data_4AP6
#
_model_server_result.job_id            KP1Zc2VNK8KLzciO3A1J3w 
_model_server_result.datetime_utc      '2024-11-23 18:48:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ap6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1432}' 
#
_entry.id    4AP6 
#
_exptl.entry_id    4AP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AP6 
_cell.length_a            153.01 
_cell.length_b            153.01 
_cell.length_c            185.68 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,S 1 1 
B,H,I,J,K,L,T 2 1 
C,M,N,O,P 3 1 
D,Q,R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 154 A CYS 161 1_555 A SG CYS 185 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 A SG CYS 405 A CYS 412 1_555 A SG CYS 412 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 B SG CYS 154 B CYS 161 1_555 B SG CYS 185 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 B SG CYS 405 B CYS 412 1_555 B SG CYS 412 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 C SG CYS 154 C CYS 161 1_555 C SG CYS 185 C CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 C SG CYS 405 C CYS 412 1_555 C SG CYS 412 C CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf7 D SG CYS 154 D CYS 161 1_555 D SG CYS 185 D CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 D SG CYS 405 D CYS 412 1_555 D SG CYS 412 D CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
covale ? covale1 A ND2 ASN 202 A ASN 209 1_555 F C1 NAG . A NAG 1431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B ND2 ASN 182 B ASN 189 1_555 I C1 NAG . B NAG 1431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale3 B ND2 ASN 202 B ASN 209 1_555 J C1 NAG . B NAG 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale4 B ND2 ASN 252 B ASN 259 1_555 K C1 NAG . B NAG 1433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale5 C ND2 ASN 182 C ASN 189 1_555 N C1 NAG . C NAG 1431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 C ND2 ASN 202 C ASN 209 1_555 O C1 NAG . C NAG 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 303 n n 
C1 O1 NAG sing 304 n n 
C1 O5 NAG sing 305 n n 
C1 H1 NAG sing 306 n n 
C2 C3 NAG sing 307 n n 
C2 N2 NAG sing 308 n n 
C2 H2 NAG sing 309 n n 
C3 C4 NAG sing 310 n n 
C3 O3 NAG sing 311 n n 
C3 H3 NAG sing 312 n n 
C4 C5 NAG sing 313 n n 
C4 O4 NAG sing 314 n n 
C4 H4 NAG sing 315 n n 
C5 C6 NAG sing 316 n n 
C5 O5 NAG sing 317 n n 
C5 H5 NAG sing 318 n n 
C6 O6 NAG sing 319 n n 
C6 H61 NAG sing 320 n n 
C6 H62 NAG sing 321 n n 
C7 C8 NAG sing 322 n n 
C7 N2 NAG sing 323 n n 
C7 O7 NAG doub 324 n n 
C8 H81 NAG sing 325 n n 
C8 H82 NAG sing 326 n n 
C8 H83 NAG sing 327 n n 
N2 HN2 NAG sing 328 n n 
O1 HO1 NAG sing 329 n n 
O3 HO3 NAG sing 330 n n 
O4 HO4 NAG sing 331 n n 
O6 HO6 NAG sing 332 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4AP6 
_atom_sites.fract_transf_matrix[1][1]    0.006536 
_atom_sites.fract_transf_matrix[1][2]    0.003773 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007547 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005386 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GFB A 1 1430 1430 GFB GFB . 
F 3 NAG A 1 1431 1431 NAG NAG . 
G 4 CL A 1 1432 1432 CL CL . 
H 2 GFB B 1 1430 1430 GFB GFB . 
I 3 NAG B 1 1431 1431 NAG NAG . 
J 3 NAG B 1 1432 1432 NAG NAG . 
K 3 NAG B 1 1433 1433 NAG NAG . 
L 4 CL B 1 1434 1434 CL CL . 
M 2 GFB C 1 1430 1430 GFB GFB . 
N 3 NAG C 1 1431 1431 NAG NAG . 
O 3 NAG C 1 1432 1432 NAG NAG . 
P 4 CL C 1 1433 1433 CL CL . 
Q 2 GFB D 1 1430 1430 GFB GFB . 
R 4 CL D 1 1431 1431 CL CL . 
S 5 HOH A 1 2001 2001 HOH HOH . 
S 5 HOH A 2 2002 2002 HOH HOH . 
S 5 HOH A 3 2003 2003 HOH HOH . 
S 5 HOH A 4 2004 2004 HOH HOH . 
S 5 HOH A 5 2005 2005 HOH HOH . 
S 5 HOH A 6 2006 2006 HOH HOH . 
T 5 HOH B 1 2001 2001 HOH HOH . 
T 5 HOH B 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 3 23.495 -112.573 29.457 1 190.3 ? C1 NAG 1432 C 1 
HETATM 2 C C2 NAG . . . O 3 22.481 -113.641 29.852 1 198.71 ? C2 NAG 1432 C 1 
HETATM 3 C C3 NAG . . . O 3 23.059 -114.59 30.898 1 202.88 ? C3 NAG 1432 C 1 
HETATM 4 C C4 NAG . . . O 3 24.464 -115.063 30.528 1 204.51 ? C4 NAG 1432 C 1 
HETATM 5 C C5 NAG . . . O 3 25.33 -113.885 30.102 1 206.52 ? C5 NAG 1432 C 1 
HETATM 6 C C6 NAG . . . O 3 26.678 -114.348 29.583 1 204.3 ? C6 NAG 1432 C 1 
HETATM 7 C C7 NAG . . . O 3 20.089 -113.237 29.789 1 209.14 ? C7 NAG 1432 C 1 
HETATM 8 C C8 NAG . . . O 3 18.888 -112.597 30.425 1 204.37 ? C8 NAG 1432 C 1 
HETATM 9 N N2 NAG . . . O 3 21.27 -113.02 30.362 1 203.83 ? N2 NAG 1432 C 1 
HETATM 10 O O3 NAG . . . O 3 22.202 -115.701 31.039 1 204.63 ? O3 NAG 1432 C 1 
HETATM 11 O O4 NAG . . . O 3 25.076 -115.726 31.62 1 199.63 ? O4 NAG 1432 C 1 
HETATM 12 O O5 NAG . . . O 3 24.707 -113.166 29.066 1 201.2 ? O5 NAG 1432 C 1 
HETATM 13 O O6 NAG . . . O 3 26.983 -113.552 28.463 1 198.27 ? O6 NAG 1432 C 1 
HETATM 14 O O7 NAG . . . O 3 19.966 -113.93 28.783 1 213.68 ? O7 NAG 1432 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#