data_4AOJ
#
_model_server_result.job_id            fraYXq2D2dj1pSH9F3Jg-Q 
_model_server_result.datetime_utc      '2024-11-27 19:56:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4aoj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":900}' 
#
_entry.id    4AOJ 
#
_exptl.entry_id    4AOJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              391.83 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-chloranyl-N2-[(1S)-1-(5-fluoranylpyridin-2-yl)ethyl]-N4-(3-propan-2-yloxy-1H-pyrazol-5-yl)pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AOJ 
_cell.length_a            130.727 
_cell.length_b            158.419 
_cell.length_c            152.577 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AOJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 130.727 158.419 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 130.727 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 158.419 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 34 A CYS 501 1_555 H ZN ZN . B ZN 1792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc2 A NE2 HIS 37 A HIS 504 1_555 E ZN ZN . A ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc3 A OE1 GLU 48 A GLU 515 1_555 F ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc4 A NZ LYS 56 A LYS 523 1_555 F ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc5 A SG CYS 112 A CYS 579 1_555 E ZN ZN . A ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc6 A OE1 GLU 114 A GLU 581 1_555 E ZN ZN . A ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc7 E ZN ZN . A ZN 1790 1_555 C SG CYS 34 C CYS 501 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc8 B SG CYS 34 B CYS 501 1_555 K ZN ZN . C ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc9 B NE2 HIS 37 B HIS 504 1_555 H ZN ZN . B ZN 1792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
metalc ? metalc10 B OE2 GLU 48 B GLU 515 1_555 I ZN ZN . B ZN 1793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc11 B NZ LYS 56 B LYS 523 1_555 I ZN ZN . B ZN 1793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc12 B SG CYS 112 B CYS 579 1_555 H ZN ZN . B ZN 1792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc13 C NE2 HIS 37 C HIS 504 1_555 K ZN ZN . C ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
metalc ? metalc14 C OE2 GLU 48 C GLU 515 1_555 L ZN ZN . C ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc15 C NZ LYS 56 C LYS 523 1_555 L ZN ZN . C ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc16 C SG CYS 112 C CYS 579 1_555 K ZN ZN . C ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc17 C OE2 GLU 114 C GLU 581 1_555 K ZN ZN . C ZN 1790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C17 H19 Cl F N7 O' 
_chem_comp.formula_weight    391.83 
_chem_comp.id                V4Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-chloranyl-N2-[(1S)-1-(5-fluoranylpyridin-2-yl)ethyl]-N4-(3-propan-2-yloxy-1H-pyrazol-5-yl)pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 V4Z sing 358 n n 
C2 C3 V4Z sing 359 n n 
C2 O1 V4Z sing 360 n n 
O1 C4 V4Z sing 361 n n 
C4 C5 V4Z sing 362 n y 
C4 N7 V4Z doub 363 n y 
C5 C6 V4Z doub 364 n y 
C6 N1 V4Z sing 365 n n 
C6 N6 V4Z sing 366 n y 
N1 C7 V4Z sing 367 n n 
C7 N2 V4Z sing 368 n y 
C7 C17 V4Z doub 369 n y 
N2 C8 V4Z doub 370 n y 
C8 N3 V4Z sing 371 n n 
C8 N5 V4Z sing 372 n y 
N3 C9 V4Z sing 373 n n 
C9 C10 V4Z sing 374 n n 
C9 C11 V4Z sing 375 n n 
C11 C12 V4Z sing 376 n y 
C11 N4 V4Z doub 377 n y 
C12 C13 V4Z doub 378 n y 
C13 C14 V4Z sing 379 n y 
C14 F1 V4Z sing 380 n n 
C14 C15 V4Z doub 381 n y 
C15 N4 V4Z sing 382 n y 
N5 C16 V4Z doub 383 n y 
C16 C17 V4Z sing 384 n y 
C17 CL1 V4Z sing 385 n n 
N6 N7 V4Z sing 386 n y 
C1 H11C V4Z sing 387 n n 
C1 H12C V4Z sing 388 n n 
C1 H13C V4Z sing 389 n n 
C2 H2 V4Z sing 390 n n 
C3 H31C V4Z sing 391 n n 
C3 H32C V4Z sing 392 n n 
C3 H33C V4Z sing 393 n n 
C5 H5 V4Z sing 394 n n 
N1 H1 V4Z sing 395 n n 
N6 H6 V4Z sing 396 n n 
N3 H3 V4Z sing 397 n n 
C9 H9 V4Z sing 398 n n 
C10 H101 V4Z sing 399 n n 
C10 H102 V4Z sing 400 n n 
C10 H103 V4Z sing 401 n n 
C12 H12 V4Z sing 402 n n 
C13 H13 V4Z sing 403 n n 
C15 H15 V4Z sing 404 n n 
C16 H16 V4Z sing 405 n n 
#
_atom_sites.entry_id                     4AOJ 
_atom_sites.fract_transf_matrix[1][1]    0.00765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 V4Z A 1 900 900 V4Z V4Z . 
E 3 ZN A 1 1790 1790 ZN ZN . 
F 3 ZN A 1 1791 1791 ZN ZN . 
G 2 V4Z B 1 900 900 V4Z V4Z . 
H 3 ZN B 1 1792 1792 ZN ZN . 
I 3 ZN B 1 1793 1793 ZN ZN . 
J 2 V4Z C 1 900 900 V4Z V4Z . 
K 3 ZN C 1 1790 1790 ZN ZN . 
L 3 ZN C 1 1791 1791 ZN ZN . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
M 4 HOH A 6 2006 2006 HOH HOH . 
M 4 HOH A 7 2007 2007 HOH HOH . 
M 4 HOH A 8 2008 2008 HOH HOH . 
M 4 HOH A 9 2009 2009 HOH HOH . 
M 4 HOH A 10 2010 2010 HOH HOH . 
M 4 HOH A 11 2011 2011 HOH HOH . 
M 4 HOH A 12 2012 2012 HOH HOH . 
M 4 HOH A 13 2013 2013 HOH HOH . 
M 4 HOH A 14 2014 2014 HOH HOH . 
M 4 HOH A 15 2015 2015 HOH HOH . 
M 4 HOH A 16 2016 2016 HOH HOH . 
M 4 HOH A 17 2017 2017 HOH HOH . 
M 4 HOH A 18 2018 2018 HOH HOH . 
M 4 HOH A 19 2019 2019 HOH HOH . 
M 4 HOH A 20 2020 2020 HOH HOH . 
M 4 HOH A 21 2021 2021 HOH HOH . 
M 4 HOH A 22 2022 2022 HOH HOH . 
M 4 HOH A 23 2023 2023 HOH HOH . 
M 4 HOH A 24 2024 2024 HOH HOH . 
M 4 HOH A 25 2025 2025 HOH HOH . 
M 4 HOH A 26 2026 2026 HOH HOH . 
M 4 HOH A 27 2027 2027 HOH HOH . 
M 4 HOH A 28 2028 2028 HOH HOH . 
M 4 HOH A 29 2029 2029 HOH HOH . 
M 4 HOH A 30 2030 2030 HOH HOH . 
M 4 HOH A 31 2031 2031 HOH HOH . 
M 4 HOH A 32 2032 2032 HOH HOH . 
M 4 HOH A 33 2033 2033 HOH HOH . 
M 4 HOH A 34 2034 2034 HOH HOH . 
M 4 HOH A 35 2035 2035 HOH HOH . 
M 4 HOH A 36 2036 2036 HOH HOH . 
M 4 HOH A 37 2037 2037 HOH HOH . 
M 4 HOH A 38 2038 2038 HOH HOH . 
M 4 HOH A 39 2039 2039 HOH HOH . 
M 4 HOH A 40 2040 2040 HOH HOH . 
M 4 HOH A 41 2041 2041 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
N 4 HOH B 8 2008 2008 HOH HOH . 
N 4 HOH B 9 2009 2009 HOH HOH . 
N 4 HOH B 10 2010 2010 HOH HOH . 
N 4 HOH B 11 2011 2011 HOH HOH . 
N 4 HOH B 12 2012 2012 HOH HOH . 
N 4 HOH B 13 2013 2013 HOH HOH . 
N 4 HOH B 14 2014 2014 HOH HOH . 
N 4 HOH B 15 2015 2015 HOH HOH . 
N 4 HOH B 16 2016 2016 HOH HOH . 
N 4 HOH B 17 2017 2017 HOH HOH . 
N 4 HOH B 18 2018 2018 HOH HOH . 
N 4 HOH B 19 2019 2019 HOH HOH . 
N 4 HOH B 20 2020 2020 HOH HOH . 
N 4 HOH B 21 2021 2021 HOH HOH . 
N 4 HOH B 22 2022 2022 HOH HOH . 
N 4 HOH B 23 2023 2023 HOH HOH . 
N 4 HOH B 24 2024 2024 HOH HOH . 
N 4 HOH B 25 2025 2025 HOH HOH . 
N 4 HOH B 26 2026 2026 HOH HOH . 
N 4 HOH B 27 2027 2027 HOH HOH . 
N 4 HOH B 28 2028 2028 HOH HOH . 
N 4 HOH B 29 2029 2029 HOH HOH . 
N 4 HOH B 30 2030 2030 HOH HOH . 
N 4 HOH B 31 2031 2031 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
O 4 HOH C 2 2002 2002 HOH HOH . 
O 4 HOH C 3 2003 2003 HOH HOH . 
O 4 HOH C 4 2004 2004 HOH HOH . 
O 4 HOH C 5 2005 2005 HOH HOH . 
O 4 HOH C 6 2006 2006 HOH HOH . 
O 4 HOH C 7 2007 2007 HOH HOH . 
O 4 HOH C 8 2008 2008 HOH HOH . 
O 4 HOH C 9 2009 2009 HOH HOH . 
O 4 HOH C 10 2010 2010 HOH HOH . 
O 4 HOH C 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 V4Z . . . D 2 90.009 56.374 24.062 1 23.88 ? C1 V4Z 900 A 1 
HETATM 2 C C2 V4Z . . . D 2 91.214 57.2 24.48 1 27.97 ? C2 V4Z 900 A 1 
HETATM 3 C C3 V4Z . . . D 2 91.11 58.67 24.13 1 25.3 ? C3 V4Z 900 A 1 
HETATM 4 O O1 V4Z . . . D 2 91.357 57.054 25.89 1 30.4 ? O1 V4Z 900 A 1 
HETATM 5 C C4 V4Z . . . D 2 92.623 57.116 26.379 1 29.19 ? C4 V4Z 900 A 1 
HETATM 6 C C5 V4Z . . . D 2 93.905 57.078 25.872 1 26.72 ? C5 V4Z 900 A 1 
HETATM 7 C C6 V4Z . . . D 2 94.75 57.221 27.015 1 28.85 ? C6 V4Z 900 A 1 
HETATM 8 N N1 V4Z . . . D 2 96.118 57.255 27.006 1 26.65 ? N1 V4Z 900 A 1 
HETATM 9 C C7 V4Z . . . D 2 97.006 57.157 25.95 1 27.57 ? C7 V4Z 900 A 1 
HETATM 10 N N2 V4Z . . . D 2 96.565 57.054 24.687 1 29.96 ? N2 V4Z 900 A 1 
HETATM 11 C C8 V4Z . . . D 2 97.512 56.944 23.741 1 31.14 ? C8 V4Z 900 A 1 
HETATM 12 N N3 V4Z . . . D 2 97.207 56.821 22.396 1 32.08 ? N3 V4Z 900 A 1 
HETATM 13 C C9 V4Z . . . D 2 95.792 56.906 22.108 1 32.22 ? C9 V4Z 900 A 1 
HETATM 14 C C10 V4Z . . . D 2 95.673 57.407 20.674 1 30.51 ? C10 V4Z 900 A 1 
HETATM 15 C C11 V4Z . . . D 2 95.099 55.587 22.16 1 29.15 ? C11 V4Z 900 A 1 
HETATM 16 C C12 V4Z . . . D 2 93.745 55.595 22.354 1 25.37 ? C12 V4Z 900 A 1 
HETATM 17 C C13 V4Z . . . D 2 93.072 54.41 22.399 1 22.19 ? C13 V4Z 900 A 1 
HETATM 18 C C14 V4Z . . . D 2 93.759 53.241 22.254 1 26.28 ? C14 V4Z 900 A 1 
HETATM 19 F F1 V4Z . . . D 2 93.08 52.049 22.278 1 32.43 ? F1 V4Z 900 A 1 
HETATM 20 C C15 V4Z . . . D 2 95.111 53.31 22.064 1 27.51 ? C15 V4Z 900 A 1 
HETATM 21 N N4 V4Z . . . D 2 95.792 54.462 22.018 1 30.62 ? N4 V4Z 900 A 1 
HETATM 22 N N5 V4Z . . . D 2 98.831 56.947 23.959 1 31.43 ? N5 V4Z 900 A 1 
HETATM 23 C C16 V4Z . . . D 2 99.235 57.052 25.219 1 29.14 ? C16 V4Z 900 A 1 
HETATM 24 C C17 V4Z . . . D 2 98.355 57.155 26.261 1 30.03 ? C17 V4Z 900 A 1 
HETATM 25 CL CL1 V4Z . . . D 2 99.046 57.259 27.866 1 33.74 ? CL1 V4Z 900 A 1 
HETATM 26 N N6 V4Z . . . D 2 94.044 57.337 28.15 1 27.86 ? N6 V4Z 900 A 1 
HETATM 27 N N7 V4Z . . . D 2 92.784 57.254 27.729 1 30 ? N7 V4Z 900 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#