data_4ANG # _model_server_result.job_id 2lJ3OaFPwUoF9tjx1LugXA _model_server_result.datetime_utc '2024-11-24 13:49:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ang # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":132}' # _entry.id 4ANG # _exptl.entry_id 4ANG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.23 _cell.angle_beta 90.03 _cell.angle_gamma 119.45 _cell.entry_id 4ANG _cell.length_a 281.3 _cell.length_b 285.4 _cell.length_c 472.9 _cell.Z_PDB 360 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ANG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 300-MERIC 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 ? 600-meric 600 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-60) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 (1-5) A,B,C,D,E,F 4 (1,2,6,10,23,24) A,B,C,D,E,F 5 P A,B,C,D,E,F 6 (X0)(1-60) A,B,C,D,E,F 6 (X1)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.994328 -0.006811 -0.106137 0.013221 0.998122 0.059806 0.10553 -0.06087 0.992551 0 0 0 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X1 'transform to crystal frame' ? ? 0.978815 -0.013544 -0.204298 0.013429 0.999908 -0.001949 0.204306 -0.000836 0.978907 141.95 -30.15 234.9 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.315481 -0.801285 0.508345 0.864503 0.463587 0.19422 -0.391288 0.378193 0.838966 0 0 0 3 'point symmetry operation' ? ? -0.792094 -0.432003 0.431231 0.597511 -0.404348 0.692448 -0.124772 0.806149 0.578408 0 0 0 4 'point symmetry operation' ? ? -0.792094 0.597511 -0.124772 -0.432003 -0.404348 0.806149 0.431231 0.692448 0.578408 0 0 0 5 'point symmetry operation' ? ? 0.315481 0.864503 -0.391288 -0.801285 0.463587 0.378193 0.508345 0.19422 0.838966 0 0 0 6 'point symmetry operation' ? ? -0.977727 -0.012847 0.209488 -0.012847 -0.99259 -0.120834 0.209488 -0.120834 0.970316 0 0 0 7 'point symmetry operation' ? ? -0.401531 0.856709 -0.323764 -0.814869 -0.495556 -0.300687 -0.418044 0.14309 0.897086 0 0 0 8 'point symmetry operation' ? ? 0.740637 0.596454 -0.309353 -0.56783 0.309492 -0.762748 -0.359202 0.740579 0.567905 0 0 0 9 'point symmetry operation' ? ? 0.870339 -0.433948 0.232806 0.386871 0.310004 -0.868463 0.304697 0.845924 0.43769 0 0 0 10 'point symmetry operation' ? ? -0.191668 -0.810517 0.553467 0.729869 -0.494726 -0.471739 0.656167 0.313541 0.686394 0 0 0 11 'point symmetry operation' ? ? -0.99965 0.026393 0.001581 0.026393 0.992497 0.119388 0.001581 0.119388 -0.992846 0 0 0 12 'point symmetry operation' ? ? -0.293173 0.813838 -0.501714 0.819628 0.484112 0.306342 0.492199 -0.321408 -0.808973 0 0 0 13 'point symmetry operation' ? ? 0.80739 0.422455 -0.41189 0.557226 -0.316471 0.767688 0.193962 -0.84934 -0.490918 0 0 0 14 'point symmetry operation' ? ? 0.781097 -0.606879 0.14692 -0.398183 -0.302874 0.865862 -0.480975 -0.734824 -0.478223 0 0 0 15 'point symmetry operation' ? ? -0.335715 -0.851658 0.402459 -0.726256 0.506113 0.46519 -0.599873 -0.136117 -0.788432 0 0 0 16 'point symmetry operation' ? ? 0.977377 -0.013546 -0.21107 -0.013546 -0.999907 0.001446 -0.21107 0.001446 -0.97747 0 0 0 17 'point symmetry operation' ? ? 0.379223 -0.869262 0.317133 -0.869262 -0.452143 -0.199875 0.317133 -0.199875 -0.927079 0 0 0 18 'point symmetry operation' ? ? -0.755933 -0.586906 0.290012 -0.586906 0.411328 -0.697388 0.290012 -0.697388 -0.655395 0 0 0 19 'point symmetry operation' ? ? -0.859343 0.443316 -0.254953 0.443316 0.397218 -0.803548 -0.254953 -0.803548 -0.537875 0 0 0 20 'point symmetry operation' ? ? 0.211902 0.797672 -0.564639 0.797672 -0.474973 -0.371644 -0.564639 -0.371644 -0.736928 0 0 0 21 'point symmetry operation' ? ? 0.119473 0.044717 0.99183 0.990938 -0.06714 -0.116339 0.061389 0.996741 -0.052333 0 0 0 22 'point symmetry operation' ? ? -0.311741 0.300101 0.90153 0.300101 -0.869147 0.393094 0.90153 0.393094 0.180888 0 0 0 23 'point symmetry operation' ? ? -0.191668 0.729869 0.656167 -0.810517 -0.494726 0.313541 0.553467 -0.471739 0.686394 0 0 0 24 'point symmetry operation' ? ? 0.313756 0.740096 0.594824 -0.80608 0.538685 -0.245057 -0.501789 -0.402587 0.765592 0 0 0 25 'point symmetry operation' ? ? 0.506052 0.316648 0.802275 0.30728 0.802948 -0.510738 -0.80591 0.504983 0.309034 0 0 0 26 'point symmetry operation' ? ? 0.09039 -0.165767 0.982014 -0.992375 0.067969 0.102817 -0.08379 -0.98382 -0.158359 0 0 0 27 'point symmetry operation' ? ? -0.49904 0.222115 0.83763 -0.294547 0.86557 -0.405008 -0.814986 -0.448836 -0.36653 0 0 0 28 'point symmetry operation' ? ? -0.293173 0.819628 0.492199 0.813838 0.484112 -0.321408 -0.501714 0.306342 -0.808973 0 0 0 29 'point symmetry operation' ? ? 0.423489 0.80103 0.423093 0.80103 -0.549242 0.238084 0.423093 0.238084 -0.874247 0 0 0 30 'point symmetry operation' ? ? 0.660544 0.192022 0.725816 -0.315272 -0.806433 0.50027 0.681385 -0.55928 -0.472145 0 0 0 31 'point symmetry operation' ? ? -0.116683 0.165947 -0.979207 -0.992547 -0.054372 0.109058 -0.035144 0.984635 0.171055 0 0 0 32 'point symmetry operation' ? ? 0.489802 -0.199902 -0.848606 -0.402807 0.811352 -0.423621 0.773201 0.549315 0.31688 0 0 0 33 'point symmetry operation' ? ? 0.313756 -0.80608 -0.501789 0.740096 0.538685 -0.402587 0.594824 -0.245057 0.765592 0 0 0 34 'point symmetry operation' ? ? -0.401531 -0.814869 -0.418044 0.856709 -0.495556 0.14309 -0.323764 -0.300687 0.897086 0 0 0 35 'point symmetry operation' ? ? -0.667557 -0.214123 -0.713105 -0.214123 -0.862085 0.459304 -0.713105 0.459304 0.529642 0 0 0 36 'point symmetry operation' ? ? -0.093181 -0.044897 -0.994636 0.993985 0.053543 -0.095536 0.057545 -0.997556 0.039638 0 0 0 37 'point symmetry operation' ? ? 0.320979 -0.322314 -0.890554 0.397253 -0.807775 0.435534 -0.859746 -0.493573 -0.131238 0 0 0 38 'point symmetry operation' ? ? 0.171084 -0.743417 -0.646577 -0.743417 -0.528071 0.410454 -0.646577 0.410454 -0.643013 0 0 0 39 'point symmetry operation' ? ? -0.335715 -0.726256 -0.599873 -0.851658 0.506113 -0.136117 0.402459 0.46519 -0.788432 0 0 0 40 'point symmetry operation' ? ? -0.49904 -0.294547 -0.814986 0.222115 0.86557 -0.448836 0.83763 -0.405008 -0.36653 0 0 0 41 'point symmetry operation' ? ? 0.119473 0.990938 0.061389 0.044717 -0.06714 0.996741 0.99183 -0.116339 -0.052333 0 0 0 42 'point symmetry operation' ? ? 0.870339 0.386871 0.304697 -0.433948 0.310004 0.845924 0.232806 -0.868463 0.43769 0 0 0 43 'point symmetry operation' ? ? 0.489802 -0.402807 0.773201 -0.199902 0.811352 0.549315 -0.848606 -0.423621 0.31688 0 0 0 44 'point symmetry operation' ? ? -0.496249 -0.286788 0.819445 0.423411 0.744058 0.516819 -0.757932 0.603432 -0.247809 0 0 0 45 'point symmetry operation' ? ? -0.725125 0.574594 0.379521 0.574594 0.20112 0.793343 0.379521 0.793343 -0.475995 0 0 0 46 'point symmetry operation' ? ? -0.116683 -0.992547 -0.035144 0.165947 -0.054372 0.984635 -0.979207 0.109058 0.171055 0 0 0 47 'point symmetry operation' ? ? -0.88112 -0.379927 -0.281572 -0.379927 0.214205 0.899873 -0.281572 0.899873 -0.333085 0 0 0 48 'point symmetry operation' ? ? -0.496249 0.423411 -0.757932 -0.286788 0.744058 0.603432 0.819445 0.516819 -0.247809 0 0 0 49 'point symmetry operation' ? ? 0.506052 0.30728 -0.80591 0.316648 0.802948 0.504983 0.802275 -0.510738 0.309034 0 0 0 50 'point symmetry operation' ? ? 0.740637 -0.56783 -0.359202 0.596454 0.309492 0.740579 -0.309353 -0.762748 0.567906 0 0 0 51 'point symmetry operation' ? ? -0.093181 0.993985 0.057545 -0.044897 0.053543 -0.997556 -0.994636 -0.095536 0.039638 0 0 0 52 'point symmetry operation' ? ? 0.80739 0.557226 0.193962 0.422455 -0.316471 -0.84934 -0.41189 0.767688 -0.490918 0 0 0 53 'point symmetry operation' ? ? 0.660544 -0.315272 0.681385 0.192022 -0.806433 -0.55928 0.725816 0.50027 -0.472145 0 0 0 54 'point symmetry operation' ? ? -0.330782 -0.417745 0.846211 -0.417745 -0.739232 -0.528229 0.846211 -0.528229 0.070013 0 0 0 55 'point symmetry operation' ? ? -0.796609 0.39142 0.460656 -0.564169 -0.207737 -0.799098 -0.217087 -0.896457 0.386313 0 0 0 56 'point symmetry operation' ? ? 0.09039 -0.992375 -0.08379 -0.165767 0.067969 -0.98382 0.982014 0.102817 -0.158359 0 0 0 57 'point symmetry operation' ? ? -0.796609 -0.564169 -0.217087 0.39142 -0.207737 -0.896457 0.460656 -0.799098 0.386313 0 0 0 58 'point symmetry operation' ? ? -0.654098 0.294669 -0.696654 0.294669 -0.748977 -0.593468 -0.696654 -0.593468 0.403074 0 0 0 59 'point symmetry operation' ? ? 0.320979 0.397253 -0.859746 -0.322314 -0.807775 -0.493573 -0.890554 0.435534 -0.131238 0 0 0 60 'point symmetry operation' ? ? 0.781097 -0.398183 -0.480975 -0.606879 -0.302874 -0.734824 0.14692 0.865862 -0.478223 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O TYR 131 B TYR 131 1_555 F CA CA . B CA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 F CA CA . B CA 132 1_555 C OE1 GLN 2 C GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? hydrog WATSON-CRICK hydrog1 D N1 A 5 R A 5 1_555 D N3 U 16 R U 16 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N1 A 5 R A 5 1_555 D N3 U 16 R U 16 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N6 A 5 R A 5 1_555 D O4 U 16 R U 16 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N6 A 5 R A 5 1_555 D O4 U 16 R U 16 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N1 G 7 R G 7 1_555 D N3 C 15 R C 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N2 G 7 R G 7 1_555 D O2 C 15 R C 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D O6 G 7 R G 7 1_555 D N4 C 15 R C 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog8 D N2 G 8 R G 8 1_555 D N3 C 14 R C 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog9 D N2 G 8 R G 8 1_555 D N3 C 14 R C 14 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 E N3 U 4 S U 4 1_555 E N1 A 17 S A 17 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 E O4 U 4 S U 4 1_555 E N6 A 17 S A 17 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 E N1 A 5 S A 5 1_555 E N3 U 16 S U 16 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 E N6 A 5 S A 5 1_555 E O4 U 16 S U 16 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog14 E O6 G 7 S G 7 1_555 E N4 C 15 S C 15 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog15 E N2 G 8 S G 8 1_555 E O2 C 14 S C 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ANG _atom_sites.fract_transf_matrix[1][1] 0.003555 _atom_sites.fract_transf_matrix[1][2] 0.002007 _atom_sites.fract_transf_matrix[1][3] 0.000133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004024 _atom_sites.fract_transf_matrix[2][3] 0.000262 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id CA _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 132 _pdbx_nonpoly_scheme.auth_seq_num 132 _pdbx_nonpoly_scheme.pdb_mon_id CA _pdbx_nonpoly_scheme.auth_mon_id CA _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.374 _atom_site.Cartn_y 17.278 _atom_site.Cartn_z 125.296 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.05 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 132 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #