data_4AP0 # _model_server_result.job_id 9YYqveWL55rkdU2NEkURpg _model_server_result.datetime_utc '2024-11-25 17:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ap0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2001}' # _entry.id 4AP0 # _exptl.entry_id 4AP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 517.062 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISPINESIB MESILATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 4AP0 _cell.length_a 64.723 _cell.length_b 112.607 _cell.length_c 106.913 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,W 1 1 B,J,K,L,M,N,O,X 2 1 C,P,Q,R,Y 3 1 D,S,T,U,V,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 O N N ? 5 R N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 114 A THR 112 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 E MG MG . A MG 1001 1_555 F O3B ADP . A ADP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 E MG MG . A MG 1001 1_555 W O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 E MG MG . A MG 1001 1_555 W O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 E MG MG . A MG 1001 1_555 W O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc6 B OG1 THR 114 B THR 112 1_555 J MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 J MG MG . B MG 1001 1_555 K O3B ADP . B ADP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc8 J MG MG . B MG 1001 1_555 X O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 J MG MG . B MG 1001 1_555 X O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 J MG MG . B MG 1001 1_555 X O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 C OG1 THR 114 C THR 112 1_555 P MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 P MG MG . C MG 1001 1_555 Q O3B ADP . C ADP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 P MG MG . C MG 1001 1_555 Y O HOH . C HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc14 P MG MG . C MG 1001 1_555 Y O HOH . C HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc15 P MG MG . C MG 1001 1_555 Y O HOH . C HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc16 D OG1 THR 114 D THR 112 1_555 S MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc17 S MG MG . D MG 1001 1_555 T O3B ADP . D ADP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc18 S MG MG . D MG 1001 1_555 Z O HOH . D HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc19 S MG MG . D MG 1001 1_555 Z O HOH . D HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc20 S MG MG . D MG 1001 1_555 Z O HOH . D HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'C30 H33 Cl N4 O2' _chem_comp.formula_weight 517.062 _chem_comp.id G7X _chem_comp.mon_nstd_flag . _chem_comp.name 'ISPINESIB MESILATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAO G7X sing 127 n y CAN CAM G7X doub 128 n y CAO CAY G7X doub 129 n y CAY CAZ G7X sing 130 n n CAY CAX G7X sing 131 n y CAX CAW G7X doub 132 n y CAW CAM G7X sing 133 n y CAM CAL G7X sing 134 n n CAL OAV G7X doub 135 n n CAL NAK G7X sing 136 n n NAK CAU G7X sing 137 n n NAK CAJ G7X sing 138 n n CAU CBC G7X sing 139 n n CBC CBD G7X sing 140 n n CBD NBE G7X sing 141 n n CAJ CAB G7X sing 142 n n CAJ CAI G7X sing 143 n n CAB CAA G7X sing 144 n n CAB CAC G7X sing 145 n n CAI NAH G7X doub 146 n n CAI NAT G7X sing 147 n n NAH CAG G7X sing 148 n n CAG CAF G7X sing 149 n y CAG CAR G7X doub 150 n y CAF CAE G7X doub 151 n y CAE CLD G7X sing 152 n n CAE CAP G7X sing 153 n y CAP CAQ G7X doub 154 n y CAQ CAR G7X sing 155 n y CAR CAS G7X sing 156 n n CAS OBA G7X doub 157 n n CAS NAT G7X sing 158 n n NAT CBB G7X sing 159 n n CBB CBG G7X sing 160 n n CBG CBH G7X sing 161 n y CBG CBF G7X doub 162 n y CBH CBK G7X doub 163 n y CBK CBJ G7X sing 164 n y CBJ CBI G7X doub 165 n y CBI CBF G7X sing 166 n y CAN HAN G7X sing 167 n n CAO HAO G7X sing 168 n n CAZ HAZ1 G7X sing 169 n n CAZ HAZ2 G7X sing 170 n n CAZ HAZ3 G7X sing 171 n n CAX HAX G7X sing 172 n n CAW HAW G7X sing 173 n n CAU HAU1 G7X sing 174 n n CAU HAU2 G7X sing 175 n n CAJ HAJ G7X sing 176 n n CBC HBC1 G7X sing 177 n n CBC HBC2 G7X sing 178 n n CBD HBD1 G7X sing 179 n n CBD HBD2 G7X sing 180 n n NBE HBE1 G7X sing 181 n n NBE HBE2 G7X sing 182 n n CAB HAB G7X sing 183 n n CAA HAA1 G7X sing 184 n n CAA HAA2 G7X sing 185 n n CAA HAA3 G7X sing 186 n n CAC HAC1 G7X sing 187 n n CAC HAC2 G7X sing 188 n n CAC HAC3 G7X sing 189 n n CAF HAF G7X sing 190 n n CAP HAP G7X sing 191 n n CAQ HAQ G7X sing 192 n n CBB HBB1 G7X sing 193 n n CBB HBB2 G7X sing 194 n n CBH HBH G7X sing 195 n n CBF HBF G7X sing 196 n n CBK HBK G7X sing 197 n n CBJ HBJ G7X sing 198 n n CBI HBI G7X sing 199 n n # _atom_sites.entry_id 4AP0 _atom_sites.fract_transf_matrix[1][1] 0.01545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 1001 1001 MG MG . F 3 ADP A 1 1003 1003 ADP ADP . G 4 CL A 1 1367 1367 CL CL . H 4 CL A 1 1368 1368 CL CL . I 5 G7X A 1 2001 2001 G7X G7X . J 2 MG B 1 1001 1001 MG MG . K 3 ADP B 1 1003 1003 ADP ADP . L 4 CL B 1 1360 1360 CL CL . M 4 CL B 1 1361 1361 CL CL . N 4 CL B 1 1362 1362 CL CL . O 5 G7X B 1 2001 2001 G7X G7X . P 2 MG C 1 1001 1001 MG MG . Q 3 ADP C 1 1003 1003 ADP ADP . R 5 G7X C 1 2001 2001 G7X G7X . S 2 MG D 1 1001 1001 MG MG . T 3 ADP D 1 1003 1003 ADP ADP . U 4 CL D 1 1365 1365 CL CL . V 5 G7X D 1 2001 2001 G7X G7X . W 6 HOH A 1 2000 2000 HOH HOH . W 6 HOH A 2 2002 2002 HOH HOH . W 6 HOH A 3 2003 2003 HOH HOH . W 6 HOH A 4 2004 2004 HOH HOH . W 6 HOH A 5 2005 2005 HOH HOH . W 6 HOH A 6 2006 2006 HOH HOH . W 6 HOH A 7 2007 2007 HOH HOH . W 6 HOH A 8 2008 2008 HOH HOH . W 6 HOH A 9 2009 2009 HOH HOH . X 6 HOH B 1 2000 2000 HOH HOH . X 6 HOH B 2 2002 2002 HOH HOH . X 6 HOH B 3 2003 2003 HOH HOH . X 6 HOH B 4 2004 2004 HOH HOH . X 6 HOH B 5 2005 2005 HOH HOH . X 6 HOH B 6 2006 2006 HOH HOH . Y 6 HOH C 1 2000 2000 HOH HOH . Y 6 HOH C 2 2002 2002 HOH HOH . Y 6 HOH C 3 2003 2003 HOH HOH . Y 6 HOH C 4 2004 2004 HOH HOH . Y 6 HOH C 5 2005 2005 HOH HOH . Y 6 HOH C 6 2006 2006 HOH HOH . Y 6 HOH C 7 2007 2007 HOH HOH . Y 6 HOH C 8 2008 2008 HOH HOH . Y 6 HOH C 9 2009 2009 HOH HOH . Y 6 HOH C 10 2010 2010 HOH HOH . Z 6 HOH D 1 2000 2000 HOH HOH . Z 6 HOH D 2 2002 2002 HOH HOH . Z 6 HOH D 3 2003 2003 HOH HOH . Z 6 HOH D 4 2004 2004 HOH HOH . Z 6 HOH D 5 2005 2005 HOH HOH . Z 6 HOH D 6 2006 2006 HOH HOH . Z 6 HOH D 7 2007 2007 HOH HOH . Z 6 HOH D 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN G7X . . . V 5 8.496 -4.552 61.761 1 44.4 ? CAN G7X 2001 D 1 HETATM 2 C CAO G7X . . . V 5 9.31 -5.369 62.544 1 41.32 ? CAO G7X 2001 D 1 HETATM 3 C CAY G7X . . . V 5 10.323 -4.821 63.32 1 30.29 ? CAY G7X 2001 D 1 HETATM 4 C CAZ G7X . . . V 5 11.217 -5.758 64.145 1 26.73 ? CAZ G7X 2001 D 1 HETATM 5 C CAX G7X . . . V 5 10.518 -3.44 63.336 1 30.13 ? CAX G7X 2001 D 1 HETATM 6 C CAW G7X . . . V 5 9.695 -2.619 62.559 1 25.25 ? CAW G7X 2001 D 1 HETATM 7 C CAM G7X . . . V 5 8.679 -3.177 61.783 1 33.2 ? CAM G7X 2001 D 1 HETATM 8 C CAL G7X . . . V 5 7.811 -2.261 60.93 1 40.82 ? CAL G7X 2001 D 1 HETATM 9 O OAV G7X . . . V 5 8.048 -2.152 59.726 1 45.88 ? OAV G7X 2001 D 1 HETATM 10 N NAK G7X . . . V 5 6.844 -1.579 61.543 1 57.06 ? NAK G7X 2001 D 1 HETATM 11 C CAU G7X . . . V 5 6.019 -0.628 60.786 1 67.11 ? CAU G7X 2001 D 1 HETATM 12 C CBC G7X . . . V 5 6.836 0.672 60.593 1 69.21 ? CBC G7X 2001 D 1 HETATM 13 C CBD G7X . . . V 5 7.989 0.511 59.577 1 58.8 ? CBD G7X 2001 D 1 HETATM 14 N NBE G7X . . . V 5 8.75 1.767 59.423 1 46.64 ? NBE G7X 2001 D 1 HETATM 15 C CAJ G7X . . . V 5 6.511 -1.725 62.973 1 61.65 ? CAJ G7X 2001 D 1 HETATM 16 C CAB G7X . . . V 5 5.094 -2.285 63.07 1 45.69 ? CAB G7X 2001 D 1 HETATM 17 C CAA G7X . . . V 5 4.905 -3.51 62.17 1 50.34 ? CAA G7X 2001 D 1 HETATM 18 C CAC G7X . . . V 5 4.761 -2.626 64.517 1 61.85 ? CAC G7X 2001 D 1 HETATM 19 C CAI G7X . . . V 5 6.557 -0.345 63.62 1 58.5 ? CAI G7X 2001 D 1 HETATM 20 N NAH G7X . . . V 5 5.517 0.464 63.392 1 43.44 ? NAH G7X 2001 D 1 HETATM 21 C CAG G7X . . . V 5 5.449 1.706 63.888 1 52.26 ? CAG G7X 2001 D 1 HETATM 22 C CAF G7X . . . V 5 4.331 2.487 63.592 1 51.12 ? CAF G7X 2001 D 1 HETATM 23 C CAE G7X . . . V 5 4.232 3.777 64.091 1 51.99 ? CAE G7X 2001 D 1 HETATM 24 CL CLD G7X . . . V 5 2.819 4.722 63.715 1 50.67 ? CLD G7X 2001 D 1 HETATM 25 C CAP G7X . . . V 5 5.263 4.28 64.889 1 41.95 ? CAP G7X 2001 D 1 HETATM 26 C CAQ G7X . . . V 5 6.385 3.497 65.183 1 33.75 ? CAQ G7X 2001 D 1 HETATM 27 C CAR G7X . . . V 5 6.479 2.204 64.68 1 43.38 ? CAR G7X 2001 D 1 HETATM 28 C CAS G7X . . . V 5 7.579 1.388 64.94 1 45.41 ? CAS G7X 2001 D 1 HETATM 29 O OBA G7X . . . V 5 8.535 1.736 65.627 1 28.48 ? OBA G7X 2001 D 1 HETATM 30 N NAT G7X . . . V 5 7.612 0.116 64.41 1 59.84 ? NAT G7X 2001 D 1 HETATM 31 C CBB G7X . . . V 5 8.779 -0.732 64.716 1 54.74 ? CBB G7X 2001 D 1 HETATM 32 C CBG G7X . . . V 5 8.409 -1.702 65.854 1 26.71 ? CBG G7X 2001 D 1 HETATM 33 C CBH G7X . . . V 5 7.943 -1.208 67.077 1 29.21 ? CBH G7X 2001 D 1 HETATM 34 C CBK G7X . . . V 5 7.614 -2.101 68.107 1 34.56 ? CBK G7X 2001 D 1 HETATM 35 C CBJ G7X . . . V 5 7.759 -3.488 67.922 1 34.66 ? CBJ G7X 2001 D 1 HETATM 36 C CBI G7X . . . V 5 8.235 -3.985 66.703 1 32.26 ? CBI G7X 2001 D 1 HETATM 37 C CBF G7X . . . V 5 8.554 -3.086 65.673 1 25.37 ? CBF G7X 2001 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #