data_4AR2 # _model_server_result.job_id SbvXPwwSlVj6b8_PORsIyg _model_server_result.datetime_utc '2025-03-04 14:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ar2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 4AR2 # _exptl.entry_id 4AR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AR2 _cell.length_a 346.04 _cell.length_b 348.55 _cell.length_c 372.87 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 120-MERIC 120 'complete icosahedral assembly' 1 ? dimeric 2 'icosahedral asymmetric unit' 2 ? decameric 10 'icosahedral pentamer' 3 ? dodecameric 12 'icosahedral 23 hexamer' 4 ? dimeric 2 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 (1-60) A,B,C 2 1 A,B,C 3 (1-5) A,B,C 4 (1,2,6,10,23,24) A,B,C 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.201079 -0.121061 0.972066 -0.615617 0.787502 -0.029269 -0.76196 -0.604305 -0.232877 36.32706 106.1265 130.24131 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.961593 0.270213 0.048214 -0.13586 0.315932 0.939004 0.238498 -0.90949 0.340509 6.81916 24.78997 -42.65821 3 'point symmetry operation' ? ? 0.899448 0.301353 0.31651 0.050387 -0.790913 0.609851 0.434112 -0.532581 -0.72657 18.01826 -8.36077 -78.10359 4 'point symmetry operation' ? ? 0.899448 0.050387 0.434112 0.301353 -0.790913 -0.532581 0.31651 0.609851 -0.72657 18.12052 -53.63902 -57.35184 5 'point symmetry operation' ? ? 0.961593 -0.13586 0.238498 0.270213 0.315932 -0.90949 0.048214 0.939004 0.340509 6.98462 -48.47179 -9.08116 6 'point symmetry operation' ? ? 0.161167 0.920913 0.354886 0.920913 -0.26963 0.281458 0.354886 0.281458 -0.891536 145.2757 -158.35407 -64.41209 7 'point symmetry operation' ? ? 0.114501 0.01173 0.993354 0.989303 -0.092326 -0.112944 0.090387 0.99566 -0.022176 154.06532 -170.76483 -16.98339 8 'point symmetry operation' ? ? 0.345423 -0.8688 0.354781 0.936913 0.340875 -0.077455 -0.053643 0.359153 0.931736 112.7622 -161.48937 9.26133 9 'point symmetry operation' ? ? 0.534806 -0.503814 -0.678346 0.836144 0.431303 0.338881 0.12184 -0.748431 0.651925 78.44586 -143.34606 -21.94724 10 'point symmetry operation' ? ? 0.42093 0.60229 -0.678281 0.826256 0.05399 0.560701 0.374325 -0.79645 -0.47492 98.5403 -141.40834 -67.47992 11 'point symmetry operation' ? ? -0.242032 -0.969599 0.036037 -0.969599 0.240319 -0.046099 0.036037 -0.046099 -0.998287 213.0866 166.2066 -9.9641 12 'point symmetry operation' ? ? -0.092412 -0.404503 -0.909856 -0.976003 -0.144147 0.163215 -0.197174 0.903105 -0.381475 185.86253 167.51875 31.72396 13 'point symmetry operation' ? ? -0.250906 0.674738 -0.6941 -0.880008 -0.457711 -0.126835 -0.403278 0.578989 0.708617 214.01755 150.32738 69.04042 14 'point symmetry operation' ? ? -0.498481 0.77665 0.385138 -0.814274 -0.26704 -0.51541 -0.297446 -0.57053 0.76552 258.64238 138.39038 50.41519 15 'point symmetry operation' ? ? -0.492997 -0.239606 0.836387 -0.869645 0.164367 -0.465512 -0.025935 -0.956856 -0.289404 258.06702 148.20427 1.58771 16 'point symmetry operation' ? ? -0.919135 0.048686 -0.390924 0.048686 -0.970688 -0.235359 -0.390924 -0.235359 0.889823 329.14389 -9.73865 66.87295 17 'point symmetry operation' ? ? -0.983682 0.122561 -0.131712 0.122561 -0.07946 -0.989275 -0.131712 -0.989275 0.063142 340.75918 -23.43001 20.41438 18 'point symmetry operation' ? ? -0.993966 -0.107292 0.022809 -0.107292 0.907749 -0.405561 0.022809 -0.405561 -0.913783 342.70817 17.63664 -7.70141 19 'point symmetry operation' ? ? -0.935774 -0.323223 -0.140904 -0.323223 0.626649 0.70911 -0.140904 0.70911 -0.690875 332.29743 56.7086 21.38064 20 'point symmetry operation' ? ? -0.889526 -0.226824 -0.396604 -0.226824 -0.534289 0.814301 -0.396604 0.814301 0.423815 323.91424 39.78974 67.47012 21 'point symmetry operation' ? ? 0.746077 -0.404005 -0.529291 0.305914 -0.49807 0.811384 -0.591427 -0.767272 -0.248007 42.46006 -51.76386 98.94958 22 'point symmetry operation' ? ? 0.646075 0.555346 -0.52362 0.555346 -0.81264 -0.176657 -0.52362 -0.176657 -0.833436 60.11102 -96.63708 86.47543 23 'point symmetry operation' ? ? 0.42093 0.826256 0.374325 0.60229 0.05399 -0.79645 -0.678281 0.560701 -0.47492 100.6204 -105.45954 114.07835 24 'point symmetry operation' ? ? 0.381784 0.034336 0.923614 0.38187 0.904166 -0.191463 -0.841675 0.425798 0.332084 108.00561 -66.0389 143.61203 25 'point symmetry operation' ? ? 0.582736 -0.726007 0.365148 0.1987 0.562975 0.802233 -0.787996 -0.394935 0.472323 72.06055 -32.85314 134.26193 26 'point symmetry operation' ? ? -0.439649 0.647031 0.622945 -0.121427 0.644385 -0.754999 -0.889924 -0.407576 -0.204736 248.91549 19.28648 150.50499 27 'point symmetry operation' ? ? -0.362097 -0.480943 0.798486 -0.384375 0.857435 0.342142 -0.8492 -0.183029 -0.495337 235.38364 66.63964 143.06634 28 'point symmetry operation' ? ? -0.092412 -0.976003 -0.197174 -0.404503 -0.144147 0.903105 -0.909856 0.163215 -0.381475 186.92991 70.67914 153.86842 29 'point symmetry operation' ? ? -0.003288 -0.153994 -0.988066 -0.153994 -0.976208 0.152659 -0.988066 0.152659 -0.020504 170.51571 25.82253 167.98313 30 'point symmetry operation' ? ? -0.217893 0.849096 -0.481205 0.020957 -0.488868 -0.872106 -0.975748 -0.20011 0.088727 208.82491 -5.93988 165.90441 31 'point symmetry operation' ? ? 0.192074 -0.796085 0.573895 0.438127 -0.453714 -0.776008 0.878153 0.40049 0.26164 139.56469 -77.4448 -152.13009 32 'point symmetry operation' ? ? 0.429726 -0.72156 -0.54285 0.297864 0.680817 -0.669153 0.852416 0.125857 0.507491 96.6582 -52.60156 -147.37477 33 'point symmetry operation' ? ? 0.381784 0.38187 -0.841675 0.034336 0.904166 0.425798 0.923614 -0.191463 0.332084 104.85814 -5.14808 -160.0907 34 'point symmetry operation' ? ? 0.114501 0.989303 0.090387 0.01173 -0.092326 0.99566 0.993354 -0.112944 -0.022176 152.83247 -0.66346 -172.70489 35 'point symmetry operation' ? ? -0.002746 0.261286 0.965258 0.261286 -0.931542 0.252903 0.965258 0.252903 -0.065713 174.2823 -45.34529 -167.78496 36 'point symmetry operation' ? ? -0.498502 0.553059 -0.667548 -0.622614 0.307398 0.719624 0.603198 0.774359 0.191104 256.56594 108.03606 -104.82773 37 'point symmetry operation' ? ? -0.713704 0.647156 0.267984 -0.468835 -0.725612 0.503668 0.520404 0.233829 0.821282 295.35333 80.71288 -89.67025 38 'point symmetry operation' ? ? -0.710301 -0.232123 0.664523 -0.232123 -0.81401 -0.532454 0.664523 -0.532454 0.524311 295.09774 38.04237 -115.35932 39 'point symmetry operation' ? ? -0.492997 -0.869645 -0.025935 -0.239606 0.164367 -0.956856 0.836387 -0.465512 -0.289404 256.15239 38.99372 -146.39351 40 'point symmetry operation' ? ? -0.362097 -0.384375 -0.8492 -0.480943 0.857435 -0.183029 0.798486 0.342142 -0.495337 232.33843 82.2522 -139.88463 41 'point symmetry operation' ? ? 0.746077 0.305914 -0.591427 -0.404005 -0.49807 -0.767272 -0.529291 0.811384 -0.248007 42.67825 67.29334 89.0143 42 'point symmetry operation' ? ? 0.534806 0.836144 0.12184 -0.503814 0.431303 -0.748431 -0.678346 0.338881 0.651925 80.57868 84.92169 116.09871 43 'point symmetry operation' ? ? 0.429726 0.297864 0.852416 -0.72156 0.680817 0.125857 -0.54285 -0.669153 0.507491 99.75614 124.10483 92.06388 44 'point symmetry operation' ? ? 0.576053 -0.565041 0.59067 -0.756326 -0.094348 0.647356 -0.310054 -0.81965 -0.481705 73.70803 130.69299 50.12513 45 'point symmetry operation' ? ? 0.771569 -0.560066 -0.301674 -0.560066 -0.82294 0.095372 -0.301674 0.095372 -0.948629 38.43195 95.58156 48.24039 46 'point symmetry operation' ? ? 0.192074 0.438127 0.878153 -0.796085 -0.453714 0.40049 0.573895 -0.776008 0.26164 140.71739 136.89419 -100.39005 47 'point symmetry operation' ? ? 0.334611 -0.608352 0.719682 -0.608352 -0.722696 -0.328051 0.719682 -0.328051 -0.611915 115.42788 103.13383 -126.87487 48 'point symmetry operation' ? ? 0.576053 -0.756326 -0.310054 -0.565041 -0.094348 -0.81965 0.59067 0.647356 -0.481705 71.92824 95.06383 -103.99643 49 'point symmetry operation' ? ? 0.582736 0.1987 -0.787996 -0.726007 0.562975 -0.394935 0.365148 0.802233 0.472323 70.33349 123.83664 -63.37195 50 'point symmetry operation' ? ? 0.345423 0.936913 -0.053643 -0.8688 0.340875 0.359153 0.354781 -0.077455 0.931736 112.84752 149.68923 -61.14308 51 'point symmetry operation' ? ? -0.498502 -0.622614 0.603198 0.553059 0.307398 0.774359 -0.667548 0.719624 0.191104 258.39526 -93.93198 113.55791 52 'point symmetry operation' ? ? -0.250906 -0.880008 -0.403278 0.674738 -0.457711 0.578989 -0.6941 -0.126835 0.708617 213.82997 -115.57296 118.69308 53 'point symmetry operation' ? ? -0.217893 0.020957 -0.975748 0.849096 -0.488868 -0.20011 -0.481205 -0.872106 0.088727 207.50675 -147.01711 80.58732 54 'point symmetry operation' ? ? -0.445085 0.835176 -0.323078 0.835176 0.256985 -0.48625 -0.323078 -0.48625 -0.8119 248.16407 -144.80968 51.9015 55 'point symmetry operation' ? ? -0.618512 0.437428 0.652764 0.652216 0.749105 0.116005 -0.438245 0.497493 -0.748627 279.61489 -112.00127 72.27844 56 'point symmetry operation' ? ? -0.439649 -0.121427 -0.889924 0.647031 0.644385 -0.407576 0.622945 -0.754999 -0.204736 245.71529 -112.14166 -109.68542 57 'point symmetry operation' ? ? -0.618512 0.652216 -0.438245 0.437428 0.749105 0.497493 0.652764 0.116005 -0.748627 277.66965 -74.36867 -115.42016 58 'point symmetry operation' ? ? -0.787887 0.437505 0.433386 0.437505 -0.0976 0.893903 0.433386 0.893903 -0.114513 308.31505 -74.03766 -76.15802 59 'point symmetry operation' ? ? -0.713704 -0.468835 0.520404 0.647156 -0.725612 0.233829 0.267984 0.503668 0.821282 295.3006 -111.60607 -46.15793 60 'point symmetry operation' ? ? -0.498481 -0.814274 -0.297446 0.77665 -0.26704 -0.57053 0.385138 -0.51541 0.76552 256.61182 -135.15563 -66.879 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4AR2 _atom_sites.fract_transf_matrix[1][1] 0.00289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id CA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id CA _pdbx_nonpoly_scheme.auth_mon_id CA _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 72.766 _atom_site.Cartn_y -10.562 _atom_site.Cartn_z -23.575 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 999 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #