data_4AMI # _model_server_result.job_id uH4lhrJRqp-zOoKpSaSE1g _model_server_result.datetime_utc '2024-11-08 07:13:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ami # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1360}' # _entry.id 4AMI # _exptl.entry_id 4AMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2S)-3-[[1-(1H-indol-3-yl)-2-methyl-propan-2-yl]amino]-2-oxidanyl-propoxy]benzenecarbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.78 _cell.angle_gamma 90 _cell.entry_id 4AMI _cell.length_a 89.844 _cell.length_b 60.677 _cell.length_c 107.818 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,J 1 1 B,E,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C22 H25 N3 O2' _chem_comp.formula_weight 363.453 _chem_comp.id G90 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2S)-3-[[1-(1H-indol-3-yl)-2-methyl-propan-2-yl]amino]-2-oxidanyl-propoxy]benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BUCINDOLOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C12 G90 trip 145 n n C12 C7 G90 sing 146 n n C7 C6 G90 sing 147 n y C7 C8 G90 doub 148 n y C6 C11 G90 doub 149 n y C6 O2 G90 sing 150 n n C11 C10 G90 sing 151 n y C10 C9 G90 doub 152 n y C9 C8 G90 sing 153 n y O2 C5 G90 sing 154 n n C5 C4 G90 sing 155 n n C4 O1 G90 sing 156 n n C4 C3 G90 sing 157 n n C3 N G90 sing 158 n n N CA G90 sing 159 n n CA C1 G90 sing 160 n n CA C2 G90 sing 161 n n CA CB G90 sing 162 n n CB CG G90 sing 163 n n CG CD2 G90 sing 164 n y CG CD1 G90 doub 165 n y CD2 CE3 G90 sing 166 n y CD2 CE2 G90 doub 167 n y CE3 CZ3 G90 doub 168 n y CZ3 CH2 G90 sing 169 n y CH2 CZ2 G90 doub 170 n y CZ2 CE2 G90 sing 171 n y CE2 NE1 G90 sing 172 n y NE1 CD1 G90 sing 173 n y C8 H8 G90 sing 174 n n C11 H11 G90 sing 175 n n C10 H10 G90 sing 176 n n C9 H9 G90 sing 177 n n C5 H51C G90 sing 178 n n C5 H52C G90 sing 179 n n C4 H4 G90 sing 180 n n O1 H1 G90 sing 181 n n C3 H31C G90 sing 182 n n C3 H32C G90 sing 183 n n N H G90 sing 184 n n C1 H11C G90 sing 185 n n C1 H12C G90 sing 186 n n C1 H13C G90 sing 187 n n C2 H21C G90 sing 188 n n C2 H22C G90 sing 189 n n C2 H23C G90 sing 190 n n CB HB1C G90 sing 191 n n CB HB2C G90 sing 192 n n CD1 HD1 G90 sing 193 n n CE3 HE3 G90 sing 194 n n CZ3 HZ3 G90 sing 195 n n CH2 HH2 G90 sing 196 n n CZ2 HZ2 G90 sing 197 n n NE1 HE1 G90 sing 198 n n # _atom_sites.entry_id 4AMI _atom_sites.fract_transf_matrix[1][1] 0.01113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G90 A 1 1359 1359 G90 G90 . D 3 2CV A 1 1360 1360 2CV 2CV . E 3 2CV B 1 1358 1358 2CV 2CV . F 3 2CV B 1 1359 1359 2CV 2CV . G 2 G90 B 1 1360 1360 G90 G90 . H 3 2CV B 1 1361 1361 2CV 2CV . I 3 2CV B 1 1362 1362 2CV 2CV . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . K 4 HOH B 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 G90 . . . G 2 6.868 -7.745 18.074 1 74.67 ? N1 G90 1360 B 1 HETATM 2 C C12 G90 . . . G 2 6.198 -7.795 19.012 1 67.87 ? C12 G90 1360 B 1 HETATM 3 C C7 G90 . . . G 2 5.422 -7.889 20.019 1 67.16 ? C7 G90 1360 B 1 HETATM 4 C C6 G90 . . . G 2 5.931 -8.379 21.326 1 67.29 ? C6 G90 1360 B 1 HETATM 5 C C11 G90 . . . G 2 5.038 -8.478 22.385 1 66.26 ? C11 G90 1360 B 1 HETATM 6 C C10 G90 . . . G 2 3.707 -8.11 22.212 1 65.77 ? C10 G90 1360 B 1 HETATM 7 C C9 G90 . . . G 2 3.232 -7.647 20.985 1 65.78 ? C9 G90 1360 B 1 HETATM 8 C C8 G90 . . . G 2 4.084 -7.534 19.889 1 67 ? C8 G90 1360 B 1 HETATM 9 O O2 G90 . . . G 2 7.238 -8.763 21.486 1 69.37 ? O2 G90 1360 B 1 HETATM 10 C C5 G90 . . . G 2 8.286 -7.883 21.889 1 68.96 ? C5 G90 1360 B 1 HETATM 11 C C4 G90 . . . G 2 9.637 -8.461 21.464 1 68.51 ? C4 G90 1360 B 1 HETATM 12 O O1 G90 . . . G 2 10.169 -9.314 22.483 1 63.53 ? O1 G90 1360 B 1 HETATM 13 C C3 G90 . . . G 2 9.483 -9.246 20.166 1 71.33 ? C3 G90 1360 B 1 HETATM 14 N N G90 . . . G 2 10.694 -10.01 19.881 1 71.54 ? N G90 1360 B 1 HETATM 15 C CA G90 . . . G 2 10.895 -10.701 18.618 1 70.89 ? CA G90 1360 B 1 HETATM 16 C C1 G90 . . . G 2 10.709 -9.707 17.47 1 69.39 ? C1 G90 1360 B 1 HETATM 17 C C2 G90 . . . G 2 9.89 -11.845 18.482 1 68.2 ? C2 G90 1360 B 1 HETATM 18 C CB G90 . . . G 2 12.325 -11.26 18.687 1 72.91 ? CB G90 1360 B 1 HETATM 19 C CG G90 . . . G 2 12.854 -11.791 17.368 1 75.34 ? CG G90 1360 B 1 HETATM 20 C CD2 G90 . . . G 2 13.65 -11.069 16.348 1 73.44 ? CD2 G90 1360 B 1 HETATM 21 C CE3 G90 . . . G 2 14.135 -9.771 16.271 1 72.39 ? CE3 G90 1360 B 1 HETATM 22 C CZ3 G90 . . . G 2 14.866 -9.414 15.136 1 73.09 ? CZ3 G90 1360 B 1 HETATM 23 C CH2 G90 . . . G 2 15.106 -10.329 14.104 1 72.6 ? CH2 G90 1360 B 1 HETATM 24 C CZ2 G90 . . . G 2 14.628 -11.639 14.16 1 73.39 ? CZ2 G90 1360 B 1 HETATM 25 C CE2 G90 . . . G 2 13.891 -12.044 15.268 1 74.14 ? CE2 G90 1360 B 1 HETATM 26 N NE1 G90 . . . G 2 13.298 -13.201 15.644 1 75.5 ? NE1 G90 1360 B 1 HETATM 27 C CD1 G90 . . . G 2 12.692 -13.076 16.856 1 75.49 ? CD1 G90 1360 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #