data_4AR4 # _model_server_result.job_id OKm319pL7knVwZ61uJjZpQ _model_server_result.datetime_utc '2024-12-26 12:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ar4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1060}' # _entry.id 4AR4 # _exptl.entry_id 4AR4 _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 22.042 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trideuteriooxidanium _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AR4 _cell.length_a 34.375 _cell.length_b 35.183 _cell.length_c 43.994 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 6 A CYS 5 1_555 B FE FE . A FE 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc2 A SG CYS 9 A CYS 8 1_555 B FE FE . A FE 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A SG CYS 39 A CYS 38 1_555 B FE FE . A FE 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A SG CYS 42 A CYS 41 1_555 B FE FE . A FE 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'D3 O 1' _chem_comp.formula_weight 22.042 _chem_comp.id D3O _chem_comp.mon_nstd_flag . _chem_comp.name trideuteriooxidanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'perdeuterated oxonium' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O D1 D3O sing 57 n n O D2 D3O sing 58 n n O D3 D3O sing 59 n n # _atom_sites.entry_id 4AR4 _atom_sites.fract_transf_matrix[1][1] 0.029091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 1054 1054 FE FE . C 3 D8U A 1 1055 1055 D8U D8U . D 3 D8U A 1 1056 1056 D8U D8U . E 4 D3O A 1 1057 1057 D3O D3O . F 4 D3O A 1 1058 1058 D3O D3O . G 4 D3O A 1 1059 1059 D3O D3O . H 4 D3O A 1 1060 1060 D3O D3O . I 5 DOD A 1 2004 2004 DOD DOD . I 5 DOD A 2 2005 2005 DOD DOD . I 5 DOD A 3 2006 2006 DOD DOD . I 5 DOD A 4 2007 2007 DOD DOD . I 5 DOD A 5 2009 2009 DOD DOD . I 5 DOD A 6 2010 2010 DOD DOD . I 5 DOD A 7 2011 2011 DOD DOD . I 5 DOD A 8 2012 2012 DOD DOD . I 5 DOD A 9 2013 2013 DOD DOD . I 5 DOD A 10 2014 2014 DOD DOD . I 5 DOD A 11 2015 2015 DOD DOD . I 5 DOD A 12 2016 2016 DOD DOD . I 5 DOD A 13 2017 2017 DOD DOD . I 5 DOD A 14 2018 2018 DOD DOD . I 5 DOD A 15 2020 2020 DOD DOD . I 5 DOD A 16 2021 2021 DOD DOD . I 5 DOD A 17 2022 2022 DOD DOD . I 5 DOD A 18 2023 2023 DOD DOD . I 5 DOD A 19 2024 2024 DOD DOD . I 5 DOD A 20 2026 2026 DOD DOD . I 5 DOD A 21 2027 2027 DOD DOD . I 5 DOD A 22 2028 2028 DOD DOD . I 5 DOD A 23 2029 2029 DOD DOD . I 5 DOD A 24 2030 2030 DOD DOD . I 5 DOD A 25 2031 2031 DOD DOD . I 5 DOD A 26 2032 2032 DOD DOD . I 5 DOD A 27 2033 2033 DOD DOD . I 5 DOD A 28 2034 2034 DOD DOD . I 5 DOD A 29 2035 2035 DOD DOD . I 5 DOD A 30 2036 2036 DOD DOD . I 5 DOD A 31 2037 2037 DOD DOD . I 5 DOD A 32 2038 2038 DOD DOD . I 5 DOD A 33 2039 2039 DOD DOD . I 5 DOD A 34 2040 2040 DOD DOD . I 5 DOD A 35 2041 2041 DOD DOD . I 5 DOD A 36 2042 2042 DOD DOD . I 5 DOD A 37 2043 2043 DOD DOD . I 5 DOD A 38 2044 2044 DOD DOD . I 5 DOD A 39 2045 2045 DOD DOD . I 5 DOD A 40 2046 2046 DOD DOD . I 5 DOD A 41 2047 2047 DOD DOD . I 5 DOD A 42 2048 2048 DOD DOD . I 5 DOD A 43 2049 2049 DOD DOD . I 5 DOD A 44 2050 2050 DOD DOD . I 5 DOD A 45 2051 2051 DOD DOD . I 5 DOD A 46 2052 2052 DOD DOD . I 5 DOD A 47 2053 2053 DOD DOD . I 5 DOD A 48 2054 2054 DOD DOD . I 5 DOD A 49 2055 2055 DOD DOD . I 5 DOD A 50 2056 2056 DOD DOD . I 5 DOD A 51 2057 2057 DOD DOD . I 5 DOD A 52 2058 2058 DOD DOD . I 5 DOD A 53 2060 2060 DOD DOD . I 5 DOD A 54 2063 2063 DOD DOD . I 5 DOD A 55 2064 2064 DOD DOD . I 5 DOD A 56 2065 2065 DOD DOD . I 5 DOD A 57 2066 2066 DOD DOD . I 5 DOD A 58 2067 2067 DOD DOD . I 5 DOD A 59 2069 2069 DOD DOD . I 5 DOD A 60 2070 2070 DOD DOD . I 5 DOD A 61 2073 2073 DOD DOD . I 5 DOD A 62 2074 2074 DOD DOD . I 5 DOD A 63 2075 2075 DOD DOD . I 5 DOD A 64 2076 2076 DOD DOD . I 5 DOD A 65 2077 2077 DOD DOD . I 5 DOD A 66 2080 2080 DOD DOD . I 5 DOD A 67 2082 2082 DOD DOD . I 5 DOD A 68 2083 2083 DOD DOD . I 5 DOD A 69 2085 2085 DOD DOD . I 5 DOD A 70 2086 2086 DOD DOD . I 5 DOD A 71 2087 2087 DOD DOD . I 5 DOD A 72 2088 2088 DOD DOD . I 5 DOD A 73 2089 2089 DOD DOD . I 5 DOD A 74 2090 2090 DOD DOD . I 5 DOD A 75 2091 2091 DOD DOD . I 5 DOD A 76 2092 2092 DOD DOD . I 5 DOD A 77 2095 2095 DOD DOD . I 5 DOD A 78 2096 2096 DOD DOD . I 5 DOD A 79 2097 2097 DOD DOD . I 5 DOD A 80 2098 2098 DOD DOD . I 5 DOD A 81 2099 2099 DOD DOD . I 5 DOD A 82 2101 2101 DOD DOD . I 5 DOD A 83 2105 2105 DOD DOD . I 5 DOD A 84 2109 2109 DOD DOD . I 5 DOD A 85 2110 2110 DOD DOD . I 5 DOD A 86 2111 2111 DOD DOD . I 5 DOD A 87 2112 2112 DOD DOD . I 5 DOD A 88 2114 2114 DOD DOD . I 5 DOD A 89 2117 2117 DOD DOD . I 5 DOD A 90 2118 2118 DOD DOD . I 5 DOD A 91 2119 2119 DOD DOD . I 5 DOD A 92 2120 2120 DOD DOD . I 5 DOD A 93 2121 2121 DOD DOD . I 5 DOD A 94 2122 2122 DOD DOD . I 5 DOD A 95 2123 2123 DOD DOD . I 5 DOD A 96 2124 2124 DOD DOD . I 5 DOD A 97 2125 2125 DOD DOD . I 5 DOD A 98 2126 2126 DOD DOD . I 5 DOD A 99 2127 2127 DOD DOD . I 5 DOD A 100 2128 2128 DOD DOD . I 5 DOD A 101 2129 2129 DOD DOD . I 5 DOD A 102 2130 2130 DOD DOD . I 5 DOD A 103 2131 2131 DOD DOD . I 5 DOD A 104 2132 2132 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O D3O . . . H 4 18.738 36.183 15.309 1 33 ? O D3O 1060 A 1 HETATM 2 D D1 D3O . . . H 4 18.978 35.828 16.093 1 23.7 ? D1 D3O 1060 A 1 HETATM 3 D D2 D3O . . . H 4 18.001 35.777 15.013 1 22.88 ? D2 D3O 1060 A 1 HETATM 4 D D3 D3O . . . H 4 18.579 37.057 15.403 0.5 19.58 ? D3 D3O 1060 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #