data_4AWM # _model_server_result.job_id OxU7B5jSkNwHhWQhMWj4GA _model_server_result.datetime_utc '2024-11-25 08:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4awm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":921}' # _entry.id 4AWM # _exptl.entry_id 4AWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.372 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AWM _cell.length_a 99.94 _cell.length_b 99.94 _cell.length_c 82.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 B MN MN . A MN 901 1_555 D O1 KDH . A KDH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc8 B MN MN . A MN 901 1_555 D O7 KDH . A KDH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 C MN MN . A MN 902 1_555 D O1 KDH . A KDH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc10 C MN MN . A MN 902 1_555 F O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc11 C MN MN . A MN 902 1_555 F O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 C MN MN . A MN 902 1_555 F O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C22 H18 O11' _chem_comp.formula_weight 458.372 _chem_comp.id KDH _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (-)-Epigallocatechin-3-gallate;EGCG # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 KDH sing 173 n n O1 HO1 KDH sing 174 n n C3 C6 KDH doub 175 n y C3 C4 KDH sing 176 n y C6 O7 KDH sing 177 n n C6 C9 KDH sing 178 n y O7 HO7 KDH sing 179 n n C9 O10 KDH sing 180 n n C9 C12 KDH doub 181 n y O10 HO10 KDH sing 182 n n C12 C14 KDH sing 183 n y C12 H12 KDH sing 184 n n C14 C15 KDH sing 185 n n C14 C4 KDH doub 186 n y C15 C33 KDH sing 187 n n C15 O01 KDH sing 188 n n C15 H15 KDH sing 189 n n C20 C21 KDH doub 190 n y C20 C31 KDH sing 191 n y C20 O01 KDH sing 192 n n C21 C24 KDH sing 193 n y C21 H21 KDH sing 194 n n C24 C26 KDH doub 195 n y C24 O02 KDH sing 196 n n C26 C29 KDH sing 197 n y C26 H26 KDH sing 198 n n C29 C31 KDH doub 199 n y C29 O03 KDH sing 200 n n C31 C01 KDH sing 201 n n C33 C01 KDH sing 202 n n C33 O35 KDH sing 203 n n C33 H33 KDH sing 204 n n C36 C38 KDH sing 205 n n C36 O35 KDH sing 206 n n C36 O37 KDH doub 207 n n C38 C39 KDH doub 208 n y C38 C41 KDH sing 209 n y C39 C49 KDH sing 210 n y C39 H39 KDH sing 211 n n C41 C43 KDH doub 212 n y C41 H41 KDH sing 213 n n C01 H01 KDH sing 214 n n C01 H01A KDH sing 215 n n O02 HO02 KDH sing 216 n n O03 HO03 KDH sing 217 n n C4 H4 KDH sing 218 n n C43 O44 KDH sing 219 n n C43 C46 KDH sing 220 n y O44 HO44 KDH sing 221 n n C46 O47 KDH sing 222 n n C46 C49 KDH doub 223 n y O47 HO47 KDH sing 224 n n C49 O50 KDH sing 225 n n O50 HO50 KDH sing 226 n n # _atom_sites.entry_id 4AWM _atom_sites.fract_transf_matrix[1][1] 0.010006 _atom_sites.fract_transf_matrix[1][2] 0.005777 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 901 901 MN MN . C 2 MN A 1 902 902 MN MN . D 3 KDH A 1 911 911 KDH KDH . E 3 KDH A 1 921 921 KDH KDH . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 KDH . . . E 3 28.428 -46.84 25.721 0.5 53.3 ? O1 KDH 921 A 1 HETATM 2 C C3 KDH . . . E 3 28.28 -45.912 26.709 0.5 49.63 ? C3 KDH 921 A 1 HETATM 3 C C6 KDH . . . E 3 28.835 -46.112 27.965 0.5 48.01 ? C6 KDH 921 A 1 HETATM 4 O O7 KDH . . . E 3 29.539 -47.24 28.259 0.5 46.13 ? O7 KDH 921 A 1 HETATM 5 C C9 KDH . . . E 3 28.678 -45.156 28.947 0.5 46.65 ? C9 KDH 921 A 1 HETATM 6 O O10 KDH . . . E 3 29.249 -45.397 30.159 0.5 42.61 ? O10 KDH 921 A 1 HETATM 7 C C12 KDH . . . E 3 27.957 -43.987 28.685 0.5 45.8 ? C12 KDH 921 A 1 HETATM 8 C C14 KDH . . . E 3 27.407 -43.782 27.423 0.5 46.28 ? C14 KDH 921 A 1 HETATM 9 C C15 KDH . . . E 3 26.617 -42.567 27.096 0.5 47.57 ? C15 KDH 921 A 1 HETATM 10 C C20 KDH . . . E 3 25.732 -40.626 28.139 0.5 48.13 ? C20 KDH 921 A 1 HETATM 11 C C21 KDH . . . E 3 25.002 -40.185 29.231 0.5 50.76 ? C21 KDH 921 A 1 HETATM 12 C C24 KDH . . . E 3 24.234 -39.032 29.134 0.5 51.73 ? C24 KDH 921 A 1 HETATM 13 C C26 KDH . . . E 3 24.205 -38.332 27.927 0.5 50.79 ? C26 KDH 921 A 1 HETATM 14 C C29 KDH . . . E 3 24.943 -38.783 26.834 0.5 49.28 ? C29 KDH 921 A 1 HETATM 15 C C31 KDH . . . E 3 25.707 -39.938 26.943 0.5 48.17 ? C31 KDH 921 A 1 HETATM 16 C C33 KDH . . . E 3 27.228 -41.742 25.955 0.5 48.68 ? C33 KDH 921 A 1 HETATM 17 C C36 KDH . . . E 3 29.05 -40.904 27.377 0.5 46.44 ? C36 KDH 921 A 1 HETATM 18 C C38 KDH . . . E 3 30.39 -40.263 27.458 0.5 47.44 ? C38 KDH 921 A 1 HETATM 19 C C39 KDH . . . E 3 30.914 -39.927 28.699 0.5 46.55 ? C39 KDH 921 A 1 HETATM 20 C C41 KDH . . . E 3 31.104 -40.017 26.294 0.5 46.36 ? C41 KDH 921 A 1 HETATM 21 C C01 KDH . . . E 3 26.5 -40.411 25.744 0.5 48.14 ? C01 KDH 921 A 1 HETATM 22 O O01 KDH . . . E 3 26.474 -41.758 28.251 0.5 48.29 ? O01 KDH 921 A 1 HETATM 23 O O02 KDH . . . E 3 23.522 -38.605 30.22 0.5 52.96 ? O02 KDH 921 A 1 HETATM 24 O O03 KDH . . . E 3 24.918 -38.093 25.657 0.5 44.75 ? O03 KDH 921 A 1 HETATM 25 C C4 KDH . . . E 3 27.568 -44.75 26.442 0.5 48.66 ? C4 KDH 921 A 1 HETATM 26 O O35 KDH . . . E 3 28.638 -41.517 26.122 0.5 47.82 ? O35 KDH 921 A 1 HETATM 27 O O37 KDH . . . E 3 28.346 -40.924 28.368 0.5 47.35 ? O37 KDH 921 A 1 HETATM 28 C C43 KDH . . . E 3 32.353 -39.423 26.383 0.5 46.49 ? C43 KDH 921 A 1 HETATM 29 O O44 KDH . . . E 3 33.077 -39.166 25.266 0.5 46.77 ? O44 KDH 921 A 1 HETATM 30 C C46 KDH . . . E 3 32.879 -39.087 27.61 0.5 47.09 ? C46 KDH 921 A 1 HETATM 31 O O47 KDH . . . E 3 34.11 -38.509 27.685 0.5 48.8 ? O47 KDH 921 A 1 HETATM 32 C C49 KDH . . . E 3 32.165 -39.336 28.762 0.5 46.42 ? C49 KDH 921 A 1 HETATM 33 O O50 KDH . . . E 3 32.705 -38.995 29.955 0.5 46.37 ? O50 KDH 921 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 33 #