data_4APN
#
_model_server_result.job_id            PeJ3eWXxL1WpUJujFqmdRw 
_model_server_result.datetime_utc      '2025-06-28 00:50:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4apn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1489}' 
#
_entry.id    4APN 
#
_exptl.entry_id    4APN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4APN 
_cell.length_a            102.561 
_cell.length_b            102.561 
_cell.length_c            191.985 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4APN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4APN 
_atom_sites.fract_transf_matrix[1][1]    0.00975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1489 1489 FAD FAD . 
D 3 NDP A 1 1490 1490 NDP NDP . 
E 2 FAD B 1 1489 1489 FAD FAD . 
F 3 NDP B 1 1490 1490 NDP NDP . 
G 4 JV0 B 1 1491 1491 JV0 JV0 . 
H 4 JV0 B 1 1492 1492 JV0 JV0 . 
I 4 JV0 B 1 1493 1493 JV0 JV0 . 
J 4 JV0 B 1 1494 1494 JV0 JV0 . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH B 1 2001 2001 HOH HOH . 
L 5 HOH B 2 2002 2002 HOH HOH . 
L 5 HOH B 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 2 -56.428 31.268 -7.775 1 58.27 ? PA FAD 1489 B 1 
HETATM 2 O O1A FAD . . . E 2 -55.827 32.388 -6.968 1 58.43 ? O1A FAD 1489 B 1 
HETATM 3 O O2A FAD . . . E 2 -55.349 30.346 -8.294 1 58.14 ? O2A FAD 1489 B 1 
HETATM 4 O O5B FAD . . . E 2 -57.311 31.896 -8.968 1 58.53 ? O5B FAD 1489 B 1 
HETATM 5 C C5B FAD . . . E 2 -58.086 33.055 -8.751 1 59.02 ? C5B FAD 1489 B 1 
HETATM 6 C C4B FAD . . . E 2 -57.991 34.005 -9.938 1 59.44 ? C4B FAD 1489 B 1 
HETATM 7 O O4B FAD . . . E 2 -59.255 34.579 -10.213 1 59.58 ? O4B FAD 1489 B 1 
HETATM 8 C C3B FAD . . . E 2 -57.046 35.16 -9.646 1 59.71 ? C3B FAD 1489 B 1 
HETATM 9 O O3B FAD . . . E 2 -55.891 35.054 -10.446 1 59.87 ? O3B FAD 1489 B 1 
HETATM 10 C C2B FAD . . . E 2 -57.829 36.42 -9.972 1 59.84 ? C2B FAD 1489 B 1 
HETATM 11 O O2B FAD . . . E 2 -57.124 37.28 -10.837 1 60.23 ? O2B FAD 1489 B 1 
HETATM 12 C C1B FAD . . . E 2 -59.09 35.914 -10.651 1 59.96 ? C1B FAD 1489 B 1 
HETATM 13 N N9A FAD . . . E 2 -60.253 36.771 -10.333 1 60.31 ? N9A FAD 1489 B 1 
HETATM 14 C C8A FAD . . . E 2 -60.535 37.373 -9.134 1 60.62 ? C8A FAD 1489 B 1 
HETATM 15 N N7A FAD . . . E 2 -61.682 38.078 -9.255 1 60.72 ? N7A FAD 1489 B 1 
HETATM 16 C C5A FAD . . . E 2 -62.142 37.944 -10.515 1 60.63 ? C5A FAD 1489 B 1 
HETATM 17 C C6A FAD . . . E 2 -63.268 38.458 -11.158 1 60.74 ? C6A FAD 1489 B 1 
HETATM 18 N N6A FAD . . . E 2 -63.851 39.553 -10.677 1 60.42 ? N6A FAD 1489 B 1 
HETATM 19 N N1A FAD . . . E 2 -63.477 38.129 -12.483 1 60.88 ? N1A FAD 1489 B 1 
HETATM 20 C C2A FAD . . . E 2 -62.585 37.314 -13.158 1 60.75 ? C2A FAD 1489 B 1 
HETATM 21 N N3A FAD . . . E 2 -61.472 36.816 -12.508 1 60.51 ? N3A FAD 1489 B 1 
HETATM 22 C C4A FAD . . . E 2 -61.252 37.124 -11.206 1 60.47 ? C4A FAD 1489 B 1 
HETATM 23 N N1 FAD . . . E 2 -50.923 26.131 -1.932 1 55.35 ? N1 FAD 1489 B 1 
HETATM 24 C C2 FAD . . . E 2 -50.147 24.987 -2.028 1 55.76 ? C2 FAD 1489 B 1 
HETATM 25 O O2 FAD . . . E 2 -50.661 23.896 -2.281 1 56.19 ? O2 FAD 1489 B 1 
HETATM 26 N N3 FAD . . . E 2 -48.781 25.06 -1.841 1 55.65 ? N3 FAD 1489 B 1 
HETATM 27 C C4 FAD . . . E 2 -48.18 26.27 -1.561 1 55.53 ? C4 FAD 1489 B 1 
HETATM 28 O O4 FAD . . . E 2 -46.96 26.319 -1.397 1 55.69 ? O4 FAD 1489 B 1 
HETATM 29 C C4X FAD . . . E 2 -48.957 27.421 -1.46 1 55.34 ? C4X FAD 1489 B 1 
HETATM 30 N N5 FAD . . . E 2 -48.354 28.629 -1.181 1 55.13 ? N5 FAD 1489 B 1 
HETATM 31 C C5X FAD . . . E 2 -49.105 29.778 -1.08 1 54.93 ? C5X FAD 1489 B 1 
HETATM 32 C C6 FAD . . . E 2 -48.468 30.98 -0.791 1 54.85 ? C6 FAD 1489 B 1 
HETATM 33 C C7 FAD . . . E 2 -49.205 32.153 -0.686 1 54.72 ? C7 FAD 1489 B 1 
HETATM 34 C C7M FAD . . . E 2 -48.485 33.434 -0.377 1 54.75 ? C7M FAD 1489 B 1 
HETATM 35 C C8 FAD . . . E 2 -50.59 32.114 -0.868 1 54.9 ? C8 FAD 1489 B 1 
HETATM 36 C C8M FAD . . . E 2 -51.421 33.358 -0.763 1 55.07 ? C8M FAD 1489 B 1 
HETATM 37 C C9 FAD . . . E 2 -51.224 30.906 -1.153 1 55.07 ? C9 FAD 1489 B 1 
HETATM 38 C C9A FAD . . . E 2 -50.486 29.726 -1.261 1 55.12 ? C9A FAD 1489 B 1 
HETATM 39 N N10 FAD . . . E 2 -51.103 28.513 -1.548 1 55.51 ? N10 FAD 1489 B 1 
HETATM 40 C C10 FAD . . . E 2 -50.339 27.355 -1.646 1 55.33 ? C10 FAD 1489 B 1 
HETATM 41 C C1' FAD . . . E 2 -52.595 28.46 -1.751 1 56.18 ? C1' FAD 1489 B 1 
HETATM 42 C C2' FAD . . . E 2 -52.928 28.394 -3.245 1 56.9 ? C2' FAD 1489 B 1 
HETATM 43 O O2' FAD . . . E 2 -52.254 29.426 -3.933 1 56.58 ? O2' FAD 1489 B 1 
HETATM 44 C C3' FAD . . . E 2 -54.431 28.506 -3.503 1 57.56 ? C3' FAD 1489 B 1 
HETATM 45 O O3' FAD . . . E 2 -55.124 27.559 -2.719 1 58.09 ? O3' FAD 1489 B 1 
HETATM 46 C C4' FAD . . . E 2 -54.78 28.283 -4.974 1 58.06 ? C4' FAD 1489 B 1 
HETATM 47 O O4' FAD . . . E 2 -54.262 29.342 -5.751 1 58.62 ? O4' FAD 1489 B 1 
HETATM 48 C C5' FAD . . . E 2 -56.293 28.197 -5.164 1 58.25 ? C5' FAD 1489 B 1 
HETATM 49 O O5' FAD . . . E 2 -56.635 28.098 -6.527 1 58.2 ? O5' FAD 1489 B 1 
HETATM 50 P P FAD . . . E 2 -57.879 28.931 -7.117 1 58.16 ? P FAD 1489 B 1 
HETATM 51 O O1P FAD . . . E 2 -57.979 28.65 -8.598 1 58.77 ? O1P FAD 1489 B 1 
HETATM 52 O O2P FAD . . . E 2 -59.177 28.607 -6.416 1 57.8 ? O2P FAD 1489 B 1 
HETATM 53 O O3P FAD . . . E 2 -57.491 30.476 -6.857 1 58.3 ? O3P FAD 1489 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#