data_4AQQ # _model_server_result.job_id MlCVT-AGSxPlADamUyqqXg _model_server_result.datetime_utc '2025-03-04 14:28:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4AQQ # _exptl.entry_id 4AQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AQQ _cell.length_a 342.701 _cell.length_b 342.701 _cell.length_c 342.701 _cell.Z_PDB 720 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 60-MERIC 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 (1-60) A,B 2 1 A,B 3 (1-5) A,B 4 (1,2,6,10,23,24) A,B 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.046488 -0.682716 0.729204 0.248473 -0.699146 -0.670415 0.967523 0.212354 0.137135 124.94906 -113.78735 23.91369 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.937436 0.101088 -0.33316 -0.347438 0.33316 -0.876522 0.02239 0.937436 0.347438 -56.97303 -149.38771 -111.99302 3 'point symmetry operation' ? ? 0.836204 -0.183874 -0.516675 -0.461079 -0.745809 -0.480807 -0.296933 0.640281 -0.708429 -88.17127 -81.1988 -292.22064 4 'point symmetry operation' ? ? 0.836204 -0.461079 -0.296933 -0.183874 -0.745809 0.640281 -0.516675 -0.480807 -0.708429 -50.47982 110.33197 -291.61441 5 'point symmetry operation' ? ? 0.937436 -0.347438 0.02239 0.101088 0.33316 0.937436 -0.33316 -0.876522 0.347438 4.01302 160.51559 -111.01212 6 'point symmetry operation' ? ? 0.8722 0.410914 0.265362 0.410914 -0.909812 0.058242 0.265362 0.058242 -0.962388 44.92891 11.5015 -334.79609 7 'point symmetry operation' ? ? 0.680805 0.473829 -0.558561 0.702613 -0.206976 0.680805 0.206976 -0.855948 -0.473829 -95.86715 117.48244 -250.83444 8 'point symmetry operation' ? ? 0.461079 -0.296933 -0.836204 0.745809 0.640281 0.183874 0.480807 -0.708429 0.516675 -142.88395 32.12673 -81.69285 9 'point symmetry operation' ? ? 0.516675 -0.836204 -0.183874 0.480807 0.461079 -0.745809 0.708429 0.296933 0.64028 -31.14586 -126.60694 -61.11926 10 'point symmetry operation' ? ? 0.770762 -0.398731 0.496931 0.27383 -0.496931 -0.823454 0.575277 0.770762 -0.273831 84.92887 -139.35404 -217.54566 11 'point symmetry operation' ? ? -0.876522 -0.347438 -0.33316 -0.347438 -0.02239 0.937436 -0.33316 0.937436 -0.101088 -57.89136 160.45307 -188.78541 12 'point symmetry operation' ? ? -0.708429 -0.516675 0.480807 -0.296933 0.836204 0.461079 -0.640281 0.183875 -0.745809 81.26134 78.60623 -298.52451 13 'point symmetry operation' ? ? -0.473829 0.206976 0.855948 -0.558561 0.680805 -0.473829 -0.680805 -0.702613 -0.206976 144.96055 -81.03286 -205.98899 14 'point symmetry operation' ? ? -0.496931 0.823454 0.273831 -0.770762 -0.27383 -0.575277 -0.398731 -0.496931 0.770761 45.17612 -97.8484 -39.05979 15 'point symmetry operation' ? ? -0.745809 0.480807 -0.461078 -0.64028 -0.708429 0.296933 -0.183874 0.516675 0.836204 -80.19326 51.39811 -28.42739 16 'point symmetry operation' ? ? -0.995678 -0.063476 0.067799 -0.063476 -0.067798 -0.995678 0.067799 -0.995678 0.063476 10.27213 -169.26424 -159.12826 17 'point symmetry operation' ? ? -0.909812 -0.058242 0.410915 -0.058242 -0.962388 -0.265362 0.410915 -0.265362 0.8722 68.88852 -44.01062 -21.35779 18 'point symmetry operation' ? ? -0.823454 0.273831 0.496931 0.273831 -0.575277 0.770761 0.496931 0.770761 0.398731 83.40435 132.79527 -102.80728 19 'point symmetry operation' ? ? -0.855948 0.473829 0.206976 0.473829 0.558561 0.680805 0.206976 0.680805 -0.702613 33.75924 116.8137 -290.9163 20 'point symmetry operation' ? ? -0.962388 0.265362 -0.058242 0.265362 0.8722 -0.410914 -0.058242 -0.410914 -0.909812 -11.43896 -69.86934 -325.72458 21 'point symmetry operation' ? ? 0.296933 -0.836204 -0.461079 -0.640281 0.183874 -0.745809 0.708429 0.516675 -0.480807 -78.60622 -127.17447 -252.61138 22 'point symmetry operation' ? ? 0.558561 -0.680805 0.473829 -0.680805 -0.702613 -0.206976 0.473829 -0.206976 -0.855948 81.03285 -34.63891 -316.31059 23 'point symmetry operation' ? ? 0.770762 0.27383 0.575277 -0.398731 -0.496931 0.770762 0.496931 -0.823454 -0.273831 97.84838 132.29026 -216.52612 24 'point symmetry operation' ? ? 0.640281 0.708429 -0.296933 -0.183874 0.516675 0.836204 0.745809 -0.480807 0.461079 -51.39812 142.9226 -91.15672 25 'point symmetry operation' ? ? 0.347438 0.02239 -0.937436 -0.33316 0.937436 -0.101088 0.876522 0.347438 0.33316 -160.45306 -17.43542 -113.45864 26 'point symmetry operation' ? ? -0.206976 0.855948 0.473829 -0.680805 -0.473829 0.558561 0.702613 -0.206977 0.680805 79.48447 95.86713 -53.8676 27 'point symmetry operation' ? ? -0.480807 0.708429 -0.516675 -0.461079 0.296933 0.836204 0.745809 0.64028 0.183874 -89.65714 142.88396 -139.22325 28 'point symmetry operation' ? ? -0.708429 -0.296933 -0.640281 -0.516675 0.836204 0.183875 0.480807 0.461079 -0.745809 -110.23079 31.1459 -297.95693 29 'point symmetry operation' ? ? -0.575277 -0.770762 0.273831 -0.770762 0.398731 -0.496931 0.273831 -0.496931 -0.823454 46.19559 -84.92885 -310.70409 30 'point symmetry operation' ? ? -0.265362 -0.058242 0.962388 -0.8722 -0.410914 -0.265362 0.410914 -0.909812 0.058242 163.44607 -44.92893 -159.84858 31 'point symmetry operation' ? ? 0.183874 -0.516675 -0.836204 0.745809 -0.480807 0.461078 -0.64028 -0.708429 0.296933 -142.9226 80.19327 -119.95186 32 'point symmetry operation' ? ? 0.33316 -0.937436 0.101088 0.876522 0.347438 0.33316 -0.347438 -0.02239 0.937436 17.43544 57.89134 -10.89695 33 'point symmetry operation' ? ? 0.640281 -0.183874 0.745809 0.708429 0.516675 -0.480807 -0.296933 0.836204 0.461079 127.1745 -81.26136 -92.74384 34 'point symmetry operation' ? ? 0.680805 0.702613 0.206976 0.473829 -0.206976 -0.855948 -0.558561 0.680805 -0.473829 34.63892 -144.96054 -252.38292 35 'point symmetry operation' ? ? 0.39873 0.496931 -0.770762 0.496931 -0.823454 -0.273831 -0.770762 -0.273831 -0.575277 -132.29026 -45.17608 -269.19839 36 'point symmetry operation' ? ? -0.273831 0.496931 0.823454 0.575277 0.770762 -0.273831 -0.770762 0.398731 -0.496931 139.35403 -46.1956 -256.27892 37 'point symmetry operation' ? ? -0.410914 0.909812 -0.058242 0.265362 0.058242 -0.962388 -0.8722 -0.410914 -0.265362 -11.50148 -163.44606 -216.27897 38 'point symmetry operation' ? ? -0.702613 0.206976 -0.680805 0.206976 -0.855948 -0.473829 -0.680805 -0.473829 0.558561 -117.48241 -79.48446 -75.48287 39 'point symmetry operation' ? ? -0.745809 -0.64028 -0.183874 0.480807 -0.708429 0.516675 -0.461078 0.296933 0.836204 -32.12672 89.65712 -28.46604 40 'point symmetry operation' ? ? -0.480807 -0.461079 0.745809 0.708429 0.296933 0.64028 -0.516675 0.836204 0.183874 126.60693 110.23077 -140.20415 41 'point symmetry operation' ? ? 0.296933 -0.640281 0.708429 -0.836204 0.183874 0.516675 -0.461079 -0.745809 -0.480807 120.87061 88.17127 -252.54885 42 'point symmetry operation' ? ? 0.516675 0.480807 0.708429 -0.836204 0.461079 0.296933 -0.183874 -0.745809 0.64028 120.26443 50.47979 -61.01808 43 'point symmetry operation' ? ? 0.33316 0.876522 -0.347438 -0.937436 0.347438 -0.02239 0.101088 0.33316 0.937436 -60.33785 -4.01304 -10.83441 44 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 -171.35002 0.00003 -171.34997 45 'point symmetry operation' ? ? -0.02239 -0.937435 -0.347438 -0.937435 -0.101088 0.333161 -0.347438 0.333161 -0.876522 -59.35703 56.97306 -320.73771 46 'point symmetry operation' ? ? 0.183874 0.745809 -0.64028 -0.516675 -0.480807 -0.708429 -0.836204 0.461078 0.296933 -110.33195 -120.26442 -120.87022 47 'point symmetry operation' ? ? -0.101088 -0.33316 -0.937436 -0.33316 -0.876522 0.347438 -0.937436 0.347438 -0.022389 -160.5156 60.33788 -175.363 48 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 -0.00002 171.35002 -171.34997 49 'point symmetry operation' ? ? 0.347438 -0.33316 0.876522 0.02239 0.937436 0.347438 -0.937436 -0.101088 0.33316 149.38771 59.35701 -114.377 50 'point symmetry operation' ? ? 0.461079 0.745809 0.480807 -0.296933 0.640281 -0.708429 -0.836204 0.183874 0.516675 81.19883 -120.87063 -83.1788 51 'point symmetry operation' ? ? -0.273831 0.575277 -0.770762 0.496931 0.770762 0.398731 0.823454 -0.273831 -0.496931 -132.79529 68.54275 -254.75433 52 'point symmetry operation' ? ? -0.473829 -0.558561 -0.680805 0.206976 0.680805 -0.702613 0.855948 -0.473829 -0.206976 -116.81369 -119.56628 -205.10927 53 'point symmetry operation' ? ? -0.265362 -0.8722 0.410914 -0.058242 -0.410914 -0.909812 0.962388 -0.265362 0.058242 69.86936 -154.37455 -159.91112 54 'point symmetry operation' ? ? 0.063476 0.067798 0.995678 0.067798 -0.995678 0.063476 0.995678 0.063476 -0.067799 169.26424 12.22179 -181.62218 55 'point symmetry operation' ? ? 0.058242 0.962388 0.265362 0.410914 -0.265362 0.8722 0.909812 0.058242 -0.410914 44.01059 149.99226 -240.23851 56 'point symmetry operation' ? ? -0.206976 -0.680805 0.702613 0.855948 -0.473829 -0.206977 0.473829 0.558561 0.680805 119.56631 -33.75927 -54.53636 57 'point symmetry operation' ? ? 0.058242 0.410914 0.909812 0.962388 -0.265362 0.058242 0.265362 0.8722 -0.410914 154.37454 11.43895 -241.2194 58 'point symmetry operation' ? ? -0.067798 0.995678 -0.063476 0.995678 0.063476 -0.067798 -0.063476 -0.067798 -0.995678 -12.22181 -10.27211 -340.61426 59 'point symmetry operation' ? ? -0.410914 0.265362 -0.8722 0.909812 0.058242 -0.410914 -0.058242 -0.962388 -0.265362 -149.99225 -68.88849 -215.36061 60 'point symmetry operation' ? ? -0.496931 -0.770762 -0.398731 0.823454 -0.273831 -0.496931 0.273831 -0.575277 0.770762 -68.54272 -83.40436 -38.55475 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 418 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 451 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.955 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4AQQ _atom_sites.fract_transf_matrix[1][1] 0.002918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1001 _pdbx_nonpoly_scheme.pdb_mon_id CA _pdbx_nonpoly_scheme.auth_mon_id CA _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 98.658 _atom_site.Cartn_y -18.382 _atom_site.Cartn_z -195.165 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 54.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 1 #