data_4AWM
#
_model_server_result.job_id            4Lhd_PlEXu087AUwXjJlfw 
_model_server_result.datetime_utc      '2024-11-25 07:42:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4awm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":911}' 
#
_entry.id    4AWM 
#
_exptl.entry_id    4AWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.372 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AWM 
_cell.length_a            99.94 
_cell.length_b            99.94 
_cell.length_c            82.73 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc7 B MN MN . A MN 901 1_555 D O1 KDH . A KDH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc8 B MN MN . A MN 901 1_555 D O7 KDH . A KDH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc9 C MN MN . A MN 902 1_555 D O1 KDH . A KDH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc10 C MN MN . A MN 902 1_555 F O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc11 C MN MN . A MN 902 1_555 F O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc12 C MN MN . A MN 902 1_555 F O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
#
_chem_comp.formula           'C22 H18 O11' 
_chem_comp.formula_weight    458.372 
_chem_comp.id                KDH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (-)-Epigallocatechin-3-gallate;EGCG 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C3 KDH sing 173 n n 
O1 HO1 KDH sing 174 n n 
C3 C6 KDH doub 175 n y 
C3 C4 KDH sing 176 n y 
C6 O7 KDH sing 177 n n 
C6 C9 KDH sing 178 n y 
O7 HO7 KDH sing 179 n n 
C9 O10 KDH sing 180 n n 
C9 C12 KDH doub 181 n y 
O10 HO10 KDH sing 182 n n 
C12 C14 KDH sing 183 n y 
C12 H12 KDH sing 184 n n 
C14 C15 KDH sing 185 n n 
C14 C4 KDH doub 186 n y 
C15 C33 KDH sing 187 n n 
C15 O01 KDH sing 188 n n 
C15 H15 KDH sing 189 n n 
C20 C21 KDH doub 190 n y 
C20 C31 KDH sing 191 n y 
C20 O01 KDH sing 192 n n 
C21 C24 KDH sing 193 n y 
C21 H21 KDH sing 194 n n 
C24 C26 KDH doub 195 n y 
C24 O02 KDH sing 196 n n 
C26 C29 KDH sing 197 n y 
C26 H26 KDH sing 198 n n 
C29 C31 KDH doub 199 n y 
C29 O03 KDH sing 200 n n 
C31 C01 KDH sing 201 n n 
C33 C01 KDH sing 202 n n 
C33 O35 KDH sing 203 n n 
C33 H33 KDH sing 204 n n 
C36 C38 KDH sing 205 n n 
C36 O35 KDH sing 206 n n 
C36 O37 KDH doub 207 n n 
C38 C39 KDH doub 208 n y 
C38 C41 KDH sing 209 n y 
C39 C49 KDH sing 210 n y 
C39 H39 KDH sing 211 n n 
C41 C43 KDH doub 212 n y 
C41 H41 KDH sing 213 n n 
C01 H01 KDH sing 214 n n 
C01 H01A KDH sing 215 n n 
O02 HO02 KDH sing 216 n n 
O03 HO03 KDH sing 217 n n 
C4 H4 KDH sing 218 n n 
C43 O44 KDH sing 219 n n 
C43 C46 KDH sing 220 n y 
O44 HO44 KDH sing 221 n n 
C46 O47 KDH sing 222 n n 
C46 C49 KDH doub 223 n y 
O47 HO47 KDH sing 224 n n 
C49 O50 KDH sing 225 n n 
O50 HO50 KDH sing 226 n n 
#
_atom_sites.entry_id                     4AWM 
_atom_sites.fract_transf_matrix[1][1]    0.010006 
_atom_sites.fract_transf_matrix[1][2]    0.005777 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012088 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 901 901 MN MN . 
C 2 MN A 1 902 902 MN MN . 
D 3 KDH A 1 911 911 KDH KDH . 
E 3 KDH A 1 921 921 KDH KDH . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 KDH . . . D 3 13.585 -32.157 16.322 1 34.73 ? O1 KDH 911 A 1 
HETATM 2 C C3 KDH . . . D 3 12.579 -32.225 17.225 1 36.61 ? C3 KDH 911 A 1 
HETATM 3 C C6 KDH . . . D 3 11.303 -31.72 16.939 1 36.65 ? C6 KDH 911 A 1 
HETATM 4 O O7 KDH . . . D 3 11.002 -31.134 15.746 1 34.04 ? O7 KDH 911 A 1 
HETATM 5 C C9 KDH . . . D 3 10.318 -31.812 17.901 1 36.22 ? C9 KDH 911 A 1 
HETATM 6 O O10 KDH . . . D 3 9.067 -31.342 17.663 1 38.86 ? O10 KDH 911 A 1 
HETATM 7 C C12 KDH . . . D 3 10.589 -32.388 19.128 1 36.01 ? C12 KDH 911 A 1 
HETATM 8 C C14 KDH . . . D 3 11.849 -32.894 19.415 1 36.8 ? C14 KDH 911 A 1 
HETATM 9 C C15 KDH . . . D 3 12.124 -33.524 20.732 1 37.99 ? C15 KDH 911 A 1 
HETATM 10 C C20 KDH . . . D 3 10.811 -33.403 22.809 1 37.91 ? C20 KDH 911 A 1 
HETATM 11 C C21 KDH . . . D 3 10.128 -32.598 23.713 1 38.06 ? C21 KDH 911 A 1 
HETATM 12 C C24 KDH . . . D 3 9.535 -33.16 24.835 1 38.97 ? C24 KDH 911 A 1 
HETATM 13 C C26 KDH . . . D 3 9.619 -34.539 25.045 1 38.36 ? C26 KDH 911 A 1 
HETATM 14 C C29 KDH . . . D 3 10.308 -35.345 24.14 1 37.24 ? C29 KDH 911 A 1 
HETATM 15 C C31 KDH . . . D 3 10.906 -34.779 23.02 1 37.15 ? C31 KDH 911 A 1 
HETATM 16 C C33 KDH . . . D 3 11.712 -34.995 20.69 1 37.39 ? C33 KDH 911 A 1 
HETATM 17 C C36 KDH . . . D 3 10.09 -35.265 18.883 1 36.97 ? C36 KDH 911 A 1 
HETATM 18 C C38 KDH . . . D 3 8.697 -34.983 18.449 1 37.95 ? C38 KDH 911 A 1 
HETATM 19 C C39 KDH . . . D 3 8.491 -34.437 17.198 1 37.61 ? C39 KDH 911 A 1 
HETATM 20 C C41 KDH . . . D 3 7.624 -35.271 19.301 1 37.64 ? C41 KDH 911 A 1 
HETATM 21 C C01 KDH . . . D 3 11.675 -35.652 22.047 1 36.75 ? C01 KDH 911 A 1 
HETATM 22 O O01 KDH . . . D 3 11.383 -32.799 21.721 1 37.82 ? O01 KDH 911 A 1 
HETATM 23 O O02 KDH . . . D 3 8.871 -32.352 25.718 1 39.92 ? O02 KDH 911 A 1 
HETATM 24 O O03 KDH . . . D 3 10.401 -36.684 24.366 1 36.86 ? O03 KDH 911 A 1 
HETATM 25 C C4 KDH . . . D 3 12.847 -32.814 18.46 1 36.14 ? C4 KDH 911 A 1 
HETATM 26 O O35 KDH . . . D 3 10.36 -35.094 20.28 1 38.97 ? O35 KDH 911 A 1 
HETATM 27 O O37 KDH . . . D 3 10.959 -35.636 18.127 1 38.57 ? O37 KDH 911 A 1 
HETATM 28 C C43 KDH . . . D 3 6.321 -35.01 18.873 1 38.72 ? C43 KDH 911 A 1 
HETATM 29 O O44 KDH . . . D 3 5.253 -35.287 19.689 1 37.47 ? O44 KDH 911 A 1 
HETATM 30 C C46 KDH . . . D 3 6.12 -34.457 17.609 1 38.36 ? C46 KDH 911 A 1 
HETATM 31 O O47 KDH . . . D 3 4.848 -34.183 17.206 1 40.08 ? O47 KDH 911 A 1 
HETATM 32 C C49 KDH . . . D 3 7.201 -34.172 16.77 1 37.91 ? C49 KDH 911 A 1 
HETATM 33 O O50 KDH . . . D 3 7.047 -33.618 15.53 1 38.51 ? O50 KDH 911 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#