data_4APU # _model_server_result.job_id STT9HCXuFO7MBm75dwFgrQ _model_server_result.datetime_utc '2025-02-09 01:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4apu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1933}' # _entry.id 4APU # _exptl.entry_id 4APU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.674 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8S,11R,13S,14S,16S,17S)-17-cyclopropylcarbonyl-16-ethenyl-13-methyl-11-(4-pyridin-3-ylphenyl)-2,6,7,8,11,12,14,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.33 _cell.angle_gamma 90 _cell.entry_id 4APU _cell.length_a 57.662 _cell.length_b 64.374 _cell.length_c 70.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4APU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H37 N O2' _chem_comp.formula_weight 503.674 _chem_comp.id A2K _chem_comp.mon_nstd_flag . _chem_comp.name (8S,11R,13S,14S,16S,17S)-17-cyclopropylcarbonyl-16-ethenyl-13-methyl-11-(4-pyridin-3-ylphenyl)-2,6,7,8,11,12,14,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O33 C1 A2K doub 1 n n C1 C4 A2K sing 2 n n C1 C3 A2K sing 3 n n C4 C20 A2K doub 4 n n C20 C6 A2K sing 5 n n C20 C19 A2K sing 6 n n C6 C7 A2K sing 7 n n C19 C5 A2K sing 8 n n C19 C8 A2K doub 9 n n C5 C3 A2K sing 10 n n C8 C11 A2K sing 11 n n C8 C9 A2K sing 12 n n C11 C10 A2K sing 13 n n C11 C21 A2K sing 14 n n C10 C12 A2K sing 15 n n C12 C16 A2K sing 16 n n C12 C13 A2K sing 17 n n C12 C15 A2K sing 18 n n C13 C14 A2K sing 19 n n C13 C9 A2K sing 20 n n C14 C2 A2K sing 21 n n C9 C7 A2K sing 22 n n C15 C22 A2K sing 23 n n C15 C2 A2K sing 24 n n C22 O24 A2K doub 25 n n C22 C23 A2K sing 26 n n C23 C31 A2K sing 27 n n C23 C30 A2K sing 28 n n C31 C30 A2K sing 29 n n C2 C39 A2K sing 30 n n C39 C40 A2K doub 31 n n C21 C29 A2K sing 32 n y C21 C25 A2K doub 33 n y C29 C28 A2K doub 34 n y C28 C27 A2K sing 35 n y C27 C26 A2K doub 36 n y C27 C32 A2K sing 37 n n C26 C25 A2K sing 38 n y C32 C38 A2K sing 39 n y C32 C34 A2K doub 40 n y C38 N37 A2K doub 41 n y N37 C36 A2K sing 42 n y C36 C35 A2K doub 43 n y C35 C34 A2K sing 44 n y C4 H4 A2K sing 45 n n C3 H31C A2K sing 46 n n C3 H32C A2K sing 47 n n C6 H61C A2K sing 48 n n C6 H62C A2K sing 49 n n C7 H71C A2K sing 50 n n C7 H72C A2K sing 51 n n C5 H51C A2K sing 52 n n C5 H52C A2K sing 53 n n C11 H11 A2K sing 54 n n C9 H9 A2K sing 55 n n C10 H101 A2K sing 56 n n C10 H102 A2K sing 57 n n C16 H161 A2K sing 58 n n C16 H162 A2K sing 59 n n C16 H163 A2K sing 60 n n C13 H13 A2K sing 61 n n C15 H15 A2K sing 62 n n C14 H141 A2K sing 63 n n C14 H142 A2K sing 64 n n C2 H2 A2K sing 65 n n C23 H23 A2K sing 66 n n C31 H311 A2K sing 67 n n C31 H312 A2K sing 68 n n C30 H301 A2K sing 69 n n C30 H302 A2K sing 70 n n C39 H39 A2K sing 71 n n C40 H401 A2K sing 72 n n C40 H402 A2K sing 73 n n C29 H29 A2K sing 74 n n C25 H25 A2K sing 75 n n C28 H28 A2K sing 76 n n C26 H26 A2K sing 77 n n C38 H38 A2K sing 78 n n C34 H34 A2K sing 79 n n C36 H36 A2K sing 80 n n C35 H35 A2K sing 81 n n # _atom_sites.entry_id 4APU _atom_sites.fract_transf_matrix[1][1] 0.017342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001924 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OR8 A 1 1933 1933 OR8 OR8 . D 3 SO4 A 1 1934 1934 SO4 SO4 . E 4 A2K B 1 1933 1933 A2K A2K . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . G 5 HOH B 14 2014 2014 HOH HOH . G 5 HOH B 15 2015 2015 HOH HOH . G 5 HOH B 16 2016 2016 HOH HOH . G 5 HOH B 17 2017 2017 HOH HOH . G 5 HOH B 18 2018 2018 HOH HOH . G 5 HOH B 19 2019 2019 HOH HOH . G 5 HOH B 20 2020 2020 HOH HOH . G 5 HOH B 21 2021 2021 HOH HOH . G 5 HOH B 22 2022 2022 HOH HOH . G 5 HOH B 23 2023 2023 HOH HOH . G 5 HOH B 24 2024 2024 HOH HOH . G 5 HOH B 25 2025 2025 HOH HOH . G 5 HOH B 26 2026 2026 HOH HOH . G 5 HOH B 27 2027 2027 HOH HOH . G 5 HOH B 28 2028 2028 HOH HOH . G 5 HOH B 29 2029 2029 HOH HOH . G 5 HOH B 30 2030 2030 HOH HOH . G 5 HOH B 31 2031 2031 HOH HOH . G 5 HOH B 32 2032 2032 HOH HOH . G 5 HOH B 33 2033 2033 HOH HOH . G 5 HOH B 34 2034 2034 HOH HOH . G 5 HOH B 35 2035 2035 HOH HOH . G 5 HOH B 36 2036 2036 HOH HOH . G 5 HOH B 37 2037 2037 HOH HOH . G 5 HOH B 38 2038 2038 HOH HOH . G 5 HOH B 39 2039 2039 HOH HOH . G 5 HOH B 40 2040 2040 HOH HOH . G 5 HOH B 41 2041 2041 HOH HOH . G 5 HOH B 42 2042 2042 HOH HOH . G 5 HOH B 43 2043 2043 HOH HOH . G 5 HOH B 44 2044 2044 HOH HOH . G 5 HOH B 45 2045 2045 HOH HOH . G 5 HOH B 46 2046 2046 HOH HOH . G 5 HOH B 47 2047 2047 HOH HOH . G 5 HOH B 48 2048 2048 HOH HOH . G 5 HOH B 49 2049 2049 HOH HOH . G 5 HOH B 50 2050 2050 HOH HOH . G 5 HOH B 51 2051 2051 HOH HOH . G 5 HOH B 52 2052 2052 HOH HOH . G 5 HOH B 53 2053 2053 HOH HOH . G 5 HOH B 54 2054 2054 HOH HOH . G 5 HOH B 55 2055 2055 HOH HOH . G 5 HOH B 56 2056 2056 HOH HOH . G 5 HOH B 57 2057 2057 HOH HOH . G 5 HOH B 58 2058 2058 HOH HOH . G 5 HOH B 59 2059 2059 HOH HOH . G 5 HOH B 60 2060 2060 HOH HOH . G 5 HOH B 61 2061 2061 HOH HOH . G 5 HOH B 62 2062 2062 HOH HOH . G 5 HOH B 63 2063 2063 HOH HOH . G 5 HOH B 64 2064 2064 HOH HOH . G 5 HOH B 65 2065 2065 HOH HOH . G 5 HOH B 66 2066 2066 HOH HOH . G 5 HOH B 67 2067 2067 HOH HOH . G 5 HOH B 68 2068 2068 HOH HOH . G 5 HOH B 69 2069 2069 HOH HOH . G 5 HOH B 70 2070 2070 HOH HOH . G 5 HOH B 71 2071 2071 HOH HOH . G 5 HOH B 72 2072 2072 HOH HOH . G 5 HOH B 73 2073 2073 HOH HOH . G 5 HOH B 74 2074 2074 HOH HOH . G 5 HOH B 75 2075 2075 HOH HOH . G 5 HOH B 76 2076 2076 HOH HOH . G 5 HOH B 77 2077 2077 HOH HOH . G 5 HOH B 78 2078 2078 HOH HOH . G 5 HOH B 79 2079 2079 HOH HOH . G 5 HOH B 80 2080 2080 HOH HOH . G 5 HOH B 81 2081 2081 HOH HOH . G 5 HOH B 82 2082 2082 HOH HOH . G 5 HOH B 83 2083 2083 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O33 A2K . . . E 4 9.508 8.206 37.692 1 42.53 ? O33 A2K 1933 B 1 HETATM 2 C C1 A2K . . . E 4 8.974 7.545 38.586 1 38.89 ? C1 A2K 1933 B 1 HETATM 3 C C4 A2K . . . E 4 9.802 6.781 39.517 1 36.04 ? C4 A2K 1933 B 1 HETATM 4 C C20 A2K . . . E 4 9.273 6.051 40.501 1 34.82 ? C20 A2K 1933 B 1 HETATM 5 C C6 A2K . . . E 4 10.278 5.318 41.337 1 35.04 ? C6 A2K 1933 B 1 HETATM 6 C C19 A2K . . . E 4 7.942 5.918 40.712 1 35.56 ? C19 A2K 1933 B 1 HETATM 7 C C5 A2K . . . E 4 7.011 6.323 39.577 1 36.41 ? C5 A2K 1933 B 1 HETATM 8 C C3 A2K . . . E 4 7.476 7.522 38.765 1 36.49 ? C3 A2K 1933 B 1 HETATM 9 C C8 A2K . . . E 4 7.454 5.376 41.861 1 35.27 ? C8 A2K 1933 B 1 HETATM 10 C C11 A2K . . . E 4 5.97 5.134 42.147 1 36.48 ? C11 A2K 1933 B 1 HETATM 11 C C10 A2K . . . E 4 5.644 5.639 43.573 1 37.18 ? C10 A2K 1933 B 1 HETATM 12 C C12 A2K . . . E 4 6.565 5.078 44.668 1 37.1 ? C12 A2K 1933 B 1 HETATM 13 C C16 A2K . . . E 4 6.508 3.556 44.851 1 36.41 ? C16 A2K 1933 B 1 HETATM 14 C C13 A2K . . . E 4 7.961 5.509 44.299 1 36.66 ? C13 A2K 1933 B 1 HETATM 15 C C14 A2K . . . E 4 8.789 5.172 45.531 1 38.19 ? C14 A2K 1933 B 1 HETATM 16 C C9 A2K . . . E 4 8.426 4.958 42.96 1 35.86 ? C9 A2K 1933 B 1 HETATM 17 C C7 A2K . . . E 4 9.851 5.476 42.759 1 36.4 ? C7 A2K 1933 B 1 HETATM 18 C C15 A2K . . . E 4 6.443 5.717 46.04 1 38.11 ? C15 A2K 1933 B 1 HETATM 19 C C22 A2K . . . E 4 5.343 5.09 46.847 1 38.45 ? C22 A2K 1933 B 1 HETATM 20 O O24 A2K . . . E 4 5.552 4.243 47.687 1 37.81 ? O24 A2K 1933 B 1 HETATM 21 C C23 A2K . . . E 4 3.947 5.508 46.561 1 38.67 ? C23 A2K 1933 B 1 HETATM 22 C C31 A2K . . . E 4 2.922 4.39 46.716 1 38.25 ? C31 A2K 1933 B 1 HETATM 23 C C30 A2K . . . E 4 2.988 5.519 47.74 1 39.89 ? C30 A2K 1933 B 1 HETATM 24 C C2 A2K . . . E 4 7.829 5.535 46.66 1 38.85 ? C2 A2K 1933 B 1 HETATM 25 C C39 A2K . . . E 4 8.271 6.819 47.33 1 41.66 ? C39 A2K 1933 B 1 HETATM 26 C C40 A2K . . . E 4 8.879 6.758 48.495 1 43.72 ? C40 A2K 1933 B 1 HETATM 27 C C21 A2K . . . E 4 5.609 3.681 42.012 1 38.01 ? C21 A2K 1933 B 1 HETATM 28 C C29 A2K . . . E 4 4.488 3.13 42.653 1 39.01 ? C29 A2K 1933 B 1 HETATM 29 C C28 A2K . . . E 4 4.186 1.768 42.528 1 39.15 ? C28 A2K 1933 B 1 HETATM 30 C C27 A2K . . . E 4 4.965 0.91 41.739 1 35.86 ? C27 A2K 1933 B 1 HETATM 31 C C26 A2K . . . E 4 6.068 1.457 41.084 1 37.43 ? C26 A2K 1933 B 1 HETATM 32 C C25 A2K . . . E 4 6.385 2.812 41.225 1 37.64 ? C25 A2K 1933 B 1 HETATM 33 C C32 A2K . . . E 4 4.672 -0.54 41.645 1 34.31 ? C32 A2K 1933 B 1 HETATM 34 C C38 A2K . . . E 4 5.709 -1.438 41.428 1 33.05 ? C38 A2K 1933 B 1 HETATM 35 N N37 A2K . . . E 4 5.514 -2.75 41.342 1 32.7 ? N37 A2K 1933 B 1 HETATM 36 C C36 A2K . . . E 4 4.312 -3.289 41.487 1 34.77 ? C36 A2K 1933 B 1 HETATM 37 C C35 A2K . . . E 4 3.223 -2.462 41.71 1 34.87 ? C35 A2K 1933 B 1 HETATM 38 C C34 A2K . . . E 4 3.402 -1.075 41.805 1 36.1 ? C34 A2K 1933 B 1 # _model_server_stats.io_time_ms 136 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #