data_4APN
#
_model_server_result.job_id            yt_rSsGe4GQgY93Vf5p-HQ 
_model_server_result.datetime_utc      '2024-11-17 04:51:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4apn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1489}' 
#
_entry.id    4APN 
#
_exptl.entry_id    4APN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4APN 
_cell.length_a            102.561 
_cell.length_b            102.561 
_cell.length_c            191.985 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4APN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4APN 
_atom_sites.fract_transf_matrix[1][1]    0.00975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1489 1489 FAD FAD . 
D 3 NDP A 1 1490 1490 NDP NDP . 
E 2 FAD B 1 1489 1489 FAD FAD . 
F 3 NDP B 1 1490 1490 NDP NDP . 
G 4 JV0 B 1 1491 1491 JV0 JV0 . 
H 4 JV0 B 1 1492 1492 JV0 JV0 . 
I 4 JV0 B 1 1493 1493 JV0 JV0 . 
J 4 JV0 B 1 1494 1494 JV0 JV0 . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH B 1 2001 2001 HOH HOH . 
L 5 HOH B 2 2002 2002 HOH HOH . 
L 5 HOH B 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 -19.963 -5.147 7.668 1 58.03 ? PA FAD 1489 A 1 
HETATM 2 O O1A FAD . . . C 2 -18.863 -4.545 6.833 1 58.1 ? O1A FAD 1489 A 1 
HETATM 3 O O2A FAD . . . C 2 -20.896 -4.075 8.183 1 57.9 ? O2A FAD 1489 A 1 
HETATM 4 O O5B FAD . . . C 2 -19.311 -5.996 8.872 1 58.43 ? O5B FAD 1489 A 1 
HETATM 5 C C5B FAD . . . C 2 -18.141 -6.756 8.658 1 59.2 ? C5B FAD 1489 A 1 
HETATM 6 C C4B FAD . . . C 2 -17.219 -6.672 9.866 1 59.85 ? C4B FAD 1489 A 1 
HETATM 7 O O4B FAD . . . C 2 -16.656 -7.94 10.138 1 60.02 ? O4B FAD 1489 A 1 
HETATM 8 C C3B FAD . . . C 2 -16.06 -5.719 9.611 1 60.27 ? C3B FAD 1489 A 1 
HETATM 9 O O3B FAD . . . C 2 -16.14 -4.611 10.479 1 60.52 ? O3B FAD 1489 A 1 
HETATM 10 C C2B FAD . . . C 2 -14.806 -6.525 9.885 1 60.47 ? C2B FAD 1489 A 1 
HETATM 11 O O2B FAD . . . C 2 -13.911 -5.835 10.727 1 60.61 ? O2B FAD 1489 A 1 
HETATM 12 C C1B FAD . . . C 2 -15.318 -7.786 10.562 1 60.77 ? C1B FAD 1489 A 1 
HETATM 13 N N9A FAD . . . C 2 -14.493 -8.963 10.218 1 61.61 ? N9A FAD 1489 A 1 
HETATM 14 C C8A FAD . . . C 2 -13.976 -9.28 8.988 1 62.02 ? C8A FAD 1489 A 1 
HETATM 15 N N7A FAD . . . C 2 -13.274 -10.431 9.093 1 62.35 ? N7A FAD 1489 A 1 
HETATM 16 C C5A FAD . . . C 2 -13.328 -10.859 10.372 1 62.31 ? C5A FAD 1489 A 1 
HETATM 17 C C6A FAD . . . C 2 -12.788 -11.973 11.012 1 62.44 ? C6A FAD 1489 A 1 
HETATM 18 N N6A FAD . . . C 2 -11.825 -12.682 10.427 1 62.19 ? N6A FAD 1489 A 1 
HETATM 19 N N1A FAD . . . C 2 -13.028 -12.146 12.361 1 62.54 ? N1A FAD 1489 A 1 
HETATM 20 C C2A FAD . . . C 2 -13.788 -11.229 13.064 1 62.36 ? C2A FAD 1489 A 1 
HETATM 21 N N3A FAD . . . C 2 -14.318 -10.128 12.419 1 62.14 ? N3A FAD 1489 A 1 
HETATM 22 C C4A FAD . . . C 2 -14.094 -9.944 11.092 1 62.06 ? C4A FAD 1489 A 1 
HETATM 23 N N1 FAD . . . C 2 -25.093 0.368 1.842 1 54.8 ? N1 FAD 1489 A 1 
HETATM 24 C C2 FAD . . . C 2 -26.231 1.149 1.941 1 55.01 ? C2 FAD 1489 A 1 
HETATM 25 O O2 FAD . . . C 2 -27.321 0.636 2.197 1 55.43 ? O2 FAD 1489 A 1 
HETATM 26 N N3 FAD . . . C 2 -26.151 2.514 1.754 1 54.9 ? N3 FAD 1489 A 1 
HETATM 27 C C4 FAD . . . C 2 -24.939 3.107 1.47 1 54.89 ? C4 FAD 1489 A 1 
HETATM 28 O O4 FAD . . . C 2 -24.882 4.326 1.306 1 55.05 ? O4 FAD 1489 A 1 
HETATM 29 C C4X FAD . . . C 2 -23.792 2.325 1.368 1 54.86 ? C4X FAD 1489 A 1 
HETATM 30 N N5 FAD . . . C 2 -22.58 2.92 1.087 1 54.81 ? N5 FAD 1489 A 1 
HETATM 31 C C5X FAD . . . C 2 -21.437 2.16 0.985 1 54.74 ? C5X FAD 1489 A 1 
HETATM 32 C C6 FAD . . . C 2 -20.23 2.788 0.693 1 54.82 ? C6 FAD 1489 A 1 
HETATM 33 C C7 FAD . . . C 2 -19.061 2.042 0.586 1 54.77 ? C7 FAD 1489 A 1 
HETATM 34 C C7M FAD . . . C 2 -17.774 2.752 0.274 1 54.89 ? C7M FAD 1489 A 1 
HETATM 35 C C8 FAD . . . C 2 -19.111 0.657 0.768 1 54.79 ? C8 FAD 1489 A 1 
HETATM 36 C C8M FAD . . . C 2 -17.875 -0.186 0.659 1 54.91 ? C8M FAD 1489 A 1 
HETATM 37 C C9 FAD . . . C 2 -20.324 0.033 1.056 1 54.91 ? C9 FAD 1489 A 1 
HETATM 38 C C9A FAD . . . C 2 -21.498 0.779 1.166 1 54.92 ? C9A FAD 1489 A 1 
HETATM 39 N N10 FAD . . . C 2 -22.716 0.17 1.456 1 55.28 ? N10 FAD 1489 A 1 
HETATM 40 C C10 FAD . . . C 2 -23.867 0.944 1.555 1 54.94 ? C10 FAD 1489 A 1 
HETATM 41 C C1' FAD . . . C 2 -22.788 -1.323 1.66 1 55.89 ? C1' FAD 1489 A 1 
HETATM 42 C C2' FAD . . . C 2 -22.913 -1.655 3.148 1 56.67 ? C2' FAD 1489 A 1 
HETATM 43 O O2' FAD . . . C 2 -21.968 -0.906 3.883 1 56.6 ? O2' FAD 1489 A 1 
HETATM 44 C C3' FAD . . . C 2 -22.722 -3.147 3.427 1 57.4 ? C3' FAD 1489 A 1 
HETATM 45 O O3' FAD . . . C 2 -23.609 -3.893 2.622 1 57.84 ? O3' FAD 1489 A 1 
HETATM 46 C C4' FAD . . . C 2 -22.969 -3.504 4.894 1 57.96 ? C4' FAD 1489 A 1 
HETATM 47 O O4' FAD . . . C 2 -21.954 -2.94 5.701 1 58.58 ? O4' FAD 1489 A 1 
HETATM 48 C C5' FAD . . . C 2 -23.002 -5.019 5.089 1 58.09 ? C5' FAD 1489 A 1 
HETATM 49 O O5' FAD . . . C 2 -23.108 -5.368 6.452 1 57.94 ? O5' FAD 1489 A 1 
HETATM 50 P P FAD . . . C 2 -22.283 -6.62 7.037 1 57.8 ? P FAD 1489 A 1 
HETATM 51 O O1P FAD . . . C 2 -22.552 -6.724 8.52 1 58.31 ? O1P FAD 1489 A 1 
HETATM 52 O O2P FAD . . . C 2 -22.616 -7.911 6.327 1 57.45 ? O2P FAD 1489 A 1 
HETATM 53 O O3P FAD . . . C 2 -20.738 -6.242 6.776 1 57.96 ? O3P FAD 1489 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           53 
#