data_4AT1 # _model_server_result.job_id W-Z32oHgX0tP8HK0Y-FVjA _model_server_result.datetime_utc '2025-01-11 14:39:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4at1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":155}' # _entry.id 4AT1 # _exptl.entry_id 4AT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AT1 _cell.length_a 122 _cell.length_b 122 _cell.length_c 142 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61 105.655099 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 109 B CYS 109 1_555 E ZN ZN . B ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 B SG CYS 114 B CYS 114 1_555 E ZN ZN . B ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 B SG CYS 138 B CYS 138 1_555 E ZN ZN . B ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 B SG CYS 141 B CYS 141 1_555 E ZN ZN . B ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 D SG CYS 109 D CYS 109 1_555 G ZN ZN . D ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 D SG CYS 114 D CYS 114 1_555 G ZN ZN . D ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 D SG CYS 138 D CYS 138 1_555 G ZN ZN . D ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 D SG CYS 141 D CYS 141 1_555 G ZN ZN . D ZN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4AT1 _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0.004717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 154 109 ZN ZN . F 4 ATP B 1 155 154 ATP ATP . G 3 ZN D 1 154 109 ZN ZN . H 4 ATP D 1 155 154 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 4 5.535 80.866 26.242 1 130.15 ? PG ATP 155 B 1 HETATM 2 O O1G ATP . . . F 4 5.049 80.712 27.705 1 132.43 ? O1G ATP 155 B 1 HETATM 3 O O2G ATP . . . F 4 5.651 82.274 25.932 1 134.48 ? O2G ATP 155 B 1 HETATM 4 O O3G ATP . . . F 4 4.484 80.413 25.485 1 134.05 ? O3G ATP 155 B 1 HETATM 5 P PB ATP . . . F 4 8.084 79.527 25.401 1 111.71 ? PB ATP 155 B 1 HETATM 6 O O1B ATP . . . F 4 7.799 79.741 23.836 1 111.26 ? O1B ATP 155 B 1 HETATM 7 O O2B ATP . . . F 4 8.554 78.217 25.892 1 108.48 ? O2B ATP 155 B 1 HETATM 8 O O3B ATP . . . F 4 6.913 80.222 26.381 1 17.19 ? O3B ATP 155 B 1 HETATM 9 P PA ATP . . . F 4 10.114 81.661 24.88 1 89.31 ? PA ATP 155 B 1 HETATM 10 O O1A ATP . . . F 4 10.718 81.009 23.643 1 93.17 ? O1A ATP 155 B 1 HETATM 11 O O2A ATP . . . F 4 8.96 82.717 24.706 1 86.42 ? O2A ATP 155 B 1 HETATM 12 O O3A ATP . . . F 4 9.391 80.563 25.686 1 16.92 ? O3A ATP 155 B 1 HETATM 13 O O5' ATP . . . F 4 11.25 82.069 25.735 1 17.05 ? O5' ATP 155 B 1 HETATM 14 C C5' ATP . . . F 4 11.254 82.029 27.303 1 77.22 ? C5' ATP 155 B 1 HETATM 15 C C4' ATP . . . F 4 12.685 81.681 27.838 1 69.94 ? C4' ATP 155 B 1 HETATM 16 O O4' ATP . . . F 4 13.618 82.336 26.79 1 21.24 ? O4' ATP 155 B 1 HETATM 17 C C3' ATP . . . F 4 13.064 82.411 28.951 1 70.75 ? C3' ATP 155 B 1 HETATM 18 O O3' ATP . . . F 4 14.043 81.51 29.708 1 74.95 ? O3' ATP 155 B 1 HETATM 19 C C2' ATP . . . F 4 13.713 83.821 28.686 1 66.98 ? C2' ATP 155 B 1 HETATM 20 O O2' ATP . . . F 4 14.55 82.961 29.641 1 66.92 ? O2' ATP 155 B 1 HETATM 21 C C1' ATP . . . F 4 14.527 83.271 27.467 1 59.31 ? C1' ATP 155 B 1 HETATM 22 N N9 ATP . . . F 4 14.605 84.348 26.429 1 51.68 ? N9 ATP 155 B 1 HETATM 23 C C8 ATP . . . F 4 13.554 84.825 25.647 1 51.44 ? C8 ATP 155 B 1 HETATM 24 N N7 ATP . . . F 4 13.867 85.956 25.022 1 48.91 ? N7 ATP 155 B 1 HETATM 25 C C5 ATP . . . F 4 15.166 86.19 25.371 1 47.2 ? C5 ATP 155 B 1 HETATM 26 C C6 ATP . . . F 4 16.063 87.276 25.066 1 49.79 ? C6 ATP 155 B 1 HETATM 27 N N6 ATP . . . F 4 15.753 88.285 24.281 1 52.32 ? N6 ATP 155 B 1 HETATM 28 N N1 ATP . . . F 4 17.262 87.218 25.71 1 50.47 ? N1 ATP 155 B 1 HETATM 29 C C2 ATP . . . F 4 17.631 86.177 26.503 1 46.65 ? C2 ATP 155 B 1 HETATM 30 N N3 ATP . . . F 4 16.872 85.158 26.826 1 45.61 ? N3 ATP 155 B 1 HETATM 31 C C4 ATP . . . F 4 15.652 85.233 26.273 1 47.28 ? C4 ATP 155 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #