data_4AVG # _model_server_result.job_id UAG6JtXcCJgCqbW5AGKT0w _model_server_result.datetime_utc '2024-11-25 08:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4avg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":902}' # _entry.id 4AVG # _exptl.entry_id 4AVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AVG _cell.length_a 56.59 _cell.length_b 120.81 _cell.length_c 128.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O28 SL6 . A SL6 801 1_555 F MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 E O26 SL6 . A SL6 801 1_555 F MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc3 E O27 SL6 . A SL6 801 1_555 G MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 E O28 SL6 . A SL6 801 1_555 G MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 H O28 SL6 . B SL6 801 1_555 I MN MN . B MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 H O26 SL6 . B SL6 801 1_555 I MN MN . B MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 H O27 SL6 . B SL6 801 1_555 J MN MN . B MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 H O28 SL6 . B SL6 801 1_555 J MN MN . B MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 K O28 SL6 . C SL6 801 1_555 L MN MN . C MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc10 K O26 SL6 . C SL6 801 1_555 L MN MN . C MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc11 K O28 SL6 . C SL6 801 1_555 M MN MN . C MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc12 K O27 SL6 . C SL6 801 1_555 M MN MN . C MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc13 N O28 SL6 . D SL6 801 1_555 O MN MN . D MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc14 N O26 SL6 . D SL6 801 1_555 O MN MN . D MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc15 N O28 SL6 . D SL6 801 1_555 P MN MN . D MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 N O27 SL6 . D SL6 801 1_555 P MN MN . D MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4AVG _atom_sites.fract_transf_matrix[1][1] 0.017671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SL6 A 1 801 801 SL6 SL6 . F 3 MN A 1 901 901 MN MN . G 3 MN A 1 902 902 MN MN . H 2 SL6 B 1 801 801 SL6 SL6 . I 3 MN B 1 901 901 MN MN . J 3 MN B 1 902 902 MN MN . K 2 SL6 C 1 801 801 SL6 SL6 . L 3 MN C 1 901 901 MN MN . M 3 MN C 1 902 902 MN MN . N 2 SL6 D 1 801 801 SL6 SL6 . O 3 MN D 1 901 901 MN MN . P 3 MN D 1 902 902 MN MN . Q 4 HOH A 1 2001 2001 HOH HOH . Q 4 HOH A 2 2002 2002 HOH HOH . Q 4 HOH A 3 2003 2003 HOH HOH . Q 4 HOH A 4 2004 2004 HOH HOH . Q 4 HOH A 5 2005 2005 HOH HOH . Q 4 HOH A 6 2006 2006 HOH HOH . Q 4 HOH A 7 2007 2007 HOH HOH . Q 4 HOH A 8 2008 2008 HOH HOH . Q 4 HOH A 9 2009 2009 HOH HOH . Q 4 HOH A 10 2010 2010 HOH HOH . Q 4 HOH A 11 2011 2011 HOH HOH . Q 4 HOH A 12 2012 2012 HOH HOH . Q 4 HOH A 13 2013 2013 HOH HOH . Q 4 HOH A 14 2014 2014 HOH HOH . Q 4 HOH A 15 2015 2015 HOH HOH . Q 4 HOH A 16 2016 2016 HOH HOH . Q 4 HOH A 17 2017 2017 HOH HOH . Q 4 HOH A 18 2018 2018 HOH HOH . Q 4 HOH A 19 2019 2019 HOH HOH . Q 4 HOH A 20 2020 2020 HOH HOH . Q 4 HOH A 21 2021 2021 HOH HOH . Q 4 HOH A 22 2022 2022 HOH HOH . Q 4 HOH A 23 2023 2023 HOH HOH . Q 4 HOH A 24 2024 2024 HOH HOH . Q 4 HOH A 25 2025 2025 HOH HOH . Q 4 HOH A 26 2026 2026 HOH HOH . Q 4 HOH A 27 2027 2027 HOH HOH . Q 4 HOH A 28 2028 2028 HOH HOH . Q 4 HOH A 29 2029 2029 HOH HOH . Q 4 HOH A 30 2030 2030 HOH HOH . Q 4 HOH A 31 2031 2031 HOH HOH . Q 4 HOH A 32 2032 2032 HOH HOH . Q 4 HOH A 33 2033 2033 HOH HOH . Q 4 HOH A 34 2034 2034 HOH HOH . Q 4 HOH A 35 2035 2035 HOH HOH . Q 4 HOH A 36 2036 2036 HOH HOH . Q 4 HOH A 37 2037 2037 HOH HOH . Q 4 HOH A 38 2038 2038 HOH HOH . Q 4 HOH A 39 2039 2039 HOH HOH . Q 4 HOH A 40 2040 2040 HOH HOH . Q 4 HOH A 41 2041 2041 HOH HOH . Q 4 HOH A 42 2042 2042 HOH HOH . Q 4 HOH A 43 2043 2043 HOH HOH . Q 4 HOH A 44 2044 2044 HOH HOH . Q 4 HOH A 45 2045 2045 HOH HOH . Q 4 HOH A 46 2046 2046 HOH HOH . Q 4 HOH A 47 2047 2047 HOH HOH . Q 4 HOH A 48 2048 2048 HOH HOH . Q 4 HOH A 49 2049 2049 HOH HOH . Q 4 HOH A 50 2050 2050 HOH HOH . Q 4 HOH A 51 2051 2051 HOH HOH . Q 4 HOH A 52 2052 2052 HOH HOH . Q 4 HOH A 53 2053 2053 HOH HOH . Q 4 HOH A 54 2054 2054 HOH HOH . Q 4 HOH A 55 2055 2055 HOH HOH . Q 4 HOH A 56 2056 2056 HOH HOH . R 4 HOH B 1 2001 2001 HOH HOH . R 4 HOH B 2 2002 2002 HOH HOH . R 4 HOH B 3 2003 2003 HOH HOH . R 4 HOH B 4 2004 2004 HOH HOH . R 4 HOH B 5 2005 2005 HOH HOH . R 4 HOH B 6 2006 2006 HOH HOH . R 4 HOH B 7 2007 2007 HOH HOH . R 4 HOH B 8 2008 2008 HOH HOH . R 4 HOH B 9 2009 2009 HOH HOH . R 4 HOH B 10 2010 2010 HOH HOH . R 4 HOH B 11 2011 2011 HOH HOH . R 4 HOH B 12 2012 2012 HOH HOH . R 4 HOH B 13 2013 2013 HOH HOH . R 4 HOH B 14 2014 2014 HOH HOH . R 4 HOH B 15 2015 2015 HOH HOH . R 4 HOH B 16 2016 2016 HOH HOH . R 4 HOH B 17 2017 2017 HOH HOH . R 4 HOH B 18 2018 2018 HOH HOH . R 4 HOH B 19 2019 2019 HOH HOH . R 4 HOH B 20 2020 2020 HOH HOH . R 4 HOH B 21 2021 2021 HOH HOH . R 4 HOH B 22 2022 2022 HOH HOH . R 4 HOH B 23 2023 2023 HOH HOH . R 4 HOH B 24 2024 2024 HOH HOH . R 4 HOH B 25 2025 2025 HOH HOH . R 4 HOH B 26 2026 2026 HOH HOH . R 4 HOH B 27 2027 2027 HOH HOH . R 4 HOH B 28 2028 2028 HOH HOH . R 4 HOH B 29 2029 2029 HOH HOH . R 4 HOH B 30 2030 2030 HOH HOH . R 4 HOH B 31 2031 2031 HOH HOH . R 4 HOH B 32 2032 2032 HOH HOH . R 4 HOH B 33 2033 2033 HOH HOH . R 4 HOH B 34 2034 2034 HOH HOH . R 4 HOH B 35 2035 2035 HOH HOH . R 4 HOH B 36 2036 2036 HOH HOH . R 4 HOH B 37 2037 2037 HOH HOH . R 4 HOH B 38 2038 2038 HOH HOH . R 4 HOH B 39 2039 2039 HOH HOH . R 4 HOH B 40 2040 2040 HOH HOH . R 4 HOH B 41 2041 2041 HOH HOH . R 4 HOH B 42 2042 2042 HOH HOH . R 4 HOH B 43 2043 2043 HOH HOH . R 4 HOH B 44 2044 2044 HOH HOH . R 4 HOH B 45 2045 2045 HOH HOH . R 4 HOH B 46 2046 2046 HOH HOH . R 4 HOH B 47 2047 2047 HOH HOH . R 4 HOH B 48 2048 2048 HOH HOH . R 4 HOH B 49 2049 2049 HOH HOH . S 4 HOH C 1 2001 2001 HOH HOH . S 4 HOH C 2 2002 2002 HOH HOH . S 4 HOH C 3 2003 2003 HOH HOH . S 4 HOH C 4 2004 2004 HOH HOH . S 4 HOH C 5 2005 2005 HOH HOH . S 4 HOH C 6 2006 2006 HOH HOH . S 4 HOH C 7 2007 2007 HOH HOH . S 4 HOH C 8 2008 2008 HOH HOH . S 4 HOH C 9 2009 2009 HOH HOH . S 4 HOH C 10 2010 2010 HOH HOH . S 4 HOH C 11 2011 2011 HOH HOH . S 4 HOH C 12 2012 2012 HOH HOH . S 4 HOH C 13 2013 2013 HOH HOH . S 4 HOH C 14 2014 2014 HOH HOH . S 4 HOH C 15 2015 2015 HOH HOH . S 4 HOH C 16 2016 2016 HOH HOH . S 4 HOH C 17 2017 2017 HOH HOH . S 4 HOH C 18 2018 2018 HOH HOH . S 4 HOH C 19 2019 2019 HOH HOH . S 4 HOH C 20 2020 2020 HOH HOH . S 4 HOH C 21 2021 2021 HOH HOH . S 4 HOH C 22 2022 2022 HOH HOH . S 4 HOH C 23 2023 2023 HOH HOH . S 4 HOH C 24 2024 2024 HOH HOH . S 4 HOH C 25 2025 2025 HOH HOH . S 4 HOH C 26 2026 2026 HOH HOH . S 4 HOH C 27 2027 2027 HOH HOH . S 4 HOH C 28 2028 2028 HOH HOH . S 4 HOH C 29 2029 2029 HOH HOH . S 4 HOH C 30 2030 2030 HOH HOH . S 4 HOH C 31 2031 2031 HOH HOH . S 4 HOH C 32 2032 2032 HOH HOH . S 4 HOH C 33 2033 2033 HOH HOH . S 4 HOH C 34 2034 2034 HOH HOH . S 4 HOH C 35 2035 2035 HOH HOH . S 4 HOH C 36 2036 2036 HOH HOH . S 4 HOH C 37 2037 2037 HOH HOH . S 4 HOH C 38 2038 2038 HOH HOH . T 4 HOH D 1 2001 2001 HOH HOH . T 4 HOH D 2 2002 2002 HOH HOH . T 4 HOH D 3 2003 2003 HOH HOH . T 4 HOH D 4 2004 2004 HOH HOH . T 4 HOH D 5 2005 2005 HOH HOH . T 4 HOH D 6 2006 2006 HOH HOH . T 4 HOH D 7 2007 2007 HOH HOH . T 4 HOH D 8 2008 2008 HOH HOH . T 4 HOH D 9 2009 2009 HOH HOH . T 4 HOH D 10 2010 2010 HOH HOH . T 4 HOH D 11 2011 2011 HOH HOH . T 4 HOH D 12 2012 2012 HOH HOH . T 4 HOH D 13 2013 2013 HOH HOH . T 4 HOH D 14 2014 2014 HOH HOH . T 4 HOH D 15 2015 2015 HOH HOH . T 4 HOH D 16 2016 2016 HOH HOH . T 4 HOH D 17 2017 2017 HOH HOH . T 4 HOH D 18 2018 2018 HOH HOH . T 4 HOH D 19 2019 2019 HOH HOH . T 4 HOH D 20 2020 2020 HOH HOH . T 4 HOH D 21 2021 2021 HOH HOH . T 4 HOH D 22 2022 2022 HOH HOH . T 4 HOH D 23 2023 2023 HOH HOH . T 4 HOH D 24 2024 2024 HOH HOH . T 4 HOH D 25 2025 2025 HOH HOH . T 4 HOH D 26 2026 2026 HOH HOH . T 4 HOH D 27 2027 2027 HOH HOH . T 4 HOH D 28 2028 2028 HOH HOH . T 4 HOH D 29 2029 2029 HOH HOH . T 4 HOH D 30 2030 2030 HOH HOH . T 4 HOH D 31 2031 2031 HOH HOH . T 4 HOH D 32 2032 2032 HOH HOH . T 4 HOH D 33 2033 2033 HOH HOH . T 4 HOH D 34 2034 2034 HOH HOH . T 4 HOH D 35 2035 2035 HOH HOH . T 4 HOH D 36 2036 2036 HOH HOH . T 4 HOH D 37 2037 2037 HOH HOH . T 4 HOH D 38 2038 2038 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.633 _atom_site.Cartn_y -19.361 _atom_site.Cartn_z -11.475 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #