data_4AT8 # _model_server_result.job_id sLi5vrPPQZz2LAXWlLFGKg _model_server_result.datetime_utc '2024-12-11 21:20:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4at8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1362}' # _entry.id 4AT8 # _exptl.entry_id 4AT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.34 _cell.angle_gamma 90 _cell.entry_id 4AT8 _cell.length_a 70.871 _cell.length_b 84.128 _cell.length_c 159.597 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 95 A ASP 121 1_555 E MG MG . A MG 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 E MG MG . A MG 1361 1_555 F O1B ATP . A ATP 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc3 E MG MG . A MG 1361 1_555 F O1A ATP . A ATP 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc4 E MG MG . A MG 1361 1_555 F O3G ATP . A ATP 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 C OD2 ASP 95 C ASP 121 1_555 H MG MG . C MG 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 G O1G ATP . C ATP 1362 1_555 H MG MG . C MG 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 G O1B ATP . C ATP 1362 1_555 H MG MG . C MG 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4AT8 _atom_sites.fract_transf_matrix[1][1] 0.01411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 1361 1361 MG MG . F 4 ATP A 1 1362 1362 ATP ATP . G 4 ATP C 1 1362 1362 ATP ATP . H 3 MG C 1 1363 1363 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 4 -29.717 1.153 -8.085 0.7 41.48 ? PG ATP 1362 C 1 HETATM 2 O O1G ATP . . . G 4 -29.482 2.354 -7.188 0.7 41.48 ? O1G ATP 1362 C 1 HETATM 3 O O2G ATP . . . G 4 -29.857 -0.062 -7.178 0.7 41.48 ? O2G ATP 1362 C 1 HETATM 4 O O3G ATP . . . G 4 -31.001 1.34 -8.924 0.7 41.48 ? O3G ATP 1362 C 1 HETATM 5 P PB ATP . . . G 4 -27.092 1.64 -8.826 0.7 41.48 ? PB ATP 1362 C 1 HETATM 6 O O1B ATP . . . G 4 -27.266 2.858 -7.893 0.7 41.48 ? O1B ATP 1362 C 1 HETATM 7 O O2B ATP . . . G 4 -26.574 2.089 -10.187 0.7 41.48 ? O2B ATP 1362 C 1 HETATM 8 O O3B ATP . . . G 4 -28.438 0.863 -8.971 0.7 41.48 ? O3B ATP 1362 C 1 HETATM 9 P PA ATP . . . G 4 -25.865 0.583 -6.623 0.7 41.48 ? PA ATP 1362 C 1 HETATM 10 O O1A ATP . . . G 4 -26.364 1.857 -5.944 0.7 41.48 ? O1A ATP 1362 C 1 HETATM 11 O O2A ATP . . . G 4 -26.567 -0.634 -6.027 0.7 41.48 ? O2A ATP 1362 C 1 HETATM 12 O O3A ATP . . . G 4 -26.082 0.687 -8.18 0.7 41.48 ? O3A ATP 1362 C 1 HETATM 13 O O5' ATP . . . G 4 -24.292 0.521 -6.383 0.7 41.48 ? O5' ATP 1362 C 1 HETATM 14 C C5' ATP . . . G 4 -23.551 1.705 -6.295 0.7 41.48 ? C5' ATP 1362 C 1 HETATM 15 C C4' ATP . . . G 4 -22.326 1.819 -7.06 0.7 41.48 ? C4' ATP 1362 C 1 HETATM 16 O O4' ATP . . . G 4 -21.575 0.563 -6.972 0.7 41.48 ? O4' ATP 1362 C 1 HETATM 17 C C3' ATP . . . G 4 -22.628 2.008 -8.49 0.7 41.48 ? C3' ATP 1362 C 1 HETATM 18 O O3' ATP . . . G 4 -21.62 2.681 -9.08 0.7 41.48 ? O3' ATP 1362 C 1 HETATM 19 C C2' ATP . . . G 4 -22.655 0.655 -9.035 0.7 41.48 ? C2' ATP 1362 C 1 HETATM 20 O O2' ATP . . . G 4 -22.245 0.666 -10.311 0.7 41.48 ? O2' ATP 1362 C 1 HETATM 21 C C1' ATP . . . G 4 -21.68 -0.105 -8.206 0.7 41.48 ? C1' ATP 1362 C 1 HETATM 22 N N9 ATP . . . G 4 -22.048 -1.487 -7.981 0.7 41.48 ? N9 ATP 1362 C 1 HETATM 23 C C8 ATP . . . G 4 -23.21 -1.901 -7.437 0.7 41.48 ? C8 ATP 1362 C 1 HETATM 24 N N7 ATP . . . G 4 -23.189 -3.244 -7.383 0.7 41.48 ? N7 ATP 1362 C 1 HETATM 25 C C5 ATP . . . G 4 -22.019 -3.685 -7.892 0.7 41.48 ? C5 ATP 1362 C 1 HETATM 26 C C6 ATP . . . G 4 -21.468 -4.954 -8.081 0.7 41.48 ? C6 ATP 1362 C 1 HETATM 27 N N6 ATP . . . G 4 -22.203 -6.117 -7.692 0.7 41.48 ? N6 ATP 1362 C 1 HETATM 28 N N1 ATP . . . G 4 -20.243 -5.062 -8.629 0.7 41.48 ? N1 ATP 1362 C 1 HETATM 29 C C2 ATP . . . G 4 -19.549 -3.964 -8.993 0.7 41.48 ? C2 ATP 1362 C 1 HETATM 30 N N3 ATP . . . G 4 -20.053 -2.728 -8.823 0.7 41.48 ? N3 ATP 1362 C 1 HETATM 31 C C4 ATP . . . G 4 -21.274 -2.56 -8.279 0.7 41.48 ? C4 ATP 1362 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 724 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #