data_4AOU
#
_model_server_result.job_id            bismdcaFRPvsEhMUkxSm-g 
_model_server_result.datetime_utc      '2024-10-10 03:24:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4aou 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1520}' 
#
_entry.id    4AOU 
#
_exptl.entry_id    4AOU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AOU 
_cell.length_a            129.2 
_cell.length_b            129.2 
_cell.length_c            60.59 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AOU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -40.393333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 250 A ASP 250 5_554 C MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc2 A OD1 ASP 273 A ASP 273 1_555 C MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc3 B O1 ICT . A ICT 1403 1_555 C MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc4 B O7 ICT . A ICT 1403 1_555 C MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc5 C MG MG . A MG 1404 1_555 E O HOH . A HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 257 n n 
PA O2A NAP sing 258 n n 
PA O5B NAP sing 259 n n 
PA O3 NAP sing 260 n n 
O2A HOA2 NAP sing 261 n n 
O5B C5B NAP sing 262 n n 
C5B C4B NAP sing 263 n n 
C5B H51A NAP sing 264 n n 
C5B H52A NAP sing 265 n n 
C4B O4B NAP sing 266 n n 
C4B C3B NAP sing 267 n n 
C4B H4B NAP sing 268 n n 
O4B C1B NAP sing 269 n n 
C3B O3B NAP sing 270 n n 
C3B C2B NAP sing 271 n n 
C3B H3B NAP sing 272 n n 
O3B HO3A NAP sing 273 n n 
C2B O2B NAP sing 274 n n 
C2B C1B NAP sing 275 n n 
C2B H2B NAP sing 276 n n 
O2B P2B NAP sing 277 n n 
C1B N9A NAP sing 278 n n 
C1B H1B NAP sing 279 n n 
N9A C8A NAP sing 280 n y 
N9A C4A NAP sing 281 n y 
C8A N7A NAP doub 282 n y 
C8A H8A NAP sing 283 n n 
N7A C5A NAP sing 284 n y 
C5A C6A NAP sing 285 n y 
C5A C4A NAP doub 286 n y 
C6A N6A NAP sing 287 n n 
C6A N1A NAP doub 288 n y 
N6A H61A NAP sing 289 n n 
N6A H62A NAP sing 290 n n 
N1A C2A NAP sing 291 n y 
C2A N3A NAP doub 292 n y 
C2A H2A NAP sing 293 n n 
N3A C4A NAP sing 294 n y 
O3 PN NAP sing 295 n n 
PN O1N NAP doub 296 n n 
PN O2N NAP sing 297 n n 
PN O5D NAP sing 298 n n 
O5D C5D NAP sing 299 n n 
C5D C4D NAP sing 300 n n 
C5D H51N NAP sing 301 n n 
C5D H52N NAP sing 302 n n 
C4D O4D NAP sing 303 n n 
C4D C3D NAP sing 304 n n 
C4D H4D NAP sing 305 n n 
O4D C1D NAP sing 306 n n 
C3D O3D NAP sing 307 n n 
C3D C2D NAP sing 308 n n 
C3D H3D NAP sing 309 n n 
O3D HO3N NAP sing 310 n n 
C2D O2D NAP sing 311 n n 
C2D C1D NAP sing 312 n n 
C2D H2D NAP sing 313 n n 
O2D HO2N NAP sing 314 n n 
C1D N1N NAP sing 315 n n 
C1D H1D NAP sing 316 n n 
N1N C2N NAP sing 317 n y 
N1N C6N NAP doub 318 n y 
C2N C3N NAP doub 319 n y 
C2N H2N NAP sing 320 n n 
C3N C7N NAP sing 321 n n 
C3N C4N NAP sing 322 n y 
C7N O7N NAP doub 323 n n 
C7N N7N NAP sing 324 n n 
N7N H71N NAP sing 325 n n 
N7N H72N NAP sing 326 n n 
C4N C5N NAP doub 327 n y 
C4N H4N NAP sing 328 n n 
C5N C6N NAP sing 329 n y 
C5N H5N NAP sing 330 n n 
C6N H6N NAP sing 331 n n 
P2B O1X NAP doub 332 n n 
P2B O2X NAP sing 333 n n 
P2B O3X NAP sing 334 n n 
O2X HOP2 NAP sing 335 n n 
O3X HOP3 NAP sing 336 n n 
#
_atom_sites.entry_id                     4AOU 
_atom_sites.fract_transf_matrix[1][1]    0.00774 
_atom_sites.fract_transf_matrix[1][2]    0.004469 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ICT A 1 1403 1403 ICT ICT . 
C 3 MG A 1 1404 1404 MG MG . 
D 4 NAP A 1 1520 1520 NAP NAP . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 4 -55.987 16.185 -20.301 1 48.13 ? PA NAP 1520 A 1 
HETATM 2 O O1A NAP . . . D 4 -56.372 15.314 -19.147 1 52.21 ? O1A NAP 1520 A 1 
HETATM 3 O O2A NAP . . . D 4 -55.521 17.523 -19.885 1 47.12 ? O2A NAP 1520 A 1 
HETATM 4 O O5B NAP . . . D 4 -57.267 16.329 -21.268 1 48.55 ? O5B NAP 1520 A 1 
HETATM 5 C C5B NAP . . . D 4 -57.715 15.144 -21.9 1 46.96 ? C5B NAP 1520 A 1 
HETATM 6 C C4B NAP . . . D 4 -59.169 15.323 -22.339 1 46.98 ? C4B NAP 1520 A 1 
HETATM 7 O O4B NAP . . . D 4 -60.093 14.688 -21.432 1 46.44 ? O4B NAP 1520 A 1 
HETATM 8 C C3B NAP . . . D 4 -59.586 16.795 -22.478 1 44.42 ? C3B NAP 1520 A 1 
HETATM 9 O O3B NAP . . . D 4 -59.26 17.348 -23.751 1 41.15 ? O3B NAP 1520 A 1 
HETATM 10 C C2B NAP . . . D 4 -61.075 16.639 -22.227 1 45.14 ? C2B NAP 1520 A 1 
HETATM 11 O O2B NAP . . . D 4 -61.617 16.046 -23.377 1 47.45 ? O2B NAP 1520 A 1 
HETATM 12 C C1B NAP . . . D 4 -61.185 15.555 -21.157 1 43.33 ? C1B NAP 1520 A 1 
HETATM 13 N N9A NAP . . . D 4 -61.007 16.22 -19.852 1 42.77 ? N9A NAP 1520 A 1 
HETATM 14 C C8A NAP . . . D 4 -59.891 16.183 -19.047 1 40.2 ? C8A NAP 1520 A 1 
HETATM 15 N N7A NAP . . . D 4 -60.096 16.965 -17.963 1 38.81 ? N7A NAP 1520 A 1 
HETATM 16 C C5A NAP . . . D 4 -61.316 17.534 -18.068 1 41.73 ? C5A NAP 1520 A 1 
HETATM 17 C C6A NAP . . . D 4 -62.017 18.415 -17.236 1 44.51 ? C6A NAP 1520 A 1 
HETATM 18 N N6A NAP . . . D 4 -61.469 18.868 -16.077 1 41.76 ? N6A NAP 1520 A 1 
HETATM 19 N N1A NAP . . . D 4 -63.288 18.827 -17.642 1 43.93 ? N1A NAP 1520 A 1 
HETATM 20 C C2A NAP . . . D 4 -63.838 18.377 -18.817 1 42.63 ? C2A NAP 1520 A 1 
HETATM 21 N N3A NAP . . . D 4 -63.127 17.523 -19.621 1 42.68 ? N3A NAP 1520 A 1 
HETATM 22 C C4A NAP . . . D 4 -61.896 17.096 -19.255 1 42.52 ? C4A NAP 1520 A 1 
HETATM 23 O O3 NAP . . . D 4 -54.933 15.342 -21.183 1 45.38 ? O3 NAP 1520 A 1 
HETATM 24 P PN NAP . . . D 4 -54.009 15.707 -22.447 1 45.55 ? PN NAP 1520 A 1 
HETATM 25 O O1N NAP . . . D 4 -53.529 14.383 -22.894 1 49.31 ? O1N NAP 1520 A 1 
HETATM 26 O O2N NAP . . . D 4 -54.744 16.602 -23.408 1 45.37 ? O2N NAP 1520 A 1 
HETATM 27 O O5D NAP . . . D 4 -52.738 16.527 -21.848 1 45.45 ? O5D NAP 1520 A 1 
HETATM 28 C C5D NAP . . . D 4 -52.661 17.935 -22.006 1 48.58 ? C5D NAP 1520 A 1 
HETATM 29 C C4D NAP . . . D 4 -51.416 18.435 -21.285 1 52.81 ? C4D NAP 1520 A 1 
HETATM 30 O O4D NAP . . . D 4 -51.522 18.111 -19.891 1 54.1 ? O4D NAP 1520 A 1 
HETATM 31 C C3D NAP . . . D 4 -50.17 17.707 -21.829 1 55.11 ? C3D NAP 1520 A 1 
HETATM 32 O O3D NAP . . . D 4 -49.184 18.606 -22.304 1 56.38 ? O3D NAP 1520 A 1 
HETATM 33 C C2D NAP . . . D 4 -49.657 16.862 -20.658 1 54.42 ? C2D NAP 1520 A 1 
HETATM 34 O O2D NAP . . . D 4 -48.256 16.892 -20.532 1 53.12 ? O2D NAP 1520 A 1 
HETATM 35 C C1D NAP . . . D 4 -50.304 17.511 -19.44 1 53.09 ? C1D NAP 1520 A 1 
HETATM 36 N N1N NAP . . . D 4 -50.506 16.515 -18.391 1 51.84 ? N1N NAP 1520 A 1 
HETATM 37 C C2N NAP . . . D 4 -50.438 16.927 -17.188 0 75.16 ? C2N NAP 1520 A 1 
HETATM 38 C C3N NAP . . . D 4 -50.956 16.162 -16.179 0 79.05 ? C3N NAP 1520 A 1 
HETATM 39 C C7N NAP . . . D 4 -50.654 16.5 -14.764 0 79.37 ? C7N NAP 1520 A 1 
HETATM 40 O O7N NAP . . . D 4 -51.13 15.578 -13.801 0 80.74 ? O7N NAP 1520 A 1 
HETATM 41 N N7N NAP . . . D 4 -49.987 17.608 -14.501 0 77.71 ? N7N NAP 1520 A 1 
HETATM 42 C C4N NAP . . . D 4 -51.692 15.005 -16.48 0 80.12 ? C4N NAP 1520 A 1 
HETATM 43 C C5N NAP . . . D 4 -51.864 14.612 -17.812 0 78.6 ? C5N NAP 1520 A 1 
HETATM 44 C C6N NAP . . . D 4 -51.336 15.377 -18.819 0 75.82 ? C6N NAP 1520 A 1 
HETATM 45 P P2B NAP . . . D 4 -62.407 16.774 -24.573 1 46.69 ? P2B NAP 1520 A 1 
HETATM 46 O O1X NAP . . . D 4 -62.826 15.529 -25.297 1 43.08 ? O1X NAP 1520 A 1 
HETATM 47 O O2X NAP . . . D 4 -63.635 17.561 -24.131 1 45.89 ? O2X NAP 1520 A 1 
HETATM 48 O O3X NAP . . . D 4 -61.475 17.674 -25.393 1 46.74 ? O3X NAP 1520 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#