data_4AOT # _model_server_result.job_id tFn7e5zoII8txyYMC1zs-Q _model_server_result.datetime_utc '2025-03-04 15:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1319}' # _entry.id 4AOT # _exptl.entry_id 4AOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 628.744 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-{methyl[2-({4-[(methylsulfonyl)methyl]phenyl}amino)pyrimidin-4-yl]amino}phenyl)-3-{3-[(4-methylpiperazin-1-yl)carbonyl]phenyl}urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AOT _cell.length_a 55.69 _cell.length_b 87.51 _cell.length_c 148.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N # _chem_comp.formula 'C32 H36 N8 O4 S' _chem_comp.formula_weight 628.744 _chem_comp.id GW8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-{methyl[2-({4-[(methylsulfonyl)methyl]phenyl}amino)pyrimidin-4-yl]amino}phenyl)-3-{3-[(4-methylpiperazin-1-yl)carbonyl]phenyl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GW830263A # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 GW8 doub 129 n y N1 C2 GW8 sing 130 n y C2 NBE GW8 sing 131 n n C2 N3 GW8 doub 132 n y C4 N3 GW8 sing 133 n y C5 C4 GW8 doub 134 n y C4 NBQ GW8 sing 135 n n C6 C5 GW8 sing 136 n y C5 H5 GW8 sing 137 n n C6 H6 GW8 sing 138 n n NBP CAA GW8 sing 139 n n CAA HAA GW8 sing 140 n n CAA HAAA GW8 sing 141 n n CAA HAAB GW8 sing 142 n n NBQ CAB GW8 sing 143 n n CAB HAB GW8 sing 144 n n CAB HABA GW8 sing 145 n n CAB HABB GW8 sing 146 n n CAC SBS GW8 sing 147 n n CAC HAC GW8 sing 148 n n CAC HACA GW8 sing 149 n n CAC HACB GW8 sing 150 n n CBF OAD GW8 doub 151 n n CBG OAE GW8 doub 152 n n SBS OAF GW8 doub 153 n n SBS OAG GW8 doub 154 n n CAJ CAH GW8 doub 155 n y CAH CAK GW8 sing 156 n y CAH HAH GW8 sing 157 n n CAJ CBK GW8 sing 158 n y CAJ HAJ GW8 sing 159 n n CAK CBL GW8 doub 160 n y CAK HAK GW8 sing 161 n n CAO CAM GW8 doub 162 n y CAM CBH GW8 sing 163 n y CAM HAM GW8 sing 164 n n CAP CAN GW8 sing 165 n y CBH CAN GW8 doub 166 n y CAN HAN GW8 sing 167 n n CAO CBJ GW8 sing 168 n y CAO HAO GW8 sing 169 n n CBJ CAP GW8 doub 170 n y CAP HAP GW8 sing 171 n n CAS CAQ GW8 doub 172 n y CAQ CBI GW8 sing 173 n y CAQ HAQ GW8 sing 174 n n CAT CAR GW8 sing 175 n y CBI CAR GW8 doub 176 n y CAR HAR GW8 sing 177 n n CAS CBM GW8 sing 178 n y CAS HAS GW8 sing 179 n n CBM CAT GW8 doub 180 n y CAT HAT GW8 sing 181 n n CBK CAU GW8 doub 182 n y CAU CBL GW8 sing 183 n y CAU HAU GW8 sing 184 n n CAX CAV GW8 sing 185 n n CAV NBP GW8 sing 186 n n CAV HAV GW8 sing 187 n n CAV HAVA GW8 sing 188 n n CAY CAW GW8 sing 189 n n CAW NBP GW8 sing 190 n n CAW HAW GW8 sing 191 n n CAW HAWA GW8 sing 192 n n NBR CAX GW8 sing 193 n n CAX HAX GW8 sing 194 n n CAX HAXA GW8 sing 195 n n NBR CAY GW8 sing 196 n n CAY HAY GW8 sing 197 n n CAY HAYA GW8 sing 198 n n CBH CAZ GW8 sing 199 n n CAZ SBS GW8 sing 200 n n CAZ HAZ GW8 sing 201 n n CAZ HAZA GW8 sing 202 n n CBI NBC GW8 sing 203 n n NBC CBF GW8 sing 204 n n NBC HNBC GW8 sing 205 n n CBF NBD GW8 sing 206 n n NBD CBK GW8 sing 207 n n NBD HNBD GW8 sing 208 n n NBE CBJ GW8 sing 209 n n NBE HNBE GW8 sing 210 n n CBL CBG GW8 sing 211 n n CBG NBR GW8 sing 212 n n NBQ CBM GW8 sing 213 n n # _atom_sites.entry_id 4AOT _atom_sites.fract_transf_matrix[1][1] 0.017957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 1315 1315 CL CL . D 2 CL A 1 1316 1316 CL CL . E 2 CL A 1 1317 1317 CL CL . F 2 CL A 1 1318 1318 CL CL . G 3 GW8 A 1 1319 1319 GW8 GW8 . H 2 CL B 1 1315 1315 CL CL . I 2 CL B 1 1316 1316 CL CL . J 3 GW8 B 1 1319 1319 GW8 GW8 . K 4 HOH A 1 2001 2001 HOH HOH . K 4 HOH A 2 2002 2002 HOH HOH . K 4 HOH A 3 2003 2003 HOH HOH . K 4 HOH A 4 2004 2004 HOH HOH . K 4 HOH A 5 2005 2005 HOH HOH . K 4 HOH A 6 2006 2006 HOH HOH . K 4 HOH A 7 2007 2007 HOH HOH . K 4 HOH A 8 2008 2008 HOH HOH . K 4 HOH A 9 2009 2009 HOH HOH . K 4 HOH A 10 2010 2010 HOH HOH . K 4 HOH A 11 2011 2011 HOH HOH . K 4 HOH A 12 2012 2012 HOH HOH . K 4 HOH A 13 2013 2013 HOH HOH . K 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH A 15 2015 2015 HOH HOH . K 4 HOH A 16 2016 2016 HOH HOH . K 4 HOH A 17 2017 2017 HOH HOH . K 4 HOH A 18 2018 2018 HOH HOH . K 4 HOH A 19 2019 2019 HOH HOH . K 4 HOH A 20 2020 2020 HOH HOH . K 4 HOH A 21 2021 2021 HOH HOH . K 4 HOH A 22 2022 2022 HOH HOH . K 4 HOH A 23 2023 2023 HOH HOH . K 4 HOH A 24 2024 2024 HOH HOH . K 4 HOH A 25 2025 2025 HOH HOH . K 4 HOH A 26 2026 2026 HOH HOH . K 4 HOH A 27 2027 2027 HOH HOH . K 4 HOH A 28 2028 2028 HOH HOH . K 4 HOH A 29 2029 2029 HOH HOH . K 4 HOH A 30 2030 2030 HOH HOH . K 4 HOH A 31 2031 2031 HOH HOH . K 4 HOH A 32 2032 2032 HOH HOH . K 4 HOH A 33 2033 2033 HOH HOH . K 4 HOH A 34 2034 2034 HOH HOH . K 4 HOH A 35 2035 2035 HOH HOH . K 4 HOH A 36 2036 2036 HOH HOH . K 4 HOH A 37 2037 2037 HOH HOH . K 4 HOH A 38 2038 2038 HOH HOH . K 4 HOH A 39 2039 2039 HOH HOH . K 4 HOH A 40 2040 2040 HOH HOH . K 4 HOH A 41 2041 2041 HOH HOH . K 4 HOH A 42 2042 2042 HOH HOH . K 4 HOH A 43 2043 2043 HOH HOH . K 4 HOH A 44 2044 2044 HOH HOH . K 4 HOH A 45 2045 2045 HOH HOH . K 4 HOH A 46 2046 2046 HOH HOH . K 4 HOH A 47 2047 2047 HOH HOH . K 4 HOH A 48 2048 2048 HOH HOH . K 4 HOH A 49 2049 2049 HOH HOH . K 4 HOH A 50 2050 2050 HOH HOH . K 4 HOH A 51 2051 2051 HOH HOH . K 4 HOH A 52 2052 2052 HOH HOH . K 4 HOH A 53 2053 2053 HOH HOH . K 4 HOH A 54 2054 2054 HOH HOH . K 4 HOH A 55 2055 2055 HOH HOH . K 4 HOH A 56 2056 2056 HOH HOH . K 4 HOH A 57 2057 2057 HOH HOH . K 4 HOH A 58 2058 2058 HOH HOH . K 4 HOH A 59 2059 2059 HOH HOH . K 4 HOH A 60 2060 2060 HOH HOH . K 4 HOH A 61 2061 2061 HOH HOH . K 4 HOH A 62 2062 2062 HOH HOH . K 4 HOH A 63 2063 2063 HOH HOH . K 4 HOH A 64 2064 2064 HOH HOH . K 4 HOH A 65 2065 2065 HOH HOH . K 4 HOH A 66 2066 2066 HOH HOH . K 4 HOH A 67 2067 2067 HOH HOH . K 4 HOH A 68 2068 2068 HOH HOH . K 4 HOH A 69 2069 2069 HOH HOH . K 4 HOH A 70 2070 2070 HOH HOH . K 4 HOH A 71 2071 2071 HOH HOH . L 4 HOH B 1 2001 2001 HOH HOH . L 4 HOH B 2 2002 2002 HOH HOH . L 4 HOH B 3 2003 2003 HOH HOH . L 4 HOH B 4 2004 2004 HOH HOH . L 4 HOH B 5 2005 2005 HOH HOH . L 4 HOH B 6 2006 2006 HOH HOH . L 4 HOH B 7 2007 2007 HOH HOH . L 4 HOH B 8 2008 2008 HOH HOH . L 4 HOH B 9 2009 2009 HOH HOH . L 4 HOH B 10 2010 2010 HOH HOH . L 4 HOH B 11 2011 2011 HOH HOH . L 4 HOH B 12 2012 2012 HOH HOH . L 4 HOH B 13 2013 2013 HOH HOH . L 4 HOH B 14 2014 2014 HOH HOH . L 4 HOH B 15 2015 2015 HOH HOH . L 4 HOH B 16 2016 2016 HOH HOH . L 4 HOH B 17 2017 2017 HOH HOH . L 4 HOH B 18 2018 2018 HOH HOH . L 4 HOH B 19 2019 2019 HOH HOH . L 4 HOH B 20 2020 2020 HOH HOH . L 4 HOH B 21 2021 2021 HOH HOH . L 4 HOH B 22 2022 2022 HOH HOH . L 4 HOH B 23 2023 2023 HOH HOH . L 4 HOH B 24 2024 2024 HOH HOH . L 4 HOH B 25 2025 2025 HOH HOH . L 4 HOH B 26 2026 2026 HOH HOH . L 4 HOH B 27 2027 2027 HOH HOH . L 4 HOH B 28 2028 2028 HOH HOH . L 4 HOH B 29 2029 2029 HOH HOH . L 4 HOH B 30 2030 2030 HOH HOH . L 4 HOH B 31 2031 2031 HOH HOH . L 4 HOH B 32 2032 2032 HOH HOH . L 4 HOH B 33 2033 2033 HOH HOH . L 4 HOH B 34 2034 2034 HOH HOH . L 4 HOH B 35 2035 2035 HOH HOH . L 4 HOH B 36 2036 2036 HOH HOH . L 4 HOH B 37 2037 2037 HOH HOH . L 4 HOH B 38 2038 2038 HOH HOH . L 4 HOH B 39 2039 2039 HOH HOH . L 4 HOH B 40 2040 2040 HOH HOH . L 4 HOH B 41 2041 2041 HOH HOH . L 4 HOH B 42 2042 2042 HOH HOH . L 4 HOH B 43 2043 2043 HOH HOH . L 4 HOH B 44 2044 2044 HOH HOH . L 4 HOH B 45 2045 2045 HOH HOH . L 4 HOH B 46 2046 2046 HOH HOH . L 4 HOH B 47 2047 2047 HOH HOH . L 4 HOH B 48 2048 2048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GW8 . . . J 3 17.784 8.314 18.502 1 49.46 ? N1 GW8 1319 B 1 HETATM 2 C C2 GW8 . . . J 3 17.707 9.047 19.625 1 50.43 ? C2 GW8 1319 B 1 HETATM 3 N N3 GW8 . . . J 3 18.538 8.785 20.645 1 48.76 ? N3 GW8 1319 B 1 HETATM 4 C C4 GW8 . . . J 3 19.462 7.788 20.631 1 47.39 ? C4 GW8 1319 B 1 HETATM 5 C C5 GW8 . . . J 3 19.561 7.003 19.481 1 46.56 ? C5 GW8 1319 B 1 HETATM 6 C C6 GW8 . . . J 3 18.717 7.286 18.399 1 47.98 ? C6 GW8 1319 B 1 HETATM 7 C CAA GW8 . . . J 3 26.217 -0.971 32.326 1 85.31 ? CAA GW8 1319 B 1 HETATM 8 C CAB GW8 . . . J 3 20.207 8.585 22.802 1 47.85 ? CAB GW8 1319 B 1 HETATM 9 C CAC GW8 . . . J 3 13.356 15.537 23.34 1 96.76 ? CAC GW8 1319 B 1 HETATM 10 O OAD GW8 . . . J 3 24.684 4.002 23.872 1 37.12 ? OAD GW8 1319 B 1 HETATM 11 O OAE GW8 . . . J 3 27.036 3.279 27.846 1 57.17 ? OAE GW8 1319 B 1 HETATM 12 O OAF GW8 . . . J 3 13.612 12.977 24.254 1 96.2 ? OAF GW8 1319 B 1 HETATM 13 O OAG GW8 . . . J 3 14.671 14.85 25.575 1 95.53 ? OAG GW8 1319 B 1 HETATM 14 C CAH GW8 . . . J 3 27.732 -0.002 24.779 1 53.48 ? CAH GW8 1319 B 1 HETATM 15 C CAJ GW8 . . . J 3 26.728 0.431 23.899 1 49.54 ? CAJ GW8 1319 B 1 HETATM 16 C CAK GW8 . . . J 3 27.77 0.538 26.077 1 56.84 ? CAK GW8 1319 B 1 HETATM 17 C CAM GW8 . . . J 3 15.682 13.137 21.122 1 69.73 ? CAM GW8 1319 B 1 HETATM 18 C CAN GW8 . . . J 3 16.958 11.955 22.783 1 71.21 ? CAN GW8 1319 B 1 HETATM 19 C CAO GW8 . . . J 3 15.907 12.082 20.229 1 66.58 ? CAO GW8 1319 B 1 HETATM 20 C CAP GW8 . . . J 3 17.174 10.886 21.899 1 67.69 ? CAP GW8 1319 B 1 HETATM 21 C CAQ GW8 . . . J 3 23.198 5.444 21.95 1 38.07 ? CAQ GW8 1319 B 1 HETATM 22 C CAR GW8 . . . J 3 21.199 4.115 22.228 1 37.09 ? CAR GW8 1319 B 1 HETATM 23 C CAS GW8 . . . J 3 22.393 6.572 21.793 1 37.62 ? CAS GW8 1319 B 1 HETATM 24 C CAT GW8 . . . J 3 20.401 5.233 22.1 1 37.3 ? CAT GW8 1319 B 1 HETATM 25 C CAU GW8 . . . J 3 25.853 1.935 25.593 1 47.89 ? CAU GW8 1319 B 1 HETATM 26 C CAV GW8 . . . J 3 27.345 -0.813 30.227 1 76.62 ? CAV GW8 1319 B 1 HETATM 27 C CAW GW8 . . . J 3 26.288 1.227 31.265 1 78.87 ? CAW GW8 1319 B 1 HETATM 28 C CAX GW8 . . . J 3 26.671 -0.187 28.996 1 72.75 ? CAX GW8 1319 B 1 HETATM 29 C CAY GW8 . . . J 3 27.02 2.005 30.26 1 74.72 ? CAY GW8 1319 B 1 HETATM 30 C CAZ GW8 . . . J 3 16.004 14.167 23.317 1 85.76 ? CAZ GW8 1319 B 1 HETATM 31 N NBC GW8 . . . J 3 23.285 3.058 22.325 1 36.86 ? NBC GW8 1319 B 1 HETATM 32 N NBD GW8 . . . J 3 24.835 1.749 23.396 1 42.85 ? NBD GW8 1319 B 1 HETATM 33 N NBE GW8 . . . J 3 16.774 10.01 19.642 1 55.72 ? NBE GW8 1319 B 1 HETATM 34 C CBF GW8 . . . J 3 24.286 2.996 23.253 1 41.69 ? CBF GW8 1319 B 1 HETATM 35 C CBG GW8 . . . J 3 26.905 2.054 27.792 1 59.61 ? CBG GW8 1319 B 1 HETATM 36 C CBH GW8 . . . J 3 16.195 13.08 22.417 1 73.8 ? CBH GW8 1319 B 1 HETATM 37 C CBI GW8 . . . J 3 22.601 4.196 22.148 1 38.51 ? CBI GW8 1319 B 1 HETATM 38 C CBJ GW8 . . . J 3 16.654 10.952 20.592 1 62.52 ? CBJ GW8 1319 B 1 HETATM 39 C CBK GW8 . . . J 3 25.8 1.422 24.281 1 46.33 ? CBK GW8 1319 B 1 HETATM 40 C CBL GW8 . . . J 3 26.821 1.493 26.503 1 53.21 ? CBL GW8 1319 B 1 HETATM 41 C CBM GW8 . . . J 3 21 6.48 21.866 1 41.6 ? CBM GW8 1319 B 1 HETATM 42 N NBP GW8 . . . J 3 26.998 -0.072 31.449 1 82.55 ? NBP GW8 1319 B 1 HETATM 43 N NBQ GW8 . . . J 3 20.248 7.59 21.712 1 43.34 ? NBQ GW8 1319 B 1 HETATM 44 N NBR GW8 . . . J 3 26.881 1.303 28.938 1 71.38 ? NBR GW8 1319 B 1 HETATM 45 S SBS GW8 . . . J 3 14.372 14.322 24.173 1 97.4 ? SBS GW8 1319 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #