data_4ARK # _model_server_result.job_id 6DOQgVhBu_D7HCE1JD738w _model_server_result.datetime_utc '2024-11-29 02:13:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ark # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1385}' # _entry.id 4ARK # _exptl.entry_id 4ARK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.229 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-([3R-3,4-dihydroxybutyl]oxy)-4-fluoro-6-[(2-fluoro-4-iodophenyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ARK _cell.length_a 82.411 _cell.length_b 82.411 _cell.length_c 130.238 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ARK _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 41.2055 71.37002 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 B O2B ADP . A ADP 1383 1_555 C MG MG . A MG 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc4 B O2A ADP . A ADP 1383 1_555 C MG MG . A MG 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 C MG MG . A MG 1384 1_555 E O HOH . A HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc6 C MG MG . A MG 1384 1_555 E O HOH . A HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C17 H17 F2 I N2 O4' _chem_comp.formula_weight 478.229 _chem_comp.id M3K _chem_comp.mon_nstd_flag . _chem_comp.name 2-([3R-3,4-dihydroxybutyl]oxy)-4-fluoro-6-[(2-fluoro-4-iodophenyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 M3K sing 262 n y C01 C06 M3K doub 263 n y C01 N07 M3K sing 264 n n C02 C03 M3K doub 265 n y C03 C04 M3K sing 266 n y C04 C05 M3K doub 267 n y C04 I23 M3K sing 268 n n C05 C06 M3K sing 269 n y C06 F24 M3K sing 270 n n N07 C08 M3K sing 271 n n C08 C09 M3K sing 272 n y C08 C13 M3K doub 273 n y C09 C10 M3K doub 274 n y C09 C14 M3K sing 275 n n C10 C11 M3K sing 276 n y C10 O1 M3K sing 277 n n C11 C12 M3K doub 278 n y C12 C13 M3K sing 279 n y C12 F26 M3K sing 280 n n C14 N15 M3K sing 281 n n C14 O16 M3K doub 282 n n C18 C19 M3K sing 283 n n C18 C15 M3K sing 284 n n C19 C20 M3K sing 285 n n C19 O21 M3K sing 286 n n C20 O22 M3K sing 287 n n C15 O1 M3K sing 288 n n C02 H02 M3K sing 289 n n N07 H07 M3K sing 290 n n C03 H03 M3K sing 291 n n C05 H05 M3K sing 292 n n C13 H13 M3K sing 293 n n C11 H11 M3K sing 294 n n N15 H151 M3K sing 295 n n N15 H152 M3K sing 296 n n C18 H181 M3K sing 297 n n C18 H182 M3K sing 298 n n C19 H19 M3K sing 299 n n C15 HA1 M3K sing 300 n n C15 HB2 M3K sing 301 n n C20 H201 M3K sing 302 n n C20 H202 M3K sing 303 n n O21 H21 M3K sing 304 n n O22 H22 M3K sing 305 n n # _atom_sites.entry_id 4ARK _atom_sites.fract_transf_matrix[1][1] 0.012134 _atom_sites.fract_transf_matrix[1][2] 0.007006 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1383 1383 ADP ADP . C 3 MG A 1 1384 1384 MG MG . D 4 M3K A 1 1385 1385 M3K M3K . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 M3K . . . D 4 34.247 27.239 42.437 1 72.96 ? C01 M3K 1385 A 1 HETATM 2 C C02 M3K . . . D 4 35.213 26.438 41.889 1 72.7 ? C02 M3K 1385 A 1 HETATM 3 C C03 M3K . . . D 4 36.518 26.504 42.32 1 73.65 ? C03 M3K 1385 A 1 HETATM 4 C C04 M3K . . . D 4 36.905 27.375 43.309 1 75.52 ? C04 M3K 1385 A 1 HETATM 5 C C05 M3K . . . D 4 35.932 28.177 43.851 1 75.72 ? C05 M3K 1385 A 1 HETATM 6 C C06 M3K . . . D 4 34.627 28.104 43.42 1 74.66 ? C06 M3K 1385 A 1 HETATM 7 N N07 M3K . . . D 4 32.885 27.224 42.041 1 70.9 ? N07 M3K 1385 A 1 HETATM 8 C C08 M3K . . . D 4 32.205 26.488 41.041 1 68.56 ? C08 M3K 1385 A 1 HETATM 9 C C09 M3K . . . D 4 31.273 27.103 40.243 1 68.45 ? C09 M3K 1385 A 1 HETATM 10 C C10 M3K . . . D 4 30.61 26.414 39.276 1 68 ? C10 M3K 1385 A 1 HETATM 11 C C11 M3K . . . D 4 30.85 25.086 39.084 1 66.97 ? C11 M3K 1385 A 1 HETATM 12 C C12 M3K . . . D 4 31.764 24.457 39.871 1 67.64 ? C12 M3K 1385 A 1 HETATM 13 C C13 M3K . . . D 4 32.435 25.151 40.842 1 67.45 ? C13 M3K 1385 A 1 HETATM 14 C C14 M3K . . . D 4 30.943 28.512 40.368 1 67.96 ? C14 M3K 1385 A 1 HETATM 15 N N15 M3K . . . D 4 30.256 29.146 39.382 1 68.26 ? N15 M3K 1385 A 1 HETATM 16 O O16 M3K . . . D 4 31.281 29.119 41.322 1 66.02 ? O16 M3K 1385 A 1 HETATM 17 C C18 M3K . . . D 4 28.396 27.567 36.594 1 81.44 ? C18 M3K 1385 A 1 HETATM 18 C C19 M3K . . . D 4 29.383 28.167 35.607 1 86.18 ? C19 M3K 1385 A 1 HETATM 19 C C20 M3K . . . D 4 28.678 29.174 34.717 1 88.69 ? C20 M3K 1385 A 1 HETATM 20 O O21 M3K . . . D 4 29.901 27.147 34.784 1 87.77 ? O21 M3K 1385 A 1 HETATM 21 O O22 M3K . . . D 4 28.087 30.151 35.547 1 90.96 ? O22 M3K 1385 A 1 HETATM 22 I I23 M3K . . . D 4 38.851 27.448 43.928 1 74.23 ? I23 M3K 1385 A 1 HETATM 23 C C15 M3K . . . D 4 29.105 26.497 37.405 1 76.76 ? C15 M3K 1385 A 1 HETATM 24 F F24 M3K . . . D 4 33.726 28.883 43.951 1 73.82 ? F24 M3K 1385 A 1 HETATM 25 F F26 M3K . . . D 4 32.001 23.184 39.683 1 66.45 ? F26 M3K 1385 A 1 HETATM 26 O O1 M3K . . . D 4 29.713 27.079 38.531 1 72.26 ? O1 M3K 1385 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #