data_4AU7 # _model_server_result.job_id Y6gR4g9DVKHrXtNl0pCnKw _model_server_result.datetime_utc '2025-08-31 00:53:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4au7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1247}' # _entry.id 4AU7 # _exptl.entry_id 4AU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AU7 _cell.length_a 37.27 _cell.length_b 65.17 _cell.length_c 209.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,X,Z 1 1 B,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ARG 3 C ARG 19 1_555 C N MLY 4 C MLY 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 C C MLY 4 C MLY 20 1_555 C N VAL 5 C VAL 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A ND1 HIS 93 A HIS 92 1_555 F ZN ZN . A ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc2 A SG CYS 96 A CYS 95 1_555 F ZN ZN . A ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 A SG CYS 142 A CYS 141 1_555 F ZN ZN . A ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A SG CYS 186 A CYS 185 1_555 E ZN ZN . A ZN 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A SG CYS 230 A CYS 229 1_555 E ZN ZN . A ZN 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A SG CYS 232 A CYS 231 1_555 E ZN ZN . A ZN 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 A SG CYS 235 A CYS 234 1_555 E ZN ZN . A ZN 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc8 F ZN ZN . A ZN 1249 1_555 X O HOH . A HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 315 n n N HN1 SAH sing 316 n n N HN2 SAH sing 317 n n CA CB SAH sing 318 n n CA C SAH sing 319 n n CA HA SAH sing 320 n n CB CG SAH sing 321 n n CB HB1 SAH sing 322 n n CB HB2 SAH sing 323 n n CG SD SAH sing 324 n n CG HG1 SAH sing 325 n n CG HG2 SAH sing 326 n n SD C5' SAH sing 327 n n C O SAH doub 328 n n C OXT SAH sing 329 n n OXT HXT SAH sing 330 n n C5' C4' SAH sing 331 n n C5' "H5'1" SAH sing 332 n n C5' "H5'2" SAH sing 333 n n C4' O4' SAH sing 334 n n C4' C3' SAH sing 335 n n C4' H4' SAH sing 336 n n O4' C1' SAH sing 337 n n C3' O3' SAH sing 338 n n C3' C2' SAH sing 339 n n C3' H3' SAH sing 340 n n O3' HO3' SAH sing 341 n n C2' O2' SAH sing 342 n n C2' C1' SAH sing 343 n n C2' H2' SAH sing 344 n n O2' HO2' SAH sing 345 n n C1' N9 SAH sing 346 n n C1' H1' SAH sing 347 n n N9 C8 SAH sing 348 n y N9 C4 SAH sing 349 n y C8 N7 SAH doub 350 n y C8 H8 SAH sing 351 n n N7 C5 SAH sing 352 n y C5 C6 SAH sing 353 n y C5 C4 SAH doub 354 n y C6 N6 SAH sing 355 n n C6 N1 SAH doub 356 n y N6 HN61 SAH sing 357 n n N6 HN62 SAH sing 358 n n N1 C2 SAH sing 359 n y C2 N3 SAH doub 360 n y C2 H2 SAH sing 361 n n N3 C4 SAH sing 362 n y # _atom_sites.entry_id 4AU7 _atom_sites.fract_transf_matrix[1][1] 0.026831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SAH A 1 1247 1247 SAH SAH . E 4 ZN A 1 1248 1248 ZN ZN . F 4 ZN A 1 1249 1249 ZN ZN . G 5 EDO A 1 1250 1250 EDO EDO . H 5 EDO A 1 1251 1251 EDO EDO . I 5 EDO A 1 1252 1252 EDO EDO . J 5 EDO A 1 1253 1253 EDO EDO . K 5 EDO A 1 1254 1254 EDO EDO . L 5 EDO A 1 1255 1255 EDO EDO . M 5 EDO A 1 1256 1256 EDO EDO . N 5 EDO A 1 1257 1257 EDO EDO . O 4 ZN B 1 1219 1219 ZN ZN . P 5 EDO B 1 1220 1220 EDO EDO . Q 5 EDO B 1 1221 1221 EDO EDO . R 5 EDO B 1 1222 1222 EDO EDO . S 5 EDO B 1 1223 1223 EDO EDO . T 5 EDO B 1 1224 1224 EDO EDO . U 5 EDO B 1 1225 1225 EDO EDO . V 5 EDO B 1 1226 1226 EDO EDO . W 5 EDO B 1 1227 1227 EDO EDO . X 6 HOH A 1 2001 2001 HOH HOH . X 6 HOH A 2 2002 2002 HOH HOH . X 6 HOH A 3 2003 2003 HOH HOH . X 6 HOH A 4 2004 2004 HOH HOH . X 6 HOH A 5 2005 2005 HOH HOH . X 6 HOH A 6 2006 2006 HOH HOH . X 6 HOH A 7 2007 2007 HOH HOH . X 6 HOH A 8 2008 2008 HOH HOH . X 6 HOH A 9 2009 2009 HOH HOH . X 6 HOH A 10 2010 2010 HOH HOH . X 6 HOH A 11 2011 2011 HOH HOH . X 6 HOH A 12 2012 2012 HOH HOH . X 6 HOH A 13 2013 2013 HOH HOH . X 6 HOH A 14 2014 2014 HOH HOH . X 6 HOH A 15 2015 2015 HOH HOH . X 6 HOH A 16 2016 2016 HOH HOH . X 6 HOH A 17 2017 2017 HOH HOH . X 6 HOH A 18 2018 2018 HOH HOH . X 6 HOH A 19 2019 2019 HOH HOH . X 6 HOH A 20 2020 2020 HOH HOH . X 6 HOH A 21 2021 2021 HOH HOH . X 6 HOH A 22 2022 2022 HOH HOH . X 6 HOH A 23 2023 2023 HOH HOH . X 6 HOH A 24 2024 2024 HOH HOH . X 6 HOH A 25 2025 2025 HOH HOH . X 6 HOH A 26 2026 2026 HOH HOH . X 6 HOH A 27 2027 2027 HOH HOH . X 6 HOH A 28 2028 2028 HOH HOH . X 6 HOH A 29 2029 2029 HOH HOH . X 6 HOH A 30 2030 2030 HOH HOH . X 6 HOH A 31 2031 2031 HOH HOH . X 6 HOH A 32 2032 2032 HOH HOH . X 6 HOH A 33 2033 2033 HOH HOH . X 6 HOH A 34 2034 2034 HOH HOH . X 6 HOH A 35 2035 2035 HOH HOH . X 6 HOH A 36 2036 2036 HOH HOH . X 6 HOH A 37 2037 2037 HOH HOH . X 6 HOH A 38 2038 2038 HOH HOH . X 6 HOH A 39 2039 2039 HOH HOH . X 6 HOH A 40 2040 2040 HOH HOH . X 6 HOH A 41 2041 2041 HOH HOH . X 6 HOH A 42 2042 2042 HOH HOH . X 6 HOH A 43 2043 2043 HOH HOH . X 6 HOH A 44 2044 2044 HOH HOH . X 6 HOH A 45 2045 2045 HOH HOH . X 6 HOH A 46 2046 2046 HOH HOH . X 6 HOH A 47 2047 2047 HOH HOH . X 6 HOH A 48 2048 2048 HOH HOH . X 6 HOH A 49 2049 2049 HOH HOH . X 6 HOH A 50 2050 2050 HOH HOH . X 6 HOH A 51 2051 2051 HOH HOH . X 6 HOH A 52 2052 2052 HOH HOH . X 6 HOH A 53 2053 2053 HOH HOH . X 6 HOH A 54 2054 2054 HOH HOH . X 6 HOH A 55 2055 2055 HOH HOH . X 6 HOH A 56 2056 2056 HOH HOH . X 6 HOH A 57 2057 2057 HOH HOH . X 6 HOH A 58 2058 2058 HOH HOH . X 6 HOH A 59 2059 2059 HOH HOH . X 6 HOH A 60 2060 2060 HOH HOH . X 6 HOH A 61 2061 2061 HOH HOH . X 6 HOH A 62 2062 2062 HOH HOH . X 6 HOH A 63 2063 2063 HOH HOH . X 6 HOH A 64 2064 2064 HOH HOH . X 6 HOH A 65 2065 2065 HOH HOH . X 6 HOH A 66 2066 2066 HOH HOH . X 6 HOH A 67 2067 2067 HOH HOH . X 6 HOH A 68 2068 2068 HOH HOH . X 6 HOH A 69 2069 2069 HOH HOH . X 6 HOH A 70 2070 2070 HOH HOH . X 6 HOH A 71 2071 2071 HOH HOH . X 6 HOH A 72 2072 2072 HOH HOH . X 6 HOH A 73 2073 2073 HOH HOH . X 6 HOH A 74 2074 2074 HOH HOH . X 6 HOH A 75 2075 2075 HOH HOH . X 6 HOH A 76 2076 2076 HOH HOH . X 6 HOH A 77 2077 2077 HOH HOH . X 6 HOH A 78 2078 2078 HOH HOH . X 6 HOH A 79 2079 2079 HOH HOH . X 6 HOH A 80 2080 2080 HOH HOH . X 6 HOH A 81 2081 2081 HOH HOH . X 6 HOH A 82 2082 2082 HOH HOH . X 6 HOH A 83 2083 2083 HOH HOH . X 6 HOH A 84 2084 2084 HOH HOH . X 6 HOH A 85 2085 2085 HOH HOH . X 6 HOH A 86 2086 2086 HOH HOH . X 6 HOH A 87 2087 2087 HOH HOH . X 6 HOH A 88 2088 2088 HOH HOH . X 6 HOH A 89 2089 2089 HOH HOH . X 6 HOH A 90 2090 2090 HOH HOH . X 6 HOH A 91 2091 2091 HOH HOH . X 6 HOH A 92 2092 2092 HOH HOH . X 6 HOH A 93 2093 2093 HOH HOH . X 6 HOH A 94 2094 2094 HOH HOH . X 6 HOH A 95 2095 2095 HOH HOH . X 6 HOH A 96 2096 2096 HOH HOH . Y 6 HOH B 1 2001 2001 HOH HOH . Y 6 HOH B 2 2002 2002 HOH HOH . Y 6 HOH B 3 2003 2003 HOH HOH . Y 6 HOH B 4 2004 2004 HOH HOH . Y 6 HOH B 5 2005 2005 HOH HOH . Y 6 HOH B 6 2006 2006 HOH HOH . Y 6 HOH B 7 2007 2007 HOH HOH . Y 6 HOH B 8 2008 2008 HOH HOH . Y 6 HOH B 9 2009 2009 HOH HOH . Y 6 HOH B 10 2010 2010 HOH HOH . Y 6 HOH B 11 2011 2011 HOH HOH . Y 6 HOH B 12 2012 2012 HOH HOH . Y 6 HOH B 13 2013 2013 HOH HOH . Y 6 HOH B 14 2014 2014 HOH HOH . Y 6 HOH B 15 2015 2015 HOH HOH . Y 6 HOH B 16 2016 2016 HOH HOH . Y 6 HOH B 17 2017 2017 HOH HOH . Y 6 HOH B 18 2018 2018 HOH HOH . Y 6 HOH B 19 2019 2019 HOH HOH . Y 6 HOH B 20 2020 2020 HOH HOH . Y 6 HOH B 21 2021 2021 HOH HOH . Y 6 HOH B 22 2022 2022 HOH HOH . Y 6 HOH B 23 2023 2023 HOH HOH . Y 6 HOH B 24 2024 2024 HOH HOH . Y 6 HOH B 25 2025 2025 HOH HOH . Y 6 HOH B 26 2026 2026 HOH HOH . Y 6 HOH B 27 2027 2027 HOH HOH . Y 6 HOH B 28 2028 2028 HOH HOH . Y 6 HOH B 29 2029 2029 HOH HOH . Y 6 HOH B 30 2030 2030 HOH HOH . Y 6 HOH B 31 2031 2031 HOH HOH . Y 6 HOH B 32 2032 2032 HOH HOH . Y 6 HOH B 33 2033 2033 HOH HOH . Y 6 HOH B 34 2034 2034 HOH HOH . Y 6 HOH B 35 2035 2035 HOH HOH . Y 6 HOH B 36 2036 2036 HOH HOH . Y 6 HOH B 37 2037 2037 HOH HOH . Y 6 HOH B 38 2038 2038 HOH HOH . Y 6 HOH B 39 2039 2039 HOH HOH . Y 6 HOH B 40 2040 2040 HOH HOH . Y 6 HOH B 41 2041 2041 HOH HOH . Y 6 HOH B 42 2042 2042 HOH HOH . Y 6 HOH B 43 2043 2043 HOH HOH . Y 6 HOH B 44 2044 2044 HOH HOH . Y 6 HOH B 45 2045 2045 HOH HOH . Y 6 HOH B 46 2046 2046 HOH HOH . Y 6 HOH B 47 2047 2047 HOH HOH . Y 6 HOH B 48 2048 2048 HOH HOH . Y 6 HOH B 49 2049 2049 HOH HOH . Y 6 HOH B 50 2050 2050 HOH HOH . Z 6 HOH C 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 3 -20.016 -5.811 34.903 1 18.82 ? N SAH 1247 A 1 HETATM 2 C CA SAH . . . D 3 -20.261 -7.241 35.442 1 21.44 ? CA SAH 1247 A 1 HETATM 3 C CB SAH . . . D 3 -18.886 -7.887 35.723 1 20.65 ? CB SAH 1247 A 1 HETATM 4 C CG SAH . . . D 3 -18.455 -8.788 34.628 1 20.75 ? CG SAH 1247 A 1 HETATM 5 S SD SAH . . . D 3 -19.348 -10.292 34.566 1 21.99 ? SD SAH 1247 A 1 HETATM 6 C C SAH . . . D 3 -21.015 -7.307 36.712 1 20.6 ? C SAH 1247 A 1 HETATM 7 O O SAH . . . D 3 -21.207 -6.299 37.473 1 21.03 ? O SAH 1247 A 1 HETATM 8 O OXT SAH . . . D 3 -21.374 -8.452 37.103 1 21.22 ? OXT SAH 1247 A 1 HETATM 9 C C5' SAH . . . D 3 -19.695 -10.463 32.836 1 22.6 ? C5' SAH 1247 A 1 HETATM 10 C C4' SAH . . . D 3 -21.003 -9.744 32.473 1 23.46 ? C4' SAH 1247 A 1 HETATM 11 O O4' SAH . . . D 3 -20.821 -8.311 32.447 1 22.86 ? O4' SAH 1247 A 1 HETATM 12 C C3' SAH . . . D 3 -21.487 -10.151 31.058 1 25.81 ? C3' SAH 1247 A 1 HETATM 13 O O3' SAH . . . D 3 -22.319 -11.328 31.052 1 26.35 ? O3' SAH 1247 A 1 HETATM 14 C C2' SAH . . . D 3 -22.225 -8.936 30.591 1 24.77 ? C2' SAH 1247 A 1 HETATM 15 O O2' SAH . . . D 3 -23.463 -8.944 31.277 1 26.23 ? O2' SAH 1247 A 1 HETATM 16 C C1' SAH . . . D 3 -21.402 -7.815 31.201 1 22.42 ? C1' SAH 1247 A 1 HETATM 17 N N9 SAH . . . D 3 -20.332 -7.388 30.285 1 25.65 ? N9 SAH 1247 A 1 HETATM 18 C C8 SAH . . . D 3 -18.997 -7.384 30.542 1 20.73 ? C8 SAH 1247 A 1 HETATM 19 N N7 SAH . . . D 3 -18.376 -6.976 29.469 1 21.21 ? N7 SAH 1247 A 1 HETATM 20 C C5 SAH . . . D 3 -19.303 -6.668 28.501 1 22.3 ? C5 SAH 1247 A 1 HETATM 21 C C6 SAH . . . D 3 -19.326 -6.144 27.125 1 24.02 ? C6 SAH 1247 A 1 HETATM 22 N N6 SAH . . . D 3 -18.185 -5.856 26.47 1 21.67 ? N6 SAH 1247 A 1 HETATM 23 N N1 SAH . . . D 3 -20.529 -5.997 26.471 1 26.95 ? N1 SAH 1247 A 1 HETATM 24 C C2 SAH . . . D 3 -21.683 -6.283 27.052 1 25.41 ? C2 SAH 1247 A 1 HETATM 25 N N3 SAH . . . D 3 -21.721 -6.722 28.339 1 27.67 ? N3 SAH 1247 A 1 HETATM 26 C C4 SAH . . . D 3 -20.594 -6.917 29.07 1 24.39 ? C4 SAH 1247 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #