data_4ARF # _model_server_result.job_id -og3FSeM2kiFNSE26FKBpQ _model_server_result.datetime_utc '2024-11-22 17:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4arf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 4ARF # _exptl.entry_id 4ARF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ARF _cell.length_a 79.87 _cell.length_b 106.78 _cell.length_c 51.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ARF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B P1 IP8 1 B IP8 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.731 ? metalc ? metalc1 A OE2 GLU 103 A GLU 430 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A NE2 HIS 128 A HIS 455 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 A NE2 HIS 132 A HIS 459 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 A O GLY 136 A GLY 463 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A O VAL 140 A VAL 467 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A O GLY 142 A GLY 469 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc7 A OE1 GLU 160 A GLU 487 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc8 C ZN ZN . A ZN 801 1_555 B O2 IP8 1 B IP8 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc9 D CA CA . A CA 802 1_555 E O HOH . A HOH 945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 D CA CA . A CA 802 1_555 E O HOH . A HOH 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ARF _atom_sites.fract_transf_matrix[1][1] 0.01252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 801 1722 ZN ZN . D 4 CA A 1 802 1723 CA CA . E 5 HOH A 1 901 2096 HOH HOH . E 5 HOH A 2 902 2219 HOH HOH . E 5 HOH A 3 903 2143 HOH HOH . E 5 HOH A 4 904 2230 HOH HOH . E 5 HOH A 5 905 2258 HOH HOH . E 5 HOH A 6 906 2140 HOH HOH . E 5 HOH A 7 907 2147 HOH HOH . E 5 HOH A 8 908 2001 HOH HOH . E 5 HOH A 9 909 2263 HOH HOH . E 5 HOH A 10 910 2003 HOH HOH . E 5 HOH A 11 911 2010 HOH HOH . E 5 HOH A 12 912 2007 HOH HOH . E 5 HOH A 13 913 2052 HOH HOH . E 5 HOH A 14 914 2134 HOH HOH . E 5 HOH A 15 915 2211 HOH HOH . E 5 HOH A 16 916 2044 HOH HOH . E 5 HOH A 17 917 2085 HOH HOH . E 5 HOH A 18 918 2012 HOH HOH . E 5 HOH A 19 919 2248 HOH HOH . E 5 HOH A 20 920 2063 HOH HOH . E 5 HOH A 21 921 2094 HOH HOH . E 5 HOH A 22 922 2183 HOH HOH . E 5 HOH A 23 923 2078 HOH HOH . E 5 HOH A 24 924 2197 HOH HOH . E 5 HOH A 25 925 2067 HOH HOH . E 5 HOH A 26 926 2060 HOH HOH . E 5 HOH A 27 927 2152 HOH HOH . E 5 HOH A 28 928 2108 HOH HOH . E 5 HOH A 29 929 2225 HOH HOH . E 5 HOH A 30 930 2038 HOH HOH . E 5 HOH A 31 931 2178 HOH HOH . E 5 HOH A 32 932 2247 HOH HOH . E 5 HOH A 33 933 2130 HOH HOH . E 5 HOH A 34 934 2210 HOH HOH . E 5 HOH A 35 935 2233 HOH HOH . E 5 HOH A 36 936 2116 HOH HOH . E 5 HOH A 37 937 2070 HOH HOH . E 5 HOH A 38 938 2148 HOH HOH . E 5 HOH A 39 939 2206 HOH HOH . E 5 HOH A 40 940 2204 HOH HOH . E 5 HOH A 41 941 2127 HOH HOH . E 5 HOH A 42 942 2103 HOH HOH . E 5 HOH A 43 943 2099 HOH HOH . E 5 HOH A 44 944 2252 HOH HOH . E 5 HOH A 45 945 2076 HOH HOH . E 5 HOH A 46 946 2160 HOH HOH . E 5 HOH A 47 947 2167 HOH HOH . E 5 HOH A 48 948 2027 HOH HOH . E 5 HOH A 49 949 2262 HOH HOH . E 5 HOH A 50 950 2142 HOH HOH . E 5 HOH A 51 951 2151 HOH HOH . E 5 HOH A 52 952 2139 HOH HOH . E 5 HOH A 53 953 2089 HOH HOH . E 5 HOH A 54 954 2144 HOH HOH . E 5 HOH A 55 955 2149 HOH HOH . E 5 HOH A 56 956 2224 HOH HOH . E 5 HOH A 57 957 2180 HOH HOH . E 5 HOH A 58 958 2091 HOH HOH . E 5 HOH A 59 959 2173 HOH HOH . E 5 HOH A 60 960 2185 HOH HOH . E 5 HOH A 61 961 2162 HOH HOH . E 5 HOH A 62 962 2065 HOH HOH . E 5 HOH A 63 963 2032 HOH HOH . E 5 HOH A 64 964 2049 HOH HOH . E 5 HOH A 65 965 2168 HOH HOH . E 5 HOH A 66 966 2249 HOH HOH . E 5 HOH A 67 967 2208 HOH HOH . E 5 HOH A 68 968 2033 HOH HOH . E 5 HOH A 69 969 2120 HOH HOH . E 5 HOH A 70 970 2216 HOH HOH . E 5 HOH A 71 971 2064 HOH HOH . E 5 HOH A 72 972 2179 HOH HOH . E 5 HOH A 73 973 2232 HOH HOH . E 5 HOH A 74 974 2051 HOH HOH . E 5 HOH A 75 975 2259 HOH HOH . E 5 HOH A 76 976 2026 HOH HOH . E 5 HOH A 77 977 2050 HOH HOH . E 5 HOH A 78 978 2084 HOH HOH . E 5 HOH A 79 979 2131 HOH HOH . E 5 HOH A 80 980 2222 HOH HOH . E 5 HOH A 81 981 2242 HOH HOH . E 5 HOH A 82 982 2115 HOH HOH . E 5 HOH A 83 983 2080 HOH HOH . E 5 HOH A 84 984 2119 HOH HOH . E 5 HOH A 85 985 2054 HOH HOH . E 5 HOH A 86 986 2035 HOH HOH . E 5 HOH A 87 987 2097 HOH HOH . E 5 HOH A 88 988 2016 HOH HOH . E 5 HOH A 89 989 2125 HOH HOH . E 5 HOH A 90 990 2093 HOH HOH . E 5 HOH A 91 991 2098 HOH HOH . E 5 HOH A 92 992 2034 HOH HOH . E 5 HOH A 93 993 2020 HOH HOH . E 5 HOH A 94 994 2189 HOH HOH . E 5 HOH A 95 995 2141 HOH HOH . E 5 HOH A 96 996 2254 HOH HOH . E 5 HOH A 97 997 2081 HOH HOH . E 5 HOH A 98 998 2118 HOH HOH . E 5 HOH A 99 999 2025 HOH HOH . E 5 HOH A 100 1000 2260 HOH HOH . E 5 HOH A 101 1001 2136 HOH HOH . E 5 HOH A 102 1002 2137 HOH HOH . E 5 HOH A 103 1003 2037 HOH HOH . E 5 HOH A 104 1004 2266 HOH HOH . E 5 HOH A 105 1005 2207 HOH HOH . E 5 HOH A 106 1006 2009 HOH HOH . E 5 HOH A 107 1007 2221 HOH HOH . E 5 HOH A 108 1008 2082 HOH HOH . E 5 HOH A 109 1009 2087 HOH HOH . E 5 HOH A 110 1010 2215 HOH HOH . E 5 HOH A 111 1011 2005 HOH HOH . E 5 HOH A 112 1012 2175 HOH HOH . E 5 HOH A 113 1013 2062 HOH HOH . E 5 HOH A 114 1014 2234 HOH HOH . E 5 HOH A 115 1015 2133 HOH HOH . E 5 HOH A 116 1016 2165 HOH HOH . E 5 HOH A 117 1017 2019 HOH HOH . E 5 HOH A 118 1018 2264 HOH HOH . E 5 HOH A 119 1019 2061 HOH HOH . E 5 HOH A 120 1020 2114 HOH HOH . E 5 HOH A 121 1021 2243 HOH HOH . E 5 HOH A 122 1022 2068 HOH HOH . E 5 HOH A 123 1023 2164 HOH HOH . E 5 HOH A 124 1024 2212 HOH HOH . E 5 HOH A 125 1025 2021 HOH HOH . E 5 HOH A 126 1026 2265 HOH HOH . E 5 HOH A 127 1027 2128 HOH HOH . E 5 HOH A 128 1028 2228 HOH HOH . E 5 HOH A 129 1029 2170 HOH HOH . E 5 HOH A 130 1030 2214 HOH HOH . E 5 HOH A 131 1031 2083 HOH HOH . E 5 HOH A 132 1032 2024 HOH HOH . E 5 HOH A 133 1033 2111 HOH HOH . E 5 HOH A 134 1034 2048 HOH HOH . E 5 HOH A 135 1035 2011 HOH HOH . E 5 HOH A 136 1036 2104 HOH HOH . E 5 HOH A 137 1037 2090 HOH HOH . E 5 HOH A 138 1038 2086 HOH HOH . E 5 HOH A 139 1039 2261 HOH HOH . E 5 HOH A 140 1040 2045 HOH HOH . E 5 HOH A 141 1041 2251 HOH HOH . E 5 HOH A 142 1042 2191 HOH HOH . E 5 HOH A 143 1043 2075 HOH HOH . E 5 HOH A 144 1044 2236 HOH HOH . E 5 HOH A 145 1045 2043 HOH HOH . E 5 HOH A 146 1046 2192 HOH HOH . E 5 HOH A 147 1047 2014 HOH HOH . E 5 HOH A 148 1048 2092 HOH HOH . E 5 HOH A 149 1049 2023 HOH HOH . E 5 HOH A 150 1050 2231 HOH HOH . E 5 HOH A 151 1051 2088 HOH HOH . E 5 HOH A 152 1052 2030 HOH HOH . E 5 HOH A 153 1053 2250 HOH HOH . E 5 HOH A 154 1054 2117 HOH HOH . E 5 HOH A 155 1055 2071 HOH HOH . E 5 HOH A 156 1056 2202 HOH HOH . E 5 HOH A 157 1057 2220 HOH HOH . E 5 HOH A 158 1058 2172 HOH HOH . E 5 HOH A 159 1059 2226 HOH HOH . E 5 HOH A 160 1060 2159 HOH HOH . E 5 HOH A 161 1061 2223 HOH HOH . E 5 HOH A 162 1062 2176 HOH HOH . E 5 HOH A 163 1063 2245 HOH HOH . E 5 HOH A 164 1064 2066 HOH HOH . E 5 HOH A 165 1065 2156 HOH HOH . E 5 HOH A 166 1066 2244 HOH HOH . E 5 HOH A 167 1067 2059 HOH HOH . E 5 HOH A 168 1068 2056 HOH HOH . E 5 HOH A 169 1069 2246 HOH HOH . E 5 HOH A 170 1070 2122 HOH HOH . E 5 HOH A 171 1071 2257 HOH HOH . E 5 HOH A 172 1072 2022 HOH HOH . E 5 HOH A 173 1073 2229 HOH HOH . E 5 HOH A 174 1074 2031 HOH HOH . E 5 HOH A 175 1075 2053 HOH HOH . E 5 HOH A 176 1076 2203 HOH HOH . E 5 HOH A 177 1077 2102 HOH HOH . E 5 HOH A 178 1078 2123 HOH HOH . E 5 HOH A 179 1079 2126 HOH HOH . E 5 HOH A 180 1080 2008 HOH HOH . E 5 HOH A 181 1081 2213 HOH HOH . E 5 HOH A 182 1082 2069 HOH HOH . E 5 HOH A 183 1083 2036 HOH HOH . E 5 HOH A 184 1084 2112 HOH HOH . E 5 HOH A 185 1085 2042 HOH HOH . E 5 HOH A 186 1086 2193 HOH HOH . E 5 HOH A 187 1087 2106 HOH HOH . E 5 HOH A 188 1088 2238 HOH HOH . E 5 HOH A 189 1089 2235 HOH HOH . E 5 HOH A 190 1090 2002 HOH HOH . E 5 HOH A 191 1091 2015 HOH HOH . E 5 HOH A 192 1092 2013 HOH HOH . E 5 HOH A 193 1093 2194 HOH HOH . E 5 HOH A 194 1094 2039 HOH HOH . E 5 HOH A 195 1095 2146 HOH HOH . E 5 HOH A 196 1096 2240 HOH HOH . E 5 HOH A 197 1097 2171 HOH HOH . E 5 HOH A 198 1098 2006 HOH HOH . E 5 HOH A 199 1099 2158 HOH HOH . E 5 HOH A 200 1100 2150 HOH HOH . E 5 HOH A 201 1101 2017 HOH HOH . E 5 HOH A 202 1102 2040 HOH HOH . E 5 HOH A 203 1103 2077 HOH HOH . E 5 HOH A 204 1104 2256 HOH HOH . E 5 HOH A 205 1105 2218 HOH HOH . E 5 HOH A 206 1106 2195 HOH HOH . E 5 HOH A 207 1107 2058 HOH HOH . E 5 HOH A 208 1108 2196 HOH HOH . E 5 HOH A 209 1109 2155 HOH HOH . E 5 HOH A 210 1110 2029 HOH HOH . E 5 HOH A 211 1111 2205 HOH HOH . E 5 HOH A 212 1112 2004 HOH HOH . E 5 HOH A 213 1113 2237 HOH HOH . E 5 HOH A 214 1114 2187 HOH HOH . E 5 HOH A 215 1115 2190 HOH HOH . E 5 HOH A 216 1116 2253 HOH HOH . E 5 HOH A 217 1117 2145 HOH HOH . E 5 HOH A 218 1118 2135 HOH HOH . E 5 HOH A 219 1119 2241 HOH HOH . E 5 HOH A 220 1120 2028 HOH HOH . E 5 HOH A 221 1121 2041 HOH HOH . E 5 HOH A 222 1122 2095 HOH HOH . E 5 HOH A 223 1123 2163 HOH HOH . E 5 HOH A 224 1124 2255 HOH HOH . E 5 HOH A 225 1125 2198 HOH HOH . E 5 HOH A 226 1126 2055 HOH HOH . E 5 HOH A 227 1127 2046 HOH HOH . E 5 HOH A 228 1128 2166 HOH HOH . E 5 HOH A 229 1129 2124 HOH HOH . E 5 HOH A 230 1130 2157 HOH HOH . E 5 HOH A 231 1131 2201 HOH HOH . E 5 HOH A 232 1132 2239 HOH HOH . E 5 HOH A 233 1133 2186 HOH HOH . E 5 HOH A 234 1134 2057 HOH HOH . E 5 HOH A 235 1135 2073 HOH HOH . E 5 HOH A 236 1136 2188 HOH HOH . E 5 HOH A 237 1137 2018 HOH HOH . E 5 HOH A 238 1138 2199 HOH HOH . E 5 HOH A 239 1139 2161 HOH HOH . E 5 HOH A 240 1140 2209 HOH HOH . E 5 HOH A 241 1141 2217 HOH HOH . E 5 HOH A 242 1142 2227 HOH HOH . E 5 HOH A 243 1143 2200 HOH HOH . E 5 HOH A 244 1144 2047 HOH HOH . E 5 HOH A 245 1145 2177 HOH HOH . E 5 HOH A 246 1146 2184 HOH HOH . E 5 HOH A 247 1147 2107 HOH HOH . E 5 HOH A 248 1148 2153 HOH HOH . E 5 HOH A 249 1149 2181 HOH HOH . E 5 HOH A 250 1150 2182 HOH HOH . E 5 HOH A 251 1151 2100 HOH HOH . E 5 HOH A 252 1152 2110 HOH HOH . E 5 HOH A 253 1153 2105 HOH HOH . E 5 HOH A 254 1154 2101 HOH HOH . E 5 HOH A 255 1155 2154 HOH HOH . E 5 HOH A 256 1156 2113 HOH HOH . E 5 HOH A 257 1157 2132 HOH HOH . E 5 HOH A 258 1158 2174 HOH HOH . E 5 HOH A 259 1159 2121 HOH HOH . E 5 HOH A 260 1160 2109 HOH HOH . E 5 HOH A 261 1161 2138 HOH HOH . E 5 HOH A 262 1162 2129 HOH HOH . E 5 HOH A 263 1163 2169 HOH HOH . E 5 HOH A 264 1164 2072 HOH HOH . F 5 HOH B 1 101 2074 HOH HOH . F 5 HOH B 2 102 2001 HOH HOH . F 5 HOH B 3 103 2079 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.888 _atom_site.Cartn_y 16.382 _atom_site.Cartn_z -18.15 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #