data_4AWB
#
_model_server_result.job_id            RDebA0hPLn4P7a1-1bYGXw 
_model_server_result.datetime_utc      '2024-11-05 00:31:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4awb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":311}' 
#
_entry.id    4AWB 
#
_exptl.entry_id    4AWB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AWB 
_cell.length_a            63.9 
_cell.length_b            63.9 
_cell.length_c            144.39 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AWB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 66 A ASN 91 1_555 G C1 NAG . A NAG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 A ND2 ASN 142 A ASN 167 1_555 E C1 NAG . A NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 A SG CYS 164 A CYS 189 1_555 C C1 0QE 5 I 0QE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 ? 
covale ? covale4 A ND2 ASN 247 A ASN 272 1_555 F C1 NAG . A NAG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale5 B ND2 ASN 66 B ASN 91 1_555 M C1 NAG . B NAG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? 
covale ? covale6 B ND2 ASN 142 B ASN 167 1_555 K C1 NAG . B NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 B SG CYS 164 B CYS 189 1_555 D C1 0QE 5 J 0QE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? 
covale ? covale8 B ND2 ASN 247 B ASN 272 1_555 L C1 NAG . B NAG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale9 C C1 PHQ 1 I PHQ 300 1_555 C N ALA 2 I ALA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale10 C C ALA 3 I ALA 302 1_555 C N ZSN 4 I ZSN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale11 C C ZSN 4 I ZSN 303 1_555 C C1 0QE 5 I 0QE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
covale ? covale12 D C1 PHQ 1 J PHQ 300 1_555 D N ALA 2 J ALA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale13 D C ALA 3 J ALA 302 1_555 D N ZSN 4 J ZSN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale14 D C ZSN 4 J ZSN 303 1_555 D C1 0QE 5 J 0QE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? 
metalc ? metalc1 A NE2 HIS 137 A HIS 162 1_555 J HG HG . A HG 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc2 A SG CYS 194 A CYS 219 1_555 I HG HG . A HG 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc3 B NE2 HIS 137 B HIS 162 1_555 P HG HG . B HG 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc4 B SG CYS 194 B CYS 219 1_555 O HG HG . B HG 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 241 n n 
C1 O1 NAG sing 242 n n 
C1 O5 NAG sing 243 n n 
C1 H1 NAG sing 244 n n 
C2 C3 NAG sing 245 n n 
C2 N2 NAG sing 246 n n 
C2 H2 NAG sing 247 n n 
C3 C4 NAG sing 248 n n 
C3 O3 NAG sing 249 n n 
C3 H3 NAG sing 250 n n 
C4 C5 NAG sing 251 n n 
C4 O4 NAG sing 252 n n 
C4 H4 NAG sing 253 n n 
C5 C6 NAG sing 254 n n 
C5 O5 NAG sing 255 n n 
C5 H5 NAG sing 256 n n 
C6 O6 NAG sing 257 n n 
C6 H61 NAG sing 258 n n 
C6 H62 NAG sing 259 n n 
C7 C8 NAG sing 260 n n 
C7 N2 NAG sing 261 n n 
C7 O7 NAG doub 262 n n 
C8 H81 NAG sing 263 n n 
C8 H82 NAG sing 264 n n 
C8 H83 NAG sing 265 n n 
N2 HN2 NAG sing 266 n n 
O1 HO1 NAG sing 267 n n 
O3 HO3 NAG sing 268 n n 
O4 HO4 NAG sing 269 n n 
O6 HO6 NAG sing 270 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4AWB 
_atom_sites.fract_transf_matrix[1][1]    0.015649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015649 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006926 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 310 310 NAG NAG . 
F 3 NAG A 1 311 311 NAG NAG . 
G 3 NAG A 1 312 312 NAG NAG . 
H 4 SO4 A 1 320 320 SO4 SO4 . 
I 5 HG A 1 325 325 HG HG . 
J 5 HG A 1 326 326 HG HG . 
K 3 NAG B 1 310 310 NAG NAG . 
L 3 NAG B 1 311 311 NAG NAG . 
M 3 NAG B 1 312 312 NAG NAG . 
N 4 SO4 B 1 320 320 SO4 SO4 . 
O 5 HG B 1 325 325 HG HG . 
P 5 HG B 1 326 326 HG HG . 
Q 6 HOH A 1 2001 2001 HOH HOH . 
Q 6 HOH A 2 2002 2002 HOH HOH . 
Q 6 HOH A 3 2003 2003 HOH HOH . 
Q 6 HOH A 4 2004 2004 HOH HOH . 
Q 6 HOH A 5 2005 2005 HOH HOH . 
Q 6 HOH A 6 2006 2006 HOH HOH . 
Q 6 HOH A 7 2007 2007 HOH HOH . 
Q 6 HOH A 8 2008 2008 HOH HOH . 
Q 6 HOH A 9 2009 2009 HOH HOH . 
Q 6 HOH A 10 2010 2010 HOH HOH . 
Q 6 HOH A 11 2011 2011 HOH HOH . 
Q 6 HOH A 12 2012 2012 HOH HOH . 
Q 6 HOH A 13 2013 2013 HOH HOH . 
Q 6 HOH A 14 2014 2014 HOH HOH . 
Q 6 HOH A 15 2015 2015 HOH HOH . 
Q 6 HOH A 16 2016 2016 HOH HOH . 
Q 6 HOH A 17 2017 2017 HOH HOH . 
Q 6 HOH A 18 2018 2018 HOH HOH . 
Q 6 HOH A 19 2019 2019 HOH HOH . 
Q 6 HOH A 20 2020 2020 HOH HOH . 
Q 6 HOH A 21 2021 2021 HOH HOH . 
Q 6 HOH A 22 2022 2022 HOH HOH . 
Q 6 HOH A 23 2023 2023 HOH HOH . 
Q 6 HOH A 24 2024 2024 HOH HOH . 
Q 6 HOH A 25 2025 2025 HOH HOH . 
Q 6 HOH A 26 2026 2026 HOH HOH . 
Q 6 HOH A 27 2027 2027 HOH HOH . 
Q 6 HOH A 28 2028 2028 HOH HOH . 
Q 6 HOH A 29 2029 2029 HOH HOH . 
Q 6 HOH A 30 2030 2030 HOH HOH . 
Q 6 HOH A 31 2031 2031 HOH HOH . 
Q 6 HOH A 32 2032 2032 HOH HOH . 
Q 6 HOH A 33 2033 2033 HOH HOH . 
Q 6 HOH A 34 2034 2034 HOH HOH . 
Q 6 HOH A 35 2035 2035 HOH HOH . 
Q 6 HOH A 36 2036 2036 HOH HOH . 
Q 6 HOH A 37 2037 2037 HOH HOH . 
Q 6 HOH A 38 2038 2038 HOH HOH . 
Q 6 HOH A 39 2039 2039 HOH HOH . 
Q 6 HOH A 40 2040 2040 HOH HOH . 
Q 6 HOH A 41 2041 2041 HOH HOH . 
Q 6 HOH A 42 2042 2042 HOH HOH . 
Q 6 HOH A 43 2043 2043 HOH HOH . 
Q 6 HOH A 44 2044 2044 HOH HOH . 
Q 6 HOH A 45 2045 2045 HOH HOH . 
Q 6 HOH A 46 2046 2046 HOH HOH . 
Q 6 HOH A 47 2047 2047 HOH HOH . 
R 6 HOH B 1 2001 2001 HOH HOH . 
R 6 HOH B 2 2002 2002 HOH HOH . 
R 6 HOH B 3 2003 2003 HOH HOH . 
R 6 HOH B 4 2004 2004 HOH HOH . 
R 6 HOH B 5 2005 2005 HOH HOH . 
R 6 HOH B 6 2006 2006 HOH HOH . 
R 6 HOH B 7 2007 2007 HOH HOH . 
R 6 HOH B 8 2008 2008 HOH HOH . 
R 6 HOH B 9 2009 2009 HOH HOH . 
R 6 HOH B 10 2010 2010 HOH HOH . 
R 6 HOH B 11 2011 2011 HOH HOH . 
R 6 HOH B 12 2012 2012 HOH HOH . 
R 6 HOH B 13 2013 2013 HOH HOH . 
R 6 HOH B 14 2014 2014 HOH HOH . 
R 6 HOH B 15 2015 2015 HOH HOH . 
R 6 HOH B 16 2016 2016 HOH HOH . 
R 6 HOH B 17 2017 2017 HOH HOH . 
R 6 HOH B 18 2018 2018 HOH HOH . 
R 6 HOH B 19 2019 2019 HOH HOH . 
R 6 HOH B 20 2020 2020 HOH HOH . 
R 6 HOH B 21 2021 2021 HOH HOH . 
R 6 HOH B 22 2022 2022 HOH HOH . 
R 6 HOH B 23 2023 2023 HOH HOH . 
R 6 HOH B 24 2024 2024 HOH HOH . 
R 6 HOH B 25 2025 2025 HOH HOH . 
R 6 HOH B 26 2026 2026 HOH HOH . 
R 6 HOH B 27 2027 2027 HOH HOH . 
R 6 HOH B 28 2028 2028 HOH HOH . 
R 6 HOH B 29 2029 2029 HOH HOH . 
R 6 HOH B 30 2030 2030 HOH HOH . 
R 6 HOH B 31 2031 2031 HOH HOH . 
R 6 HOH B 32 2032 2032 HOH HOH . 
R 6 HOH B 33 2033 2033 HOH HOH . 
R 6 HOH B 34 2034 2034 HOH HOH . 
R 6 HOH B 35 2035 2035 HOH HOH . 
R 6 HOH B 36 2036 2036 HOH HOH . 
R 6 HOH B 37 2037 2037 HOH HOH . 
R 6 HOH B 38 2038 2038 HOH HOH . 
R 6 HOH B 39 2039 2039 HOH HOH . 
R 6 HOH B 40 2040 2040 HOH HOH . 
R 6 HOH B 41 2041 2041 HOH HOH . 
R 6 HOH B 42 2042 2042 HOH HOH . 
R 6 HOH B 43 2043 2043 HOH HOH . 
R 6 HOH B 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 3 16.02 2.908 1.848 1 59.62 ? C1 NAG 311 B 1 
HETATM 2 C C2 NAG . . . L 3 16.822 1.683 2.309 1 60.46 ? C2 NAG 311 B 1 
HETATM 3 C C3 NAG . . . L 3 16.021 0.374 2.298 1 60.51 ? C3 NAG 311 B 1 
HETATM 4 C C4 NAG . . . L 3 14.555 0.54 2.697 1 60.38 ? C4 NAG 311 B 1 
HETATM 5 C C5 NAG . . . L 3 13.947 1.748 1.987 1 60.31 ? C5 NAG 311 B 1 
HETATM 6 C C6 NAG . . . L 3 12.474 1.937 2.343 1 60.43 ? C6 NAG 311 B 1 
HETATM 7 C C7 NAG . . . L 3 19.156 1.022 1.867 1 60.78 ? C7 NAG 311 B 1 
HETATM 8 C C8 NAG . . . L 3 20.236 0.939 0.828 1 60.75 ? C8 NAG 311 B 1 
HETATM 9 N N2 NAG . . . L 3 17.989 1.524 1.455 1 60.61 ? N2 NAG 311 B 1 
HETATM 10 O O3 NAG . . . L 3 16.634 -0.551 3.168 1 60.74 ? O3 NAG 311 B 1 
HETATM 11 O O4 NAG . . . L 3 13.852 -0.635 2.356 1 60.29 ? O4 NAG 311 B 1 
HETATM 12 O O5 NAG . . . L 3 14.693 2.895 2.35 1 60.03 ? O5 NAG 311 B 1 
HETATM 13 O O6 NAG . . . L 3 12.059 3.249 2.029 1 60.51 ? O6 NAG 311 B 1 
HETATM 14 O O7 NAG . . . L 3 19.377 0.64 3.017 1 60.79 ? O7 NAG 311 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#