data_4AVE # _model_server_result.job_id 6l9lvYHA-nlyna7E989HEw _model_server_result.datetime_utc '2024-10-14 05:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ave # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":144}' # _entry.id 4AVE # _exptl.entry_id 4AVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AVE _cell.length_a 42.14 _cell.length_b 44.33 _cell.length_c 62.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 70 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 144 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.21 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 148 n n CHA C4D HEM doub 149 n n CHA HHA HEM sing 150 n n CHB C4A HEM sing 151 n n CHB C1B HEM doub 152 n n CHB HHB HEM sing 153 n n CHC C4B HEM sing 154 n n CHC C1C HEM doub 155 n n CHC HHC HEM sing 156 n n CHD C4C HEM doub 157 n n CHD C1D HEM sing 158 n n CHD HHD HEM sing 159 n n C1A C2A HEM doub 160 n y C1A NA HEM sing 161 n y C2A C3A HEM sing 162 n y C2A CAA HEM sing 163 n n C3A C4A HEM doub 164 n y C3A CMA HEM sing 165 n n C4A NA HEM sing 166 n y CMA HMA HEM sing 167 n n CMA HMAA HEM sing 168 n n CMA HMAB HEM sing 169 n n CAA CBA HEM sing 170 n n CAA HAA HEM sing 171 n n CAA HAAA HEM sing 172 n n CBA CGA HEM sing 173 n n CBA HBA HEM sing 174 n n CBA HBAA HEM sing 175 n n CGA O1A HEM doub 176 n n CGA O2A HEM sing 177 n n C1B C2B HEM sing 178 n n C1B NB HEM sing 179 n n C2B C3B HEM doub 180 n n C2B CMB HEM sing 181 n n C3B C4B HEM sing 182 n n C3B CAB HEM sing 183 n n C4B NB HEM doub 184 n n CMB HMB HEM sing 185 n n CMB HMBA HEM sing 186 n n CMB HMBB HEM sing 187 n n CAB CBB HEM doub 188 n n CAB HAB HEM sing 189 n n CBB HBB HEM sing 190 n n CBB HBBA HEM sing 191 n n C1C C2C HEM sing 192 n y C1C NC HEM sing 193 n y C2C C3C HEM doub 194 n y C2C CMC HEM sing 195 n n C3C C4C HEM sing 196 n y C3C CAC HEM sing 197 n n C4C NC HEM sing 198 n y CMC HMC HEM sing 199 n n CMC HMCA HEM sing 200 n n CMC HMCB HEM sing 201 n n CAC CBC HEM doub 202 n n CAC HAC HEM sing 203 n n CBC HBC HEM sing 204 n n CBC HBCA HEM sing 205 n n C1D C2D HEM sing 206 n n C1D ND HEM doub 207 n n C2D C3D HEM doub 208 n n C2D CMD HEM sing 209 n n C3D C4D HEM sing 210 n n C3D CAD HEM sing 211 n n C4D ND HEM sing 212 n n CMD HMD HEM sing 213 n n CMD HMDA HEM sing 214 n n CMD HMDB HEM sing 215 n n CAD CBD HEM sing 216 n n CAD HAD HEM sing 217 n n CAD HADA HEM sing 218 n n CBD CGD HEM sing 219 n n CBD HBD HEM sing 220 n n CBD HBDA HEM sing 221 n n CGD O1D HEM doub 222 n n CGD O2D HEM sing 223 n n O2A H2A HEM sing 224 n n O2D H2D HEM sing 225 n n FE NA HEM sing 226 n n FE NB HEM sing 227 n n FE NC HEM sing 228 n n FE ND HEM sing 229 n n # _atom_sites.entry_id 4AVE _atom_sites.fract_transf_matrix[1][1] 0.02373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 144 144 HEM HEM . C 3 GOL A 1 1111 1111 GOL GOL . D 4 SO4 A 1 1112 1112 SO4 SO4 . E 4 SO4 A 1 1113 1113 SO4 SO4 . F 5 ACT A 1 1114 1114 ACT ACT . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . G 6 HOH A 84 2084 2084 HOH HOH . G 6 HOH A 85 2085 2085 HOH HOH . G 6 HOH A 86 2086 2086 HOH HOH . G 6 HOH A 87 2087 2087 HOH HOH . G 6 HOH A 88 2088 2088 HOH HOH . G 6 HOH A 89 2089 2089 HOH HOH . G 6 HOH A 90 2090 2090 HOH HOH . G 6 HOH A 91 2091 2091 HOH HOH . G 6 HOH A 92 2092 2092 HOH HOH . G 6 HOH A 93 2093 2093 HOH HOH . G 6 HOH A 94 2094 2094 HOH HOH . G 6 HOH A 95 2095 2095 HOH HOH . G 6 HOH A 96 2096 2096 HOH HOH . G 6 HOH A 97 2097 2097 HOH HOH . G 6 HOH A 98 2098 2098 HOH HOH . G 6 HOH A 99 2099 2099 HOH HOH . G 6 HOH A 100 2100 2100 HOH HOH . G 6 HOH A 101 2101 2101 HOH HOH . G 6 HOH A 102 2102 2102 HOH HOH . G 6 HOH A 103 2103 2103 HOH HOH . G 6 HOH A 104 2104 2104 HOH HOH . G 6 HOH A 105 2105 2105 HOH HOH . G 6 HOH A 106 2106 2106 HOH HOH . G 6 HOH A 107 2107 2107 HOH HOH . G 6 HOH A 108 2108 2108 HOH HOH . G 6 HOH A 109 2109 2109 HOH HOH . G 6 HOH A 110 2110 2110 HOH HOH . G 6 HOH A 111 2111 2111 HOH HOH . G 6 HOH A 112 2112 2112 HOH HOH . G 6 HOH A 113 2113 2113 HOH HOH . G 6 HOH A 114 2114 2114 HOH HOH . G 6 HOH A 115 2115 2115 HOH HOH . G 6 HOH A 116 2116 2116 HOH HOH . G 6 HOH A 117 2117 2117 HOH HOH . G 6 HOH A 118 2118 2118 HOH HOH . G 6 HOH A 119 2119 2119 HOH HOH . G 6 HOH A 120 2120 2120 HOH HOH . G 6 HOH A 121 2121 2121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 17.629 12.388 9.087 1 12.06 ? CHA HEM 144 A 1 HETATM 2 C CHB HEM . . . B 2 15.587 9.364 12.306 1 9.5 ? CHB HEM 144 A 1 HETATM 3 C CHC HEM . . . B 2 11.323 11.595 11.481 1 10.34 ? CHC HEM 144 A 1 HETATM 4 C CHD HEM . . . B 2 13.295 14.564 8.218 1 9.29 ? CHD HEM 144 A 1 HETATM 5 C C1A HEM . . . B 2 17.463 11.369 10.019 1 9.68 ? C1A HEM 144 A 1 HETATM 6 C C2A HEM . . . B 2 18.508 10.504 10.543 1 8.89 ? C2A HEM 144 A 1 HETATM 7 C C3A HEM . . . B 2 17.941 9.665 11.435 1 8.84 ? C3A HEM 144 A 1 HETATM 8 C C4A HEM . . . B 2 16.527 9.978 11.505 1 8.16 ? C4A HEM 144 A 1 HETATM 9 C CMA HEM . . . B 2 18.607 8.523 12.239 1 10.21 ? CMA HEM 144 A 1 HETATM 10 C CAA HEM . . . B 2 19.991 10.552 10.096 1 10.77 ? CAA HEM 144 A 1 HETATM 11 C CBA HEM . . . B 2 20.736 11.573 10.971 1 13.23 ? CBA HEM 144 A 1 HETATM 12 C CGA HEM . . . B 2 22.23 11.605 10.689 1 16.31 ? CGA HEM 144 A 1 HETATM 13 O O1A HEM . . . B 2 22.667 11.205 9.578 1 18.96 ? O1A HEM 144 A 1 HETATM 14 O O2A HEM . . . B 2 23.01 12.07 11.564 1 16.22 ? O2A HEM 144 A 1 HETATM 15 C C1B HEM . . . B 2 14.237 9.673 12.368 1 10.41 ? C1B HEM 144 A 1 HETATM 16 C C2B HEM . . . B 2 13.226 9.025 13.203 1 10.66 ? C2B HEM 144 A 1 HETATM 17 C C3B HEM . . . B 2 12.052 9.655 12.966 1 11.42 ? C3B HEM 144 A 1 HETATM 18 C C4B HEM . . . B 2 12.284 10.72 11.988 1 10.5 ? C4B HEM 144 A 1 HETATM 19 C CMB HEM . . . B 2 13.466 7.829 14.169 1 11.54 ? CMB HEM 144 A 1 HETATM 20 C CAB HEM . . . B 2 10.669 9.348 13.612 1 11.18 ? CAB HEM 144 A 1 HETATM 21 C CBB HEM . . . B 2 10.201 8.101 13.716 1 16.53 ? CBB HEM 144 A 1 HETATM 22 C C1C HEM . . . B 2 11.463 12.583 10.522 1 10.24 ? C1C HEM 144 A 1 HETATM 23 C C2C HEM . . . B 2 10.397 13.422 9.985 1 10.2 ? C2C HEM 144 A 1 HETATM 24 C C3C HEM . . . B 2 10.936 14.23 9.07 1 10.18 ? C3C HEM 144 A 1 HETATM 25 C C4C HEM . . . B 2 12.361 13.956 9.014 1 8.43 ? C4C HEM 144 A 1 HETATM 26 C CMC HEM . . . B 2 8.892 13.347 10.414 1 11.93 ? CMC HEM 144 A 1 HETATM 27 C CAC HEM . . . B 2 10.17 15.312 8.262 1 13.84 ? CAC HEM 144 A 1 HETATM 28 C CBC HEM . . . B 2 10.513 15.678 7.021 1 16.01 ? CBC HEM 144 A 1 HETATM 29 C C1D HEM . . . B 2 14.639 14.233 8.113 1 9.25 ? C1D HEM 144 A 1 HETATM 30 C C2D HEM . . . B 2 15.557 14.821 7.165 1 7.56 ? C2D HEM 144 A 1 HETATM 31 C C3D HEM . . . B 2 16.893 14.164 7.436 1 10.5 ? C3D HEM 144 A 1 HETATM 32 C C4D HEM . . . B 2 16.661 13.209 8.521 1 11.54 ? C4D HEM 144 A 1 HETATM 33 C CMD HEM . . . B 2 15.257 15.908 6.103 1 8.29 ? CMD HEM 144 A 1 HETATM 34 C CAD HEM . . . B 2 18.199 14.458 6.659 1 11.32 ? CAD HEM 144 A 1 HETATM 35 C CBD HEM . . . B 2 18.197 13.53 5.452 1 14.03 ? CBD HEM 144 A 1 HETATM 36 C CGD HEM . . . B 2 19.395 13.796 4.564 1 17.89 ? CGD HEM 144 A 1 HETATM 37 O O1D HEM . . . B 2 19.221 13.924 3.333 1 19.83 ? O1D HEM 144 A 1 HETATM 38 O O2D HEM . . . B 2 20.533 13.877 5.078 1 17.92 ? O2D HEM 144 A 1 HETATM 39 N NA HEM . . . B 2 16.287 11.052 10.67 1 7.81 ? NA HEM 144 A 1 HETATM 40 N NB HEM . . . B 2 13.622 10.705 11.667 1 9.79 ? NB HEM 144 A 1 HETATM 41 N NC HEM . . . B 2 12.653 12.945 9.904 1 9.22 ? NC HEM 144 A 1 HETATM 42 N ND HEM . . . B 2 15.317 13.298 8.905 1 9.58 ? ND HEM 144 A 1 HETATM 43 FE FE HEM . . . B 2 14.469 12.054 10.335 1 9.62 ? FE HEM 144 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #