 -15.579 1 83.04 ? O1B ADP 1882 A 1 HETATM 3 O O2B ADP . . . C 2 -104.91 -0.152 -13.116 1 87.96 ? O2B ADP 1882 A 1 HETATM 4 O O3B ADP . . . C 2 -103.388 0.175 -15.193 1 83.85 ? O3B ADP 1882 A 1 HETATM 5 P PA ADP . . . C 2 -105.817 -3.171 -14.498 1 90.13 ? PA ADP 1882 A 1 HETATM 6 O O1A ADP . . . C 2 -105.944 -4.211 -13.37 1 86.92 ? O1A ADP 1882 A 1 HETATM 7 O O2A ADP . . . C 2 -106.939 -2.244 -15.002 1 84.42 ? O2A ADP 1882 A 1 HETATM 8 O O3A ADP . . . C 2 -104.547 -2.111 -14.387 1 89.66 ? O3A ADP 1882 A 1 HETATM 9 O O5' ADP . . . C 2 -105.248 -4.208 -15.609 1 89.79 ? O5' ADP 1882 A 1 HETATM 10 C C5' ADP . . . C 2 -105.321 -5.624 -15.497 1 88.07 ? C5' ADP 1882 A 1 HETATM 11 C C4' ADP . . . C 2 -104.097 -6.221 -16.222 1 89.24 ? C4' ADP 1882 A 1 HETATM 12 O O4' ADP . . . C 2 -104.011 -7.626 -15.938 1 90.34 ? O4' ADP 1882 A 1 HETATM 13 C C3' ADP . . . C 2 -104.077 -6.168 -17.755 1 88.71 ? C3' ADP 1882 A 1 HETATM 14 O O3' ADP . . . C 2 -102.766 -5.742 -18.159 1 88.61 ? O3' ADP 1882 A 1 HETATM 15 C C2' ADP . . . C 2 -104.243 -7.601 -18.237 1 88.65 ? C2' ADP 1882 A 1 HETATM 16 O O2' ADP . . . C 2 -103.498 -7.804 -19.44 1 89.79 ? O2' ADP 1882 A 1 HETATM 17 C C1' ADP . . . C 2 -103.607 -8.364 -17.089 1 89.43 ? C1' ADP 1882 A 1 HETATM 18 N N9 ADP . . . C 2 -104.009 -9.778 -16.92 1 89.63 ? N9 ADP 1882 A 1 HETATM 19 C C8 ADP . . . C 2 -105.275 -10.233 -16.892 1 90.46 ? C8 ADP 1882 A 1 HETATM 20 N N7 ADP . . . C 2 -105.296 -11.59 -16.708 1 91.58 ? N7 ADP 1882 A 1 HETATM 21 C C5 ADP . . . C 2 -104.028 -11.996 -16.603 1 89.97 ? C5 ADP 1882 A 1 HETATM 22 C C6 ADP . . . C 2 -103.404 -13.293 -16.402 1 89.68 ? C6 ADP 1882 A 1 HETATM 23 N N6 ADP . . . C 2 -104.254 -14.334 -16.292 1 88.71 ? N6 ADP 1882 A 1 HETATM 24 N N1 ADP . . . C 2 -102.033 -13.351 -16.35 1 91.24 ? N1 ADP 1882 A 1 HETATM 25 C C2 ADP . . . C 2 -101.27 -12.224 -16.463 1 91.39 ? C2 ADP 1882 A 1 HETATM 26 N N3 ADP . . . C 2 -101.791 -10.978 -16.652 1 90.84 ? N3 ADP 1882 A 1 HETATM 27 C C4 ADP . . . C 2 -103.157 -10.811 -16.734 1 90.6 ? C4 ADP 1882 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #