data_4AMJ
#
_model_server_result.job_id            VmoQHb2s4tfbfB1gULf73Q 
_model_server_result.datetime_utc      '2024-11-23 20:06:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4amj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1361}' 
#
_entry.id    4AMJ 
#
_exptl.entry_id    4AMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.17 
_cell.angle_gamma         90 
_cell.entry_id            4AMJ 
_cell.length_a            90.056 
_cell.length_b            62.196 
_cell.length_c            100.926 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,S 1 1 
B,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc1 A O CYS 162 A CYS 192 1_555 D NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc2 A O ASP 165 A ASP 195 1_555 D NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc3 A O CYS 168 A CYS 198 1_555 D NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc4 D NA NA . A NA 1360 1_555 S O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc5 D NA NA . A NA 1360 1_555 S O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc6 D NA NA . A NA 1360 1_555 S O HOH . A HOH 2028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc7 B O CYS 162 B CYS 192 1_555 O NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc8 B O ASP 165 B ASP 195 1_555 O NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc9 B O CYS 168 B CYS 198 1_555 O NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc10 O NA NA . B NA 1361 1_555 T O HOH . B HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc11 O NA NA . B NA 1361 1_555 T O HOH . B HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc12 O NA NA . B NA 1361 1_555 T O HOH . B HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4AMJ 
_atom_sites.fract_transf_matrix[1][1]    0.011104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00386 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CVD A 1 1359 1359 CVD CVD . 
D 3 NA A 1 1360 1360 NA NA . 
E 4 2CV A 1 1361 1361 2CV 2CV . 
F 4 2CV A 1 1362 1362 2CV 2CV . 
G 4 2CV A 1 1363 1363 2CV 2CV . 
H 4 2CV A 1 1364 1364 2CV 2CV . 
I 4 2CV A 1 1365 1365 2CV 2CV . 
J 4 2CV A 1 1366 1366 2CV 2CV . 
K 4 2CV A 1 1367 1367 2CV 2CV . 
L 4 2CV A 1 1368 1368 2CV 2CV . 
M 4 2CV B 1 1359 1359 2CV 2CV . 
N 2 CVD B 1 1360 1360 CVD CVD . 
O 3 NA B 1 1361 1361 NA NA . 
P 4 2CV B 1 1362 1362 2CV 2CV . 
Q 4 2CV B 1 1363 1363 2CV 2CV . 
R 4 2CV B 1 1364 1364 2CV 2CV . 
S 5 HOH A 1 2001 2001 HOH HOH . 
S 5 HOH A 2 2002 2002 HOH HOH . 
S 5 HOH A 3 2003 2003 HOH HOH . 
S 5 HOH A 4 2004 2004 HOH HOH . 
S 5 HOH A 5 2005 2005 HOH HOH . 
S 5 HOH A 6 2006 2006 HOH HOH . 
S 5 HOH A 7 2007 2007 HOH HOH . 
S 5 HOH A 8 2008 2008 HOH HOH . 
S 5 HOH A 9 2009 2009 HOH HOH . 
S 5 HOH A 10 2010 2010 HOH HOH . 
S 5 HOH A 11 2011 2011 HOH HOH . 
S 5 HOH A 12 2012 2012 HOH HOH . 
S 5 HOH A 13 2013 2013 HOH HOH . 
S 5 HOH A 14 2014 2014 HOH HOH . 
S 5 HOH A 15 2015 2015 HOH HOH . 
S 5 HOH A 16 2016 2016 HOH HOH . 
S 5 HOH A 17 2017 2017 HOH HOH . 
S 5 HOH A 18 2018 2018 HOH HOH . 
S 5 HOH A 19 2019 2019 HOH HOH . 
S 5 HOH A 20 2020 2020 HOH HOH . 
S 5 HOH A 21 2021 2021 HOH HOH . 
S 5 HOH A 22 2022 2022 HOH HOH . 
S 5 HOH A 23 2023 2023 HOH HOH . 
S 5 HOH A 24 2024 2024 HOH HOH . 
S 5 HOH A 25 2025 2025 HOH HOH . 
S 5 HOH A 26 2026 2026 HOH HOH . 
S 5 HOH A 27 2027 2027 HOH HOH . 
S 5 HOH A 28 2028 2028 HOH HOH . 
S 5 HOH A 29 2029 2029 HOH HOH . 
S 5 HOH A 30 2030 2030 HOH HOH . 
S 5 HOH A 31 2031 2031 HOH HOH . 
S 5 HOH A 32 2032 2032 HOH HOH . 
S 5 HOH A 33 2033 2033 HOH HOH . 
S 5 HOH A 34 2034 2034 HOH HOH . 
S 5 HOH A 35 2035 2035 HOH HOH . 
S 5 HOH A 36 2036 2036 HOH HOH . 
S 5 HOH A 37 2037 2037 HOH HOH . 
S 5 HOH A 38 2038 2038 HOH HOH . 
S 5 HOH A 39 2039 2039 HOH HOH . 
S 5 HOH A 40 2040 2040 HOH HOH . 
S 5 HOH A 41 2041 2041 HOH HOH . 
S 5 HOH A 42 2042 2042 HOH HOH . 
S 5 HOH A 43 2043 2043 HOH HOH . 
S 5 HOH A 44 2044 2044 HOH HOH . 
S 5 HOH A 45 2045 2045 HOH HOH . 
S 5 HOH A 46 2046 2046 HOH HOH . 
S 5 HOH A 47 2047 2047 HOH HOH . 
T 5 HOH B 1 2001 2001 HOH HOH . 
T 5 HOH B 2 2002 2002 HOH HOH . 
T 5 HOH B 3 2003 2003 HOH HOH . 
T 5 HOH B 4 2004 2004 HOH HOH . 
T 5 HOH B 5 2005 2005 HOH HOH . 
T 5 HOH B 6 2006 2006 HOH HOH . 
T 5 HOH B 7 2007 2007 HOH HOH . 
T 5 HOH B 8 2008 2008 HOH HOH . 
T 5 HOH B 9 2009 2009 HOH HOH . 
T 5 HOH B 10 2010 2010 HOH HOH . 
T 5 HOH B 11 2011 2011 HOH HOH . 
T 5 HOH B 12 2012 2012 HOH HOH . 
T 5 HOH B 13 2013 2013 HOH HOH . 
T 5 HOH B 14 2014 2014 HOH HOH . 
T 5 HOH B 15 2015 2015 HOH HOH . 
T 5 HOH B 16 2016 2016 HOH HOH . 
T 5 HOH B 17 2017 2017 HOH HOH . 
T 5 HOH B 18 2018 2018 HOH HOH . 
T 5 HOH B 19 2019 2019 HOH HOH . 
T 5 HOH B 20 2020 2020 HOH HOH . 
T 5 HOH B 21 2021 2021 HOH HOH . 
T 5 HOH B 22 2022 2022 HOH HOH . 
T 5 HOH B 23 2023 2023 HOH HOH . 
T 5 HOH B 24 2024 2024 HOH HOH . 
T 5 HOH B 25 2025 2025 HOH HOH . 
T 5 HOH B 26 2026 2026 HOH HOH . 
T 5 HOH B 27 2027 2027 HOH HOH . 
T 5 HOH B 28 2028 2028 HOH HOH . 
T 5 HOH B 29 2029 2029 HOH HOH . 
T 5 HOH B 30 2030 2030 HOH HOH . 
T 5 HOH B 31 2031 2031 HOH HOH . 
T 5 HOH B 32 2032 2032 HOH HOH . 
T 5 HOH B 33 2033 2033 HOH HOH . 
T 5 HOH B 34 2034 2034 HOH HOH . 
T 5 HOH B 35 2035 2035 HOH HOH . 
T 5 HOH B 36 2036 2036 HOH HOH . 
T 5 HOH B 37 2037 2037 HOH HOH . 
T 5 HOH B 38 2038 2038 HOH HOH . 
T 5 HOH B 39 2039 2039 HOH HOH . 
T 5 HOH B 40 2040 2040 HOH HOH . 
T 5 HOH B 41 2041 2041 HOH HOH . 
T 5 HOH B 42 2042 2042 HOH HOH . 
T 5 HOH B 43 2043 2043 HOH HOH . 
T 5 HOH B 44 2044 2044 HOH HOH . 
T 5 HOH B 45 2045 2045 HOH HOH . 
T 5 HOH B 46 2046 2046 HOH HOH . 
T 5 HOH B 47 2047 2047 HOH HOH . 
T 5 HOH B 48 2048 2048 HOH HOH . 
T 5 HOH B 49 2049 2049 HOH HOH . 
T 5 HOH B 50 2050 2050 HOH HOH . 
T 5 HOH B 51 2051 2051 HOH HOH . 
T 5 HOH B 52 2052 2052 HOH HOH . 
T 5 HOH B 53 2053 2053 HOH HOH . 
T 5 HOH B 54 2054 2054 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               12.501 
_atom_site.Cartn_y               -19.949 
_atom_site.Cartn_z               7.047 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1361 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#