data_4APJ # _model_server_result.job_id 35F9m4_VHIXUe_ZvDhB0pQ _model_server_result.datetime_utc '2024-11-04 23:00:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4apj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1631}' # _entry.id 4APJ # _exptl.entry_id 4APJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.436 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4APJ _cell.length_a 56.87 _cell.length_b 85.28 _cell.length_c 133.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4APJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 1632 NAG 3 n C NAG 2 B 2 NAG A 1633 NAG 3 n C BMA 3 B 3 BMA A 1634 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 152 1_555 A SG CYS 122 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 316 A CYS 352 1_555 A SG CYS 334 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 502 A CYS 538 1_555 A SG CYS 514 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 73 A ASN 109 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B C PCA 1 P PCA 1 1_555 B N GLY 2 P GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C16 H34 O8' _chem_comp.formula_weight 354.436 _chem_comp.id PE4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG4000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PE4 sing 313 n n O1 HO1 PE4 sing 314 n n C1 C2 PE4 sing 315 n n C1 H11 PE4 sing 316 n n C1 H12 PE4 sing 317 n n C2 O2 PE4 sing 318 n n C2 H21 PE4 sing 319 n n C2 H22 PE4 sing 320 n n O2 C3 PE4 sing 321 n n C3 C4 PE4 sing 322 n n C3 H31 PE4 sing 323 n n C3 H32 PE4 sing 324 n n C4 O3 PE4 sing 325 n n C4 H41 PE4 sing 326 n n C4 H42 PE4 sing 327 n n O3 C5 PE4 sing 328 n n C5 C6 PE4 sing 329 n n C5 H51 PE4 sing 330 n n C5 H52 PE4 sing 331 n n C6 O4 PE4 sing 332 n n C6 H61 PE4 sing 333 n n C6 H62 PE4 sing 334 n n O4 C7 PE4 sing 335 n n C7 C8 PE4 sing 336 n n C7 H71 PE4 sing 337 n n C7 H72 PE4 sing 338 n n C8 O5 PE4 sing 339 n n C8 H81 PE4 sing 340 n n C8 H82 PE4 sing 341 n n O5 C9 PE4 sing 342 n n C9 C10 PE4 sing 343 n n C9 H91 PE4 sing 344 n n C9 H92 PE4 sing 345 n n C10 O6 PE4 sing 346 n n C10 H101 PE4 sing 347 n n C10 H102 PE4 sing 348 n n O6 C11 PE4 sing 349 n n C11 C12 PE4 sing 350 n n C11 H111 PE4 sing 351 n n C11 H112 PE4 sing 352 n n C12 O7 PE4 sing 353 n n C12 H121 PE4 sing 354 n n C12 H122 PE4 sing 355 n n O7 C13 PE4 sing 356 n n C13 C14 PE4 sing 357 n n C13 H131 PE4 sing 358 n n C13 H132 PE4 sing 359 n n C14 O8 PE4 sing 360 n n C14 H141 PE4 sing 361 n n C14 H142 PE4 sing 362 n n O8 C15 PE4 sing 363 n n C15 C16 PE4 sing 364 n n C15 H151 PE4 sing 365 n n C15 H152 PE4 sing 366 n n C16 H161 PE4 sing 367 n n C16 H162 PE4 sing 368 n n C16 H163 PE4 sing 369 n n # _atom_sites.entry_id 4APJ _atom_sites.fract_transf_matrix[1][1] 0.017584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL A 1 1625 1625 CL CL . E 5 SO4 A 1 1626 1626 SO4 SO4 . F 4 CL A 1 1627 1627 CL CL . G 4 CL A 1 1628 1628 CL CL . H 6 PE4 A 1 1629 1629 PE4 PE4 . I 6 PE4 A 1 1630 1630 PE4 PE4 . J 6 PE4 A 1 1631 1631 PE4 PE4 . K 7 ACT A 1 1635 1635 ACT ACT . L 8 HOH A 1 2001 2001 HOH HOH . L 8 HOH A 2 2002 2002 HOH HOH . L 8 HOH A 3 2003 2003 HOH HOH . L 8 HOH A 4 2004 2004 HOH HOH . L 8 HOH A 5 2005 2005 HOH HOH . L 8 HOH A 6 2006 2006 HOH HOH . L 8 HOH A 7 2007 2007 HOH HOH . L 8 HOH A 8 2008 2008 HOH HOH . L 8 HOH A 9 2009 2009 HOH HOH . L 8 HOH A 10 2010 2010 HOH HOH . L 8 HOH A 11 2011 2011 HOH HOH . L 8 HOH A 12 2012 2012 HOH HOH . L 8 HOH A 13 2013 2013 HOH HOH . L 8 HOH A 14 2014 2014 HOH HOH . L 8 HOH A 15 2015 2015 HOH HOH . L 8 HOH A 16 2016 2016 HOH HOH . L 8 HOH A 17 2017 2017 HOH HOH . L 8 HOH A 18 2018 2018 HOH HOH . L 8 HOH A 19 2019 2019 HOH HOH . L 8 HOH A 20 2020 2020 HOH HOH . L 8 HOH A 21 2021 2021 HOH HOH . L 8 HOH A 22 2022 2022 HOH HOH . L 8 HOH A 23 2023 2023 HOH HOH . L 8 HOH A 24 2024 2024 HOH HOH . L 8 HOH A 25 2025 2025 HOH HOH . L 8 HOH A 26 2026 2026 HOH HOH . L 8 HOH A 27 2027 2027 HOH HOH . L 8 HOH A 28 2028 2028 HOH HOH . L 8 HOH A 29 2029 2029 HOH HOH . L 8 HOH A 30 2030 2030 HOH HOH . L 8 HOH A 31 2031 2031 HOH HOH . L 8 HOH A 32 2032 2032 HOH HOH . L 8 HOH A 33 2033 2033 HOH HOH . L 8 HOH A 34 2034 2034 HOH HOH . L 8 HOH A 35 2035 2035 HOH HOH . L 8 HOH A 36 2036 2036 HOH HOH . L 8 HOH A 37 2037 2037 HOH HOH . L 8 HOH A 38 2038 2038 HOH HOH . L 8 HOH A 39 2039 2039 HOH HOH . L 8 HOH A 40 2040 2040 HOH HOH . L 8 HOH A 41 2041 2041 HOH HOH . L 8 HOH A 42 2042 2042 HOH HOH . L 8 HOH A 43 2043 2043 HOH HOH . L 8 HOH A 44 2044 2044 HOH HOH . L 8 HOH A 45 2045 2045 HOH HOH . L 8 HOH A 46 2046 2046 HOH HOH . L 8 HOH A 47 2047 2047 HOH HOH . L 8 HOH A 48 2048 2048 HOH HOH . L 8 HOH A 49 2049 2049 HOH HOH . L 8 HOH A 50 2050 2050 HOH HOH . L 8 HOH A 51 2051 2051 HOH HOH . L 8 HOH A 52 2052 2052 HOH HOH . L 8 HOH A 53 2053 2053 HOH HOH . L 8 HOH A 54 2054 2054 HOH HOH . L 8 HOH A 55 2055 2055 HOH HOH . L 8 HOH A 56 2056 2056 HOH HOH . L 8 HOH A 57 2057 2057 HOH HOH . L 8 HOH A 58 2058 2058 HOH HOH . L 8 HOH A 59 2059 2059 HOH HOH . L 8 HOH A 60 2060 2060 HOH HOH . L 8 HOH A 61 2061 2061 HOH HOH . L 8 HOH A 62 2062 2062 HOH HOH . L 8 HOH A 63 2063 2063 HOH HOH . L 8 HOH A 64 2064 2064 HOH HOH . L 8 HOH A 65 2065 2065 HOH HOH . L 8 HOH A 66 2066 2066 HOH HOH . L 8 HOH A 67 2067 2067 HOH HOH . L 8 HOH A 68 2068 2068 HOH HOH . L 8 HOH A 69 2069 2069 HOH HOH . L 8 HOH A 70 2070 2070 HOH HOH . L 8 HOH A 71 2071 2071 HOH HOH . L 8 HOH A 72 2072 2072 HOH HOH . L 8 HOH A 73 2073 2073 HOH HOH . L 8 HOH A 74 2074 2074 HOH HOH . L 8 HOH A 75 2075 2075 HOH HOH . L 8 HOH A 76 2076 2076 HOH HOH . L 8 HOH A 77 2077 2077 HOH HOH . L 8 HOH A 78 2078 2078 HOH HOH . L 8 HOH A 79 2079 2079 HOH HOH . L 8 HOH A 80 2080 2080 HOH HOH . L 8 HOH A 81 2081 2081 HOH HOH . L 8 HOH A 82 2082 2082 HOH HOH . L 8 HOH A 83 2083 2083 HOH HOH . L 8 HOH A 84 2084 2084 HOH HOH . L 8 HOH A 85 2085 2085 HOH HOH . L 8 HOH A 86 2086 2086 HOH HOH . L 8 HOH A 87 2087 2087 HOH HOH . L 8 HOH A 88 2088 2088 HOH HOH . L 8 HOH A 89 2089 2089 HOH HOH . L 8 HOH A 90 2090 2090 HOH HOH . L 8 HOH A 91 2091 2091 HOH HOH . L 8 HOH A 92 2092 2092 HOH HOH . L 8 HOH A 93 2093 2093 HOH HOH . L 8 HOH A 94 2094 2094 HOH HOH . L 8 HOH A 95 2095 2095 HOH HOH . L 8 HOH A 96 2096 2096 HOH HOH . L 8 HOH A 97 2097 2097 HOH HOH . L 8 HOH A 98 2098 2098 HOH HOH . L 8 HOH A 99 2099 2099 HOH HOH . L 8 HOH A 100 2100 2100 HOH HOH . L 8 HOH A 101 2101 2101 HOH HOH . L 8 HOH A 102 2102 2102 HOH HOH . L 8 HOH A 103 2103 2103 HOH HOH . L 8 HOH A 104 2104 2104 HOH HOH . L 8 HOH A 105 2105 2105 HOH HOH . L 8 HOH A 106 2106 2106 HOH HOH . L 8 HOH A 107 2107 2107 HOH HOH . L 8 HOH A 108 2108 2108 HOH HOH . L 8 HOH A 109 2109 2109 HOH HOH . L 8 HOH A 110 2110 2110 HOH HOH . L 8 HOH A 111 2111 2111 HOH HOH . L 8 HOH A 112 2112 2112 HOH HOH . L 8 HOH A 113 2113 2113 HOH HOH . L 8 HOH A 114 2114 2114 HOH HOH . L 8 HOH A 115 2115 2115 HOH HOH . L 8 HOH A 116 2116 2116 HOH HOH . L 8 HOH A 117 2117 2117 HOH HOH . L 8 HOH A 118 2118 2118 HOH HOH . L 8 HOH A 119 2119 2119 HOH HOH . L 8 HOH A 120 2120 2120 HOH HOH . L 8 HOH A 121 2121 2121 HOH HOH . M 8 HOH P 1 2001 2001 HOH HOH . M 8 HOH P 2 2002 2002 HOH HOH . M 8 HOH P 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE4 . . . J 6 17.08 -21.667 -57.587 1 61.08 ? O1 PE4 1631 A 1 HETATM 2 C C1 PE4 . . . J 6 16.934 -21.968 -56.195 1 61.39 ? C1 PE4 1631 A 1 HETATM 3 C C2 PE4 . . . J 6 16.708 -20.669 -55.417 1 61.48 ? C2 PE4 1631 A 1 HETATM 4 O O2 PE4 . . . J 6 16.658 -20.932 -54.007 1 61.3 ? O2 PE4 1631 A 1 HETATM 5 C C3 PE4 . . . J 6 17.491 -19.994 -53.312 1 61.07 ? C3 PE4 1631 A 1 HETATM 6 C C4 PE4 . . . J 6 16.644 -19.122 -52.377 1 60.58 ? C4 PE4 1631 A 1 HETATM 7 O O3 PE4 . . . J 6 17.282 -19.023 -51.098 1 60.25 ? O3 PE4 1631 A 1 HETATM 8 C C5 PE4 . . . J 6 16.468 -18.253 -50.208 1 59.96 ? C5 PE4 1631 A 1 HETATM 9 C C6 PE4 . . . J 6 17.035 -18.265 -48.787 1 59.81 ? C6 PE4 1631 A 1 HETATM 10 O O4 PE4 . . . J 6 17.625 -19.53 -48.476 1 60.05 ? O4 PE4 1631 A 1 HETATM 11 C C7 PE4 . . . J 6 18.646 -19.342 -47.488 1 60.18 ? C7 PE4 1631 A 1 HETATM 12 C C8 PE4 . . . J 6 19.651 -20.499 -47.523 1 60.29 ? C8 PE4 1631 A 1 HETATM 13 O O5 PE4 . . . J 6 20.252 -20.596 -48.824 1 60.27 ? O5 PE4 1631 A 1 HETATM 14 C C9 PE4 . . . J 6 21.676 -20.709 -48.711 1 60.18 ? C9 PE4 1631 A 1 HETATM 15 C C10 PE4 . . . J 6 22.13 -22.131 -49.062 1 60.13 ? C10 PE4 1631 A 1 HETATM 16 O O6 PE4 . . . J 6 21.708 -22.455 -50.388 1 60.13 ? O6 PE4 1631 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #