data_4AVU
#
_model_server_result.job_id            6-jjRa7eKBBTy_GbjwJLhA 
_model_server_result.datetime_utc      '2024-10-19 08:32:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4avu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2165}' 
#
_entry.id    4AVU 
#
_exptl.entry_id    4AVU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.217 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            phenanthridin-6(5H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AVU 
_cell.length_a            93.37 
_cell.length_b            96.69 
_cell.length_c            116.33 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AVU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc5 B SG CYS 159 B CYS 1081 1_555 H ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 B ND1 HIS 162 B HIS 1084 1_555 H ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc7 B SG CYS 167 B CYS 1089 1_555 H ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc8 B SG CYS 170 B CYS 1092 1_555 H ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
#
_chem_comp.formula           'C13 H9 N O' 
_chem_comp.formula_weight    195.217 
_chem_comp.id                LDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              phenanthridin-6(5H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAK OAA LDR doub 186 n n 
CAD CAB LDR doub 187 n y 
CAB CAF LDR sing 188 n y 
CAB HAB LDR sing 189 n n 
CAE CAC LDR doub 190 n y 
CAC CAG LDR sing 191 n y 
CAC HAC LDR sing 192 n n 
CAD CAH LDR sing 193 n y 
CAD HAD LDR sing 194 n n 
CAI CAE LDR sing 195 n y 
CAE HAE LDR sing 196 n n 
CAF CAL LDR doub 197 n y 
CAF HAF LDR sing 198 n n 
CAM CAG LDR doub 199 n y 
CAG HAG LDR sing 200 n n 
CAH CAN LDR doub 201 n y 
CAH HAH LDR sing 202 n n 
CAI CAO LDR doub 203 n y 
CAI HAI LDR sing 204 n n 
CAL NAJ LDR sing 205 n n 
NAJ CAK LDR sing 206 n n 
NAJ HNAJ LDR sing 207 n n 
CAM CAK LDR sing 208 n n 
CAN CAL LDR sing 209 n y 
CAO CAM LDR sing 210 n y 
CAN CAO LDR sing 211 n n 
#
_atom_sites.entry_id                     4AVU 
_atom_sites.fract_transf_matrix[1][1]    0.01071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010342 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008596 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 2162 2162 ZN ZN . 
D 3 SO4 A 1 2163 2163 SO4 SO4 . 
E 3 SO4 A 1 2164 2164 SO4 SO4 . 
F 4 LDR A 1 2165 2165 LDR LDR . 
G 5 PEG A 1 2166 2166 PEG PEG . 
H 2 ZN B 1 2162 2162 ZN ZN . 
I 3 SO4 B 1 2163 2163 SO4 SO4 . 
J 3 SO4 B 1 2164 2164 SO4 SO4 . 
K 4 LDR B 1 2165 2165 LDR LDR . 
L 5 PEG B 1 2166 2166 PEG PEG . 
M 6 GOL B 1 2167 2167 GOL GOL . 
N 6 GOL B 1 2168 2168 GOL GOL . 
O 7 HOH A 1 2001 2001 HOH HOH . 
O 7 HOH A 2 2002 2002 HOH HOH . 
O 7 HOH A 3 2003 2003 HOH HOH . 
O 7 HOH A 4 2004 2004 HOH HOH . 
O 7 HOH A 5 2005 2005 HOH HOH . 
O 7 HOH A 6 2006 2006 HOH HOH . 
O 7 HOH A 7 2007 2007 HOH HOH . 
O 7 HOH A 8 2008 2008 HOH HOH . 
O 7 HOH A 9 2009 2009 HOH HOH . 
O 7 HOH A 10 2010 2010 HOH HOH . 
O 7 HOH A 11 2011 2011 HOH HOH . 
O 7 HOH A 12 2012 2012 HOH HOH . 
O 7 HOH A 13 2013 2013 HOH HOH . 
O 7 HOH A 14 2014 2014 HOH HOH . 
O 7 HOH A 15 2015 2015 HOH HOH . 
O 7 HOH A 16 2016 2016 HOH HOH . 
O 7 HOH A 17 2017 2017 HOH HOH . 
O 7 HOH A 18 2018 2018 HOH HOH . 
O 7 HOH A 19 2019 2019 HOH HOH . 
O 7 HOH A 20 2020 2020 HOH HOH . 
O 7 HOH A 21 2021 2021 HOH HOH . 
O 7 HOH A 22 2022 2022 HOH HOH . 
O 7 HOH A 23 2023 2023 HOH HOH . 
O 7 HOH A 24 2024 2024 HOH HOH . 
O 7 HOH A 25 2025 2025 HOH HOH . 
O 7 HOH A 26 2026 2026 HOH HOH . 
O 7 HOH A 27 2027 2027 HOH HOH . 
O 7 HOH A 28 2028 2028 HOH HOH . 
O 7 HOH A 29 2029 2029 HOH HOH . 
O 7 HOH A 30 2030 2030 HOH HOH . 
O 7 HOH A 31 2031 2031 HOH HOH . 
O 7 HOH A 32 2032 2032 HOH HOH . 
O 7 HOH A 33 2033 2033 HOH HOH . 
O 7 HOH A 34 2034 2034 HOH HOH . 
O 7 HOH A 35 2035 2035 HOH HOH . 
O 7 HOH A 36 2036 2036 HOH HOH . 
O 7 HOH A 37 2037 2037 HOH HOH . 
O 7 HOH A 38 2038 2038 HOH HOH . 
O 7 HOH A 39 2039 2039 HOH HOH . 
O 7 HOH A 40 2040 2040 HOH HOH . 
O 7 HOH A 41 2041 2041 HOH HOH . 
O 7 HOH A 42 2042 2042 HOH HOH . 
O 7 HOH A 43 2043 2043 HOH HOH . 
O 7 HOH A 44 2044 2044 HOH HOH . 
O 7 HOH A 45 2045 2045 HOH HOH . 
O 7 HOH A 46 2046 2046 HOH HOH . 
O 7 HOH A 47 2047 2047 HOH HOH . 
O 7 HOH A 48 2048 2048 HOH HOH . 
O 7 HOH A 49 2049 2049 HOH HOH . 
O 7 HOH A 50 2050 2050 HOH HOH . 
O 7 HOH A 51 2051 2051 HOH HOH . 
O 7 HOH A 52 2052 2052 HOH HOH . 
O 7 HOH A 53 2053 2053 HOH HOH . 
O 7 HOH A 54 2054 2054 HOH HOH . 
O 7 HOH A 55 2055 2055 HOH HOH . 
O 7 HOH A 56 2056 2056 HOH HOH . 
O 7 HOH A 57 2057 2057 HOH HOH . 
O 7 HOH A 58 2058 2058 HOH HOH . 
O 7 HOH A 59 2059 2059 HOH HOH . 
O 7 HOH A 60 2060 2060 HOH HOH . 
O 7 HOH A 61 2061 2061 HOH HOH . 
O 7 HOH A 62 2062 2062 HOH HOH . 
O 7 HOH A 63 2063 2063 HOH HOH . 
O 7 HOH A 64 2064 2064 HOH HOH . 
O 7 HOH A 65 2065 2065 HOH HOH . 
O 7 HOH A 66 2066 2066 HOH HOH . 
P 7 HOH B 1 2001 2001 HOH HOH . 
P 7 HOH B 2 2002 2002 HOH HOH . 
P 7 HOH B 3 2003 2003 HOH HOH . 
P 7 HOH B 4 2004 2004 HOH HOH . 
P 7 HOH B 5 2005 2005 HOH HOH . 
P 7 HOH B 6 2006 2006 HOH HOH . 
P 7 HOH B 7 2007 2007 HOH HOH . 
P 7 HOH B 8 2008 2008 HOH HOH . 
P 7 HOH B 9 2009 2009 HOH HOH . 
P 7 HOH B 10 2010 2010 HOH HOH . 
P 7 HOH B 11 2011 2011 HOH HOH . 
P 7 HOH B 12 2012 2012 HOH HOH . 
P 7 HOH B 13 2013 2013 HOH HOH . 
P 7 HOH B 14 2014 2014 HOH HOH . 
P 7 HOH B 15 2015 2015 HOH HOH . 
P 7 HOH B 16 2016 2016 HOH HOH . 
P 7 HOH B 17 2017 2017 HOH HOH . 
P 7 HOH B 18 2018 2018 HOH HOH . 
P 7 HOH B 19 2019 2019 HOH HOH . 
P 7 HOH B 20 2020 2020 HOH HOH . 
P 7 HOH B 21 2021 2021 HOH HOH . 
P 7 HOH B 22 2022 2022 HOH HOH . 
P 7 HOH B 23 2023 2023 HOH HOH . 
P 7 HOH B 24 2024 2024 HOH HOH . 
P 7 HOH B 25 2025 2025 HOH HOH . 
P 7 HOH B 26 2026 2026 HOH HOH . 
P 7 HOH B 27 2027 2027 HOH HOH . 
P 7 HOH B 28 2028 2028 HOH HOH . 
P 7 HOH B 29 2029 2029 HOH HOH . 
P 7 HOH B 30 2030 2030 HOH HOH . 
P 7 HOH B 31 2031 2031 HOH HOH . 
P 7 HOH B 32 2032 2032 HOH HOH . 
P 7 HOH B 33 2033 2033 HOH HOH . 
P 7 HOH B 34 2034 2034 HOH HOH . 
P 7 HOH B 35 2035 2035 HOH HOH . 
P 7 HOH B 36 2036 2036 HOH HOH . 
P 7 HOH B 37 2037 2037 HOH HOH . 
P 7 HOH B 38 2038 2038 HOH HOH . 
P 7 HOH B 39 2039 2039 HOH HOH . 
P 7 HOH B 40 2040 2040 HOH HOH . 
P 7 HOH B 41 2041 2041 HOH HOH . 
P 7 HOH B 42 2042 2042 HOH HOH . 
P 7 HOH B 43 2043 2043 HOH HOH . 
P 7 HOH B 44 2044 2044 HOH HOH . 
P 7 HOH B 45 2045 2045 HOH HOH . 
P 7 HOH B 46 2046 2046 HOH HOH . 
P 7 HOH B 47 2047 2047 HOH HOH . 
P 7 HOH B 48 2048 2048 HOH HOH . 
P 7 HOH B 49 2049 2049 HOH HOH . 
P 7 HOH B 50 2050 2050 HOH HOH . 
P 7 HOH B 51 2051 2051 HOH HOH . 
P 7 HOH B 52 2052 2052 HOH HOH . 
P 7 HOH B 53 2053 2053 HOH HOH . 
P 7 HOH B 54 2054 2054 HOH HOH . 
P 7 HOH B 55 2055 2055 HOH HOH . 
P 7 HOH B 56 2056 2056 HOH HOH . 
P 7 HOH B 57 2057 2057 HOH HOH . 
P 7 HOH B 58 2058 2058 HOH HOH . 
P 7 HOH B 59 2059 2059 HOH HOH . 
P 7 HOH B 60 2060 2060 HOH HOH . 
P 7 HOH B 61 2061 2061 HOH HOH . 
P 7 HOH B 62 2062 2062 HOH HOH . 
P 7 HOH B 63 2063 2063 HOH HOH . 
P 7 HOH B 64 2064 2064 HOH HOH . 
P 7 HOH B 65 2065 2065 HOH HOH . 
P 7 HOH B 66 2066 2066 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA LDR . . . F 4 -38.458 -10.112 14.74 1 16.44 ? OAA LDR 2165 A 1 
HETATM 2 C CAB LDR . . . F 4 -40.305 -10.866 9.211 1 18.18 ? CAB LDR 2165 A 1 
HETATM 3 C CAC LDR . . . F 4 -41.333 -12.962 15.885 1 17.41 ? CAC LDR 2165 A 1 
HETATM 4 C CAD LDR . . . F 4 -41.289 -11.821 9.437 1 18.53 ? CAD LDR 2165 A 1 
HETATM 5 C CAE LDR . . . F 4 -42.116 -13.546 14.902 1 16.84 ? CAE LDR 2165 A 1 
HETATM 6 C CAF LDR . . . F 4 -39.558 -10.354 10.258 1 18.01 ? CAF LDR 2165 A 1 
HETATM 7 C CAG LDR . . . F 4 -40.353 -12.015 15.575 1 17.48 ? CAG LDR 2165 A 1 
HETATM 8 C CAH LDR . . . F 4 -41.537 -12.285 10.724 1 18.72 ? CAH LDR 2165 A 1 
HETATM 9 C CAI LDR . . . F 4 -41.975 -13.2 13.561 1 17.49 ? CAI LDR 2165 A 1 
HETATM 10 N NAJ LDR . . . F 4 -39.039 -10.269 12.57 1 17.55 ? NAJ LDR 2165 A 1 
HETATM 11 C CAK LDR . . . F 4 -39.179 -10.629 13.859 1 17.26 ? CAK LDR 2165 A 1 
HETATM 12 C CAL LDR . . . F 4 -39.763 -10.784 11.562 1 17.76 ? CAL LDR 2165 A 1 
HETATM 13 C CAM LDR . . . F 4 -40.178 -11.644 14.25 1 17.58 ? CAM LDR 2165 A 1 
HETATM 14 C CAN LDR . . . F 4 -40.816 -11.792 11.809 1 18.17 ? CAN LDR 2165 A 1 
HETATM 15 C CAO LDR . . . F 4 -41.036 -12.242 13.202 1 17.7 ? CAO LDR 2165 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           15 
#