data_4APD # _model_server_result.job_id BtNLYVnbiolRlyt_tVKQeQ _model_server_result.datetime_utc '2024-11-26 23:35:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4apd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1038}' # _entry.id 4APD # _exptl.entry_id 4APD _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 385.538 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-hexadecanoyl-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4APD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4APD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 20 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 26 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C07 _struct_conn.ptnr2_label_comp_id D6M _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id D6M _struct_conn.ptnr2_auth_seq_id 1038 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H39 N O5' _chem_comp.formula_weight 385.538 _chem_comp.id D6M _chem_comp.mon_nstd_flag . _chem_comp.name 'N-hexadecanoyl-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 D6M doub 54 n n C02 N03 D6M sing 55 n n C02 C12 D6M sing 56 n n N03 C04 D6M sing 57 n n C04 C05 D6M sing 58 n n C04 C09 D6M sing 59 n n C05 C06 D6M sing 60 n n C06 C07 D6M sing 61 n n C07 O08 D6M doub 62 n n C07 OXT D6M sing 63 n n C09 O10 D6M doub 64 n n C09 O11 D6M sing 65 n n C12 C13 D6M sing 66 n n C13 C14 D6M sing 67 n n C14 C15 D6M sing 68 n n C15 C16 D6M sing 69 n n C16 C17 D6M sing 70 n n C17 C18 D6M sing 71 n n C18 C19 D6M sing 72 n n C19 C20 D6M sing 73 n n C20 C21 D6M sing 74 n n C21 C22 D6M sing 75 n n C22 C23 D6M sing 76 n n C23 C24 D6M sing 77 n n C24 C25 D6M sing 78 n n C25 C26 D6M sing 79 n n N03 H03 D6M sing 80 n n C12 H121 D6M sing 81 n n C12 H122 D6M sing 82 n n C04 H04 D6M sing 83 n n C05 H051 D6M sing 84 n n C05 H052 D6M sing 85 n n C06 H061 D6M sing 86 n n C06 H062 D6M sing 87 n n OXT HX0 D6M sing 88 n n O11 H11 D6M sing 89 n n C13 H131 D6M sing 90 n n C13 H132 D6M sing 91 n n C14 H141 D6M sing 92 n n C14 H142 D6M sing 93 n n C15 H151 D6M sing 94 n n C15 H152 D6M sing 95 n n C16 H161 D6M sing 96 n n C16 H162 D6M sing 97 n n C17 H171 D6M sing 98 n n C17 H172 D6M sing 99 n n C18 H181 D6M sing 100 n n C18 H182 D6M sing 101 n n C19 H191 D6M sing 102 n n C19 H192 D6M sing 103 n n C20 H201 D6M sing 104 n n C20 H202 D6M sing 105 n n C21 H211 D6M sing 106 n n C21 H212 D6M sing 107 n n C22 H221 D6M sing 108 n n C22 H222 D6M sing 109 n n C23 H231 D6M sing 110 n n C23 H232 D6M sing 111 n n C24 H241 D6M sing 112 n n C24 H242 D6M sing 113 n n C25 H251 D6M sing 114 n n C25 H252 D6M sing 115 n n C26 H261 D6M sing 116 n n C26 H262 D6M sing 117 n n C26 H263 D6M sing 118 n n # _atom_sites.entry_id 4APD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id D6M _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1038 _pdbx_nonpoly_scheme.auth_seq_num 1038 _pdbx_nonpoly_scheme.pdb_mon_id D6M _pdbx_nonpoly_scheme.auth_mon_id D6M _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 D6M . . . B 2 8.786 -5.384 -4.119 1 0 ? O01 D6M 1038 A 1 HETATM 2 C C02 D6M . . . B 2 8.11 -5.841 -3.197 1 0 ? C02 D6M 1038 A 1 HETATM 3 N N03 D6M . . . B 2 6.816 -6.109 -3.374 1 0 ? N03 D6M 1038 A 1 HETATM 4 C C04 D6M . . . B 2 6.144 -5.881 -4.652 1 0 ? C04 D6M 1038 A 1 HETATM 5 C C05 D6M . . . B 2 5.791 -4.4 -4.812 1 0 ? C05 D6M 1038 A 1 HETATM 6 C C06 D6M . . . B 2 4.309 -4.115 -4.626 1 0 ? C06 D6M 1038 A 1 HETATM 7 C C07 D6M . . . B 2 4.044 -2.864 -3.812 1 0 ? C07 D6M 1038 A 1 HETATM 8 O O08 D6M . . . B 2 4.597 -2.749 -2.718 1 0 ? O08 D6M 1038 A 1 HETATM 9 C C09 D6M . . . B 2 6.999 -6.349 -5.829 1 0 ? C09 D6M 1038 A 1 HETATM 10 O O10 D6M . . . B 2 7.898 -7.188 -5.61 1 0 ? O10 D6M 1038 A 1 HETATM 11 O O11 D6M . . . B 2 6.762 -5.872 -6.959 1 0 ? O11 D6M 1038 A 1 HETATM 12 C C12 D6M . . . B 2 8.799 -6.129 -1.877 1 0 ? C12 D6M 1038 A 1 HETATM 13 C C13 D6M . . . B 2 10.091 -5.342 -1.703 1 0 ? C13 D6M 1038 A 1 HETATM 14 C C14 D6M . . . B 2 11.3 -6.261 -1.584 1 0 ? C14 D6M 1038 A 1 HETATM 15 C C15 D6M . . . B 2 12.28 -6.051 -2.729 1 0 ? C15 D6M 1038 A 1 HETATM 16 C C16 D6M . . . B 2 13.539 -5.337 -2.264 1 0 ? C16 D6M 1038 A 1 HETATM 17 C C17 D6M . . . B 2 13.272 -3.869 -1.972 1 0 ? C17 D6M 1038 A 1 HETATM 18 C C18 D6M . . . B 2 13.317 -3.03 -3.24 1 0 ? C18 D6M 1038 A 1 HETATM 19 C C19 D6M . . . B 2 12.11 -2.113 -3.343 1 0 ? C19 D6M 1038 A 1 HETATM 20 C C20 D6M . . . B 2 12.446 -0.826 -4.078 1 0 ? C20 D6M 1038 A 1 HETATM 21 C C21 D6M . . . B 2 11.223 -0.245 -4.768 1 0 ? C21 D6M 1038 A 1 HETATM 22 C C22 D6M . . . B 2 11.294 1.271 -4.841 1 0 ? C22 D6M 1038 A 1 HETATM 23 C C23 D6M . . . B 2 11.059 1.908 -3.48 1 0 ? C23 D6M 1038 A 1 HETATM 24 C C24 D6M . . . B 2 12.03 3.051 -3.223 1 0 ? C24 D6M 1038 A 1 HETATM 25 C C25 D6M . . . B 2 11.315 4.284 -2.697 1 0 ? C25 D6M 1038 A 1 HETATM 26 C C26 D6M . . . B 2 12.26 5.455 -2.54 1 0 ? C26 D6M 1038 A 1 HETATM 27 H H03 D6M . . . B 2 6.263 -6.287 -2.584 1 0 ? H03 D6M 1038 A 1 HETATM 28 H H04 D6M . . . B 2 5.23 -6.454 -4.644 1 0 ? H04 D6M 1038 A 1 HETATM 29 H HP21 D6M . . . B 2 9.024 -7.184 -1.829 1 0 ? HP21 D6M 1038 A 1 HETATM 30 H HP22 D6M . . . B 2 8.126 -5.869 -1.074 1 0 ? HP22 D6M 1038 A 1 HETATM 31 H HQ31 D6M . . . B 2 6.342 -3.83 -4.08 1 0 ? HQ31 D6M 1038 A 1 HETATM 32 H HQ32 D6M . . . B 2 6.077 -4.074 -5.802 1 0 ? HQ32 D6M 1038 A 1 HETATM 33 H HQ21 D6M . . . B 2 3.854 -3.996 -5.598 1 0 ? HQ21 D6M 1038 A 1 HETATM 34 H HQ22 D6M . . . B 2 3.858 -4.955 -4.12 1 0 ? HQ22 D6M 1038 A 1 HETATM 35 H HP31 D6M . . . B 2 10.016 -4.745 -0.806 1 0 ? HP31 D6M 1038 A 1 HETATM 36 H HP32 D6M . . . B 2 10.225 -4.695 -2.556 1 0 ? HP32 D6M 1038 A 1 HETATM 37 H HP41 D6M . . . B 2 10.963 -7.288 -1.593 1 0 ? HP41 D6M 1038 A 1 HETATM 38 H HP42 D6M . . . B 2 11.803 -6.056 -0.651 1 0 ? HP42 D6M 1038 A 1 HETATM 39 H HP51 D6M . . . B 2 11.802 -5.458 -3.495 1 0 ? HP51 D6M 1038 A 1 HETATM 40 H HP52 D6M . . . B 2 12.554 -7.013 -3.135 1 0 ? HP52 D6M 1038 A 1 HETATM 41 H HP61 D6M . . . B 2 14.289 -5.411 -3.037 1 0 ? HP61 D6M 1038 A 1 HETATM 42 H HP62 D6M . . . B 2 13.899 -5.813 -1.364 1 0 ? HP62 D6M 1038 A 1 HETATM 43 H HP71 D6M . . . B 2 14.023 -3.507 -1.285 1 0 ? HP71 D6M 1038 A 1 HETATM 44 H HP72 D6M . . . B 2 12.295 -3.774 -1.523 1 0 ? HP72 D6M 1038 A 1 HETATM 45 H HP81 D6M . . . B 2 13.332 -3.689 -4.097 1 0 ? HP81 D6M 1038 A 1 HETATM 46 H HP82 D6M . . . B 2 14.213 -2.429 -3.231 1 0 ? HP82 D6M 1038 A 1 HETATM 47 H HP91 D6M . . . B 2 11.771 -1.87 -2.348 1 0 ? HP91 D6M 1038 A 1 HETATM 48 H HP92 D6M . . . B 2 11.324 -2.626 -3.877 1 0 ? HP92 D6M 1038 A 1 HETATM 49 H HPA1 D6M . . . B 2 13.203 -1.033 -4.819 1 0 ? HPA1 D6M 1038 A 1 HETATM 50 H HPA2 D6M . . . B 2 12.821 -0.105 -3.367 1 0 ? HPA2 D6M 1038 A 1 HETATM 51 H HPB1 D6M . . . B 2 10.34 -0.529 -4.214 1 0 ? HPB1 D6M 1038 A 1 HETATM 52 H HPB2 D6M . . . B 2 11.164 -0.642 -5.77 1 0 ? HPB2 D6M 1038 A 1 HETATM 53 H HPC1 D6M . . . B 2 10.539 1.624 -5.529 1 0 ? HPC1 D6M 1038 A 1 HETATM 54 H HPC2 D6M . . . B 2 12.271 1.559 -5.199 1 0 ? HPC2 D6M 1038 A 1 HETATM 55 H HPD1 D6M . . . B 2 11.188 1.157 -2.713 1 0 ? HPD1 D6M 1038 A 1 HETATM 56 H HPD2 D6M . . . B 2 10.051 2.291 -3.443 1 0 ? HPD2 D6M 1038 A 1 HETATM 57 H HPE1 D6M . . . B 2 12.529 3.302 -4.148 1 0 ? HPE1 D6M 1038 A 1 HETATM 58 H HPE2 D6M . . . B 2 12.76 2.733 -2.494 1 0 ? HPE2 D6M 1038 A 1 HETATM 59 H HPF1 D6M . . . B 2 10.882 4.058 -1.732 1 0 ? HPF1 D6M 1038 A 1 HETATM 60 H HPF2 D6M . . . B 2 10.536 4.565 -3.389 1 0 ? HPF2 D6M 1038 A 1 HETATM 61 H HPG1 D6M . . . B 2 12.778 5.627 -3.472 1 0 ? HPG1 D6M 1038 A 1 HETATM 62 H HPG2 D6M . . . B 2 12.979 5.237 -1.764 1 0 ? HPG2 D6M 1038 A 1 HETATM 63 H HPG3 D6M . . . B 2 11.698 6.338 -2.273 1 0 ? HPG3 D6M 1038 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 6416 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 63 #