data_4ARZ # _model_server_result.job_id 8TuHIbSBIbEVcI-wI77f6w _model_server_result.datetime_utc '2024-11-23 09:16:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4arz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 4ARZ # _exptl.entry_id 4ARZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ARZ _cell.length_a 90.712 _cell.length_b 148.897 _cell.length_c 117.759 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ARZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 20 1_555 D MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A OG1 THR 41 A THR 41 1_555 D MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 C PG GTP . A GTP 400 1_555 D MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc4 C O1G GTP . A GTP 400 1_555 D MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc5 C O1B GTP . A GTP 400 1_555 D MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 4ARZ _atom_sites.fract_transf_matrix[1][1] 0.011024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 400 400 GTP GTP . D 4 MG A 1 500 500 MG MG . E 5 GDP B 1 400 400 GDP GDP . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH B 1 2001 2001 HOH HOH . G 6 HOH B 2 2002 2002 HOH HOH . G 6 HOH B 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 28.127 46.241 33.404 1 92.09 ? PG GTP 400 A 1 HETATM 2 O O1G GTP . . . C 3 26.765 46.888 33.419 1 92.29 ? O1G GTP 400 A 1 HETATM 3 O O2G GTP . . . C 3 28.421 45.278 32.276 1 92.15 ? O2G GTP 400 A 1 HETATM 4 O O3G GTP . . . C 3 28.399 47.286 32.36 1 91.65 ? O3G GTP 400 A 1 HETATM 5 O O3B GTP . . . C 3 29.406 46.871 34.118 1 86.52 ? O3B GTP 400 A 1 HETATM 6 P PB GTP . . . C 3 29.95 46.319 35.52 1 80.92 ? PB GTP 400 A 1 HETATM 7 O O1B GTP . . . C 3 28.907 46.443 36.578 1 81.54 ? O1B GTP 400 A 1 HETATM 8 O O2B GTP . . . C 3 31.162 47.128 35.899 1 83.73 ? O2B GTP 400 A 1 HETATM 9 O O3A GTP . . . C 3 30.325 44.786 35.291 1 80.36 ? O3A GTP 400 A 1 HETATM 10 P PA GTP . . . C 3 30.413 43.745 36.542 1 79.36 ? PA GTP 400 A 1 HETATM 11 O O1A GTP . . . C 3 29.073 43.072 36.639 1 81.94 ? O1A GTP 400 A 1 HETATM 12 O O2A GTP . . . C 3 30.79 44.31 37.872 1 77.54 ? O2A GTP 400 A 1 HETATM 13 O O5' GTP . . . C 3 31.449 42.645 36.062 1 79.44 ? O5' GTP 400 A 1 HETATM 14 C C5' GTP . . . C 3 32.807 42.734 35.838 1 78.45 ? C5' GTP 400 A 1 HETATM 15 C C4' GTP . . . C 3 33.443 41.47 36.328 1 79.38 ? C4' GTP 400 A 1 HETATM 16 O O4' GTP . . . C 3 34.683 41.867 36.88 1 78.4 ? O4' GTP 400 A 1 HETATM 17 C C3' GTP . . . C 3 32.87 40.381 37.253 1 79.85 ? C3' GTP 400 A 1 HETATM 18 O O3' GTP . . . C 3 32.978 39.305 36.338 1 81.77 ? O3' GTP 400 A 1 HETATM 19 C C2' GTP . . . C 3 33.904 40.227 38.367 1 79.29 ? C2' GTP 400 A 1 HETATM 20 O O2' GTP . . . C 3 34.45 38.946 38.532 1 81.32 ? O2' GTP 400 A 1 HETATM 21 C C1' GTP . . . C 3 35.042 41.195 38.055 1 79.16 ? C1' GTP 400 A 1 HETATM 22 N N9 GTP . . . C 3 35.342 42.115 39.128 1 78.86 ? N9 GTP 400 A 1 HETATM 23 C C8 GTP . . . C 3 34.486 42.962 39.795 1 78.88 ? C8 GTP 400 A 1 HETATM 24 N N7 GTP . . . C 3 35.221 43.612 40.724 1 79.12 ? N7 GTP 400 A 1 HETATM 25 C C5 GTP . . . C 3 36.512 43.198 40.656 1 80.03 ? C5 GTP 400 A 1 HETATM 26 C C6 GTP . . . C 3 37.7 43.51 41.361 1 80.5 ? C6 GTP 400 A 1 HETATM 27 O O6 GTP . . . C 3 37.655 44.338 42.256 1 83.56 ? O6 GTP 400 A 1 HETATM 28 N N1 GTP . . . C 3 38.939 42.919 41.086 1 80.1 ? N1 GTP 400 A 1 HETATM 29 C C2 GTP . . . C 3 39.018 41.983 40.087 1 80.5 ? C2 GTP 400 A 1 HETATM 30 N N2 GTP . . . C 3 40.145 41.36 39.75 1 81.52 ? N2 GTP 400 A 1 HETATM 31 N N3 GTP . . . C 3 37.828 41.691 39.405 1 79.29 ? N3 GTP 400 A 1 HETATM 32 C C4 GTP . . . C 3 36.593 42.256 39.651 1 79.23 ? C4 GTP 400 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #