data_4APN
#
_model_server_result.job_id            yClQWeQzeijz0l7FHj_kbQ 
_model_server_result.datetime_utc      '2024-11-17 04:23:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4apn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1490}' 
#
_entry.id    4APN 
#
_exptl.entry_id    4APN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4APN 
_cell.length_a            102.561 
_cell.length_b            102.561 
_cell.length_c            191.985 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4APN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 390 n n 
PA O2A NDP sing 391 n n 
PA O5B NDP sing 392 n n 
PA O3 NDP sing 393 n n 
O2A HOA2 NDP sing 394 n n 
O5B C5B NDP sing 395 n n 
C5B C4B NDP sing 396 n n 
C5B H51A NDP sing 397 n n 
C5B H52A NDP sing 398 n n 
C4B O4B NDP sing 399 n n 
C4B C3B NDP sing 400 n n 
C4B H4B NDP sing 401 n n 
O4B C1B NDP sing 402 n n 
C3B O3B NDP sing 403 n n 
C3B C2B NDP sing 404 n n 
C3B H3B NDP sing 405 n n 
O3B HO3A NDP sing 406 n n 
C2B O2B NDP sing 407 n n 
C2B C1B NDP sing 408 n n 
C2B H2B NDP sing 409 n n 
O2B P2B NDP sing 410 n n 
C1B N9A NDP sing 411 n n 
C1B H1B NDP sing 412 n n 
N9A C8A NDP sing 413 n y 
N9A C4A NDP sing 414 n y 
C8A N7A NDP doub 415 n y 
C8A H8A NDP sing 416 n n 
N7A C5A NDP sing 417 n y 
C5A C6A NDP sing 418 n y 
C5A C4A NDP doub 419 n y 
C6A N6A NDP sing 420 n n 
C6A N1A NDP doub 421 n y 
N6A H61A NDP sing 422 n n 
N6A H62A NDP sing 423 n n 
N1A C2A NDP sing 424 n y 
C2A N3A NDP doub 425 n y 
C2A H2A NDP sing 426 n n 
N3A C4A NDP sing 427 n y 
O3 PN NDP sing 428 n n 
PN O1N NDP doub 429 n n 
PN O2N NDP sing 430 n n 
PN O5D NDP sing 431 n n 
O2N H21N NDP sing 432 n n 
O5D C5D NDP sing 433 n n 
C5D C4D NDP sing 434 n n 
C5D H51N NDP sing 435 n n 
C5D H52N NDP sing 436 n n 
C4D O4D NDP sing 437 n n 
C4D C3D NDP sing 438 n n 
C4D H4D NDP sing 439 n n 
O4D C1D NDP sing 440 n n 
C3D O3D NDP sing 441 n n 
C3D C2D NDP sing 442 n n 
C3D H3D NDP sing 443 n n 
O3D HO3N NDP sing 444 n n 
C2D O2D NDP sing 445 n n 
C2D C1D NDP sing 446 n n 
C2D H2D NDP sing 447 n n 
O2D HO2N NDP sing 448 n n 
C1D N1N NDP sing 449 n n 
C1D H1D NDP sing 450 n n 
N1N C2N NDP sing 451 n n 
N1N C6N NDP sing 452 n n 
C2N C3N NDP doub 453 n n 
C2N H2N NDP sing 454 n n 
C3N C7N NDP sing 455 n n 
C3N C4N NDP sing 456 n n 
C7N O7N NDP doub 457 n n 
C7N N7N NDP sing 458 n n 
N7N H71N NDP sing 459 n n 
N7N H72N NDP sing 460 n n 
C4N C5N NDP sing 461 n n 
C4N H41N NDP sing 462 n n 
C4N H42N NDP sing 463 n n 
C5N C6N NDP doub 464 n n 
C5N H5N NDP sing 465 n n 
C6N H6N NDP sing 466 n n 
P2B O1X NDP doub 467 n n 
P2B O2X NDP sing 468 n n 
P2B O3X NDP sing 469 n n 
O2X HOP2 NDP sing 470 n n 
O3X HOP3 NDP sing 471 n n 
#
_atom_sites.entry_id                     4APN 
_atom_sites.fract_transf_matrix[1][1]    0.00975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1489 1489 FAD FAD . 
D 3 NDP A 1 1490 1490 NDP NDP . 
E 2 FAD B 1 1489 1489 FAD FAD . 
F 3 NDP B 1 1490 1490 NDP NDP . 
G 4 JV0 B 1 1491 1491 JV0 JV0 . 
H 4 JV0 B 1 1492 1492 JV0 JV0 . 
I 4 JV0 B 1 1493 1493 JV0 JV0 . 
J 4 JV0 B 1 1494 1494 JV0 JV0 . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH B 1 2001 2001 HOH HOH . 
L 5 HOH B 2 2002 2002 HOH HOH . 
L 5 HOH B 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 3 -20.331 -3.151 -7.873 1 68.68 ? PA NDP 1490 A 1 
HETATM 2 O O1A NDP . . . D 3 -19.605 -4.485 -8.525 1 68.7 ? O1A NDP 1490 A 1 
HETATM 3 O O2A NDP . . . D 3 -21.735 -2.887 -8.328 1 68.1 ? O2A NDP 1490 A 1 
HETATM 4 O O5B NDP . . . D 3 -19.945 -2.499 -9.325 1 67.85 ? O5B NDP 1490 A 1 
HETATM 5 C C5B NDP . . . D 3 -18.655 -2.692 -9.951 1 66.83 ? C5B NDP 1490 A 1 
HETATM 6 C C4B NDP . . . D 3 -18.477 -1.876 -11.246 1 66.16 ? C4B NDP 1490 A 1 
HETATM 7 O O4B NDP . . . D 3 -17.112 -2.113 -11.7 1 66.12 ? O4B NDP 1490 A 1 
HETATM 8 C C3B NDP . . . D 3 -19.405 -2.332 -12.377 1 65.93 ? C3B NDP 1490 A 1 
HETATM 9 O O3B NDP . . . D 3 -19.772 -1.207 -13.186 1 65.59 ? O3B NDP 1490 A 1 
HETATM 10 C C2B NDP . . . D 3 -18.546 -3.307 -13.176 1 65.71 ? C2B NDP 1490 A 1 
HETATM 11 O O2B NDP . . . D 3 -18.875 -3.244 -14.559 1 65.69 ? O2B NDP 1490 A 1 
HETATM 12 C C1B NDP . . . D 3 -17.135 -2.759 -13.003 1 65.52 ? C1B NDP 1490 A 1 
HETATM 13 N N9A NDP . . . D 3 -16.14 -3.868 -13.061 1 64.89 ? N9A NDP 1490 A 1 
HETATM 14 C C8A NDP . . . D 3 -16.286 -5.091 -12.545 1 64.67 ? C8A NDP 1490 A 1 
HETATM 15 N N7A NDP . . . D 3 -15.194 -5.811 -12.792 1 64.72 ? N7A NDP 1490 A 1 
HETATM 16 C C5A NDP . . . D 3 -14.345 -5.048 -13.47 1 64.59 ? C5A NDP 1490 A 1 
HETATM 17 C C6A NDP . . . D 3 -13.071 -5.252 -13.99 1 64.32 ? C6A NDP 1490 A 1 
HETATM 18 N N6A NDP . . . D 3 -12.467 -6.424 -13.84 1 64.13 ? N6A NDP 1490 A 1 
HETATM 19 N N1A NDP . . . D 3 -12.46 -4.25 -14.645 1 64.31 ? N1A NDP 1490 A 1 
HETATM 20 C C2A NDP . . . D 3 -13.064 -3.076 -14.793 1 64.71 ? C2A NDP 1490 A 1 
HETATM 21 N N3A NDP . . . D 3 -14.281 -2.847 -14.307 1 64.84 ? N3A NDP 1490 A 1 
HETATM 22 C C4A NDP . . . D 3 -14.945 -3.811 -13.642 1 64.76 ? C4A NDP 1490 A 1 
HETATM 23 O O3 NDP . . . D 3 -19.242 -1.948 -7.4 1 69.6 ? O3 NDP 1490 A 1 
HETATM 24 P PN NDP . . . D 3 -19.343 -1.118 -5.982 1 70.07 ? PN NDP 1490 A 1 
HETATM 25 O O1N NDP . . . D 3 -20.769 -0.708 -6.727 1 70.44 ? O1N NDP 1490 A 1 
HETATM 26 O O2N NDP . . . D 3 -18.08 -0.419 -6.431 1 69.97 ? O2N NDP 1490 A 1 
HETATM 27 O O5D NDP . . . D 3 -19.322 -2.636 -5.35 1 69.43 ? O5D NDP 1490 A 1 
HETATM 28 C C5D NDP . . . D 3 -19.716 -2.733 -3.969 1 68.39 ? C5D NDP 1490 A 1 
HETATM 29 C C4D NDP . . . D 3 -21.165 -3.235 -3.699 1 67.7 ? C4D NDP 1490 A 1 
HETATM 30 O O4D NDP . . . D 3 -21.535 -2.591 -2.446 1 67.17 ? O4D NDP 1490 A 1 
HETATM 31 C C3D NDP . . . D 3 -22.266 -2.894 -4.713 1 67.54 ? C3D NDP 1490 A 1 
HETATM 32 O O3D NDP . . . D 3 -22.565 -4.052 -5.502 1 67.98 ? O3D NDP 1490 A 1 
HETATM 33 C C2D NDP . . . D 3 -23.483 -2.542 -3.865 1 67.25 ? C2D NDP 1490 A 1 
HETATM 34 O O2D NDP . . . D 3 -24.322 -3.697 -3.684 1 66.95 ? O2D NDP 1490 A 1 
HETATM 35 C C1D NDP . . . D 3 -22.897 -2.077 -2.523 1 66.92 ? C1D NDP 1490 A 1 
HETATM 36 N N1N NDP . . . D 3 -22.881 -0.59 -2.4 1 66.5 ? N1N NDP 1490 A 1 
HETATM 37 C C2N NDP . . . D 3 -24.068 0.12 -2.158 1 66.17 ? C2N NDP 1490 A 1 
HETATM 38 C C3N NDP . . . D 3 -24.048 1.511 -2.044 1 65.93 ? C3N NDP 1490 A 1 
HETATM 39 C C7N NDP . . . D 3 -25.352 2.285 -1.794 1 66 ? C7N NDP 1490 A 1 
HETATM 40 O O7N NDP . . . D 3 -25.35 3.512 -1.694 1 65.89 ? O7N NDP 1490 A 1 
HETATM 41 N N7N NDP . . . D 3 -26.451 1.539 -1.692 1 66.03 ? N7N NDP 1490 A 1 
HETATM 42 C C4N NDP . . . D 3 -22.738 2.307 -2.18 1 65.74 ? C4N NDP 1490 A 1 
HETATM 43 C C5N NDP . . . D 3 -21.62 1.504 -2.401 1 65.95 ? C5N NDP 1490 A 1 
HETATM 44 C C6N NDP . . . D 3 -21.673 0.116 -2.514 1 66.26 ? C6N NDP 1490 A 1 
HETATM 45 P P2B NDP . . . D 3 -19.839 -4.331 -15.231 1 65.41 ? P2B NDP 1490 A 1 
HETATM 46 O O1X NDP . . . D 3 -21.303 -3.66 -15.198 1 65.6 ? O1X NDP 1490 A 1 
HETATM 47 O O2X NDP . . . D 3 -19.391 -4.344 -16.786 1 65.74 ? O2X NDP 1490 A 1 
HETATM 48 O O3X NDP . . . D 3 -19.795 -5.662 -14.589 1 65.47 ? O3X NDP 1490 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           381 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#