data_4AX8
#
_model_server_result.job_id            0D2RGbSJok9MlWxyIiINnQ 
_model_server_result.datetime_utc      '2025-06-24 04:48:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ax8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1474}' 
#
_entry.id    4AX8 
#
_exptl.entry_id    4AX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AX8 
_cell.length_a            167.34 
_cell.length_b            167.34 
_cell.length_c            167.34 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 319 n n 
N HN1 SAM sing 320 n n 
N HN2 SAM sing 321 n n 
CA C SAM sing 322 n n 
CA CB SAM sing 323 n n 
CA HA SAM sing 324 n n 
C O SAM doub 325 n n 
C OXT SAM sing 326 n n 
CB CG SAM sing 327 n n 
CB HB1 SAM sing 328 n n 
CB HB2 SAM sing 329 n n 
CG SD SAM sing 330 n n 
CG HG1 SAM sing 331 n n 
CG HG2 SAM sing 332 n n 
SD CE SAM sing 333 n n 
SD C5' SAM sing 334 n n 
CE HE1 SAM sing 335 n n 
CE HE2 SAM sing 336 n n 
CE HE3 SAM sing 337 n n 
C5' C4' SAM sing 338 n n 
C5' "H5'1" SAM sing 339 n n 
C5' "H5'2" SAM sing 340 n n 
C4' O4' SAM sing 341 n n 
C4' C3' SAM sing 342 n n 
C4' H4' SAM sing 343 n n 
O4' C1' SAM sing 344 n n 
C3' O3' SAM sing 345 n n 
C3' C2' SAM sing 346 n n 
C3' H3' SAM sing 347 n n 
O3' HO3' SAM sing 348 n n 
C2' O2' SAM sing 349 n n 
C2' C1' SAM sing 350 n n 
C2' H2' SAM sing 351 n n 
O2' HO2' SAM sing 352 n n 
C1' N9 SAM sing 353 n n 
C1' H1' SAM sing 354 n n 
N9 C8 SAM sing 355 n y 
N9 C4 SAM sing 356 n y 
C8 N7 SAM doub 357 n y 
C8 H8 SAM sing 358 n n 
N7 C5 SAM sing 359 n y 
C5 C6 SAM sing 360 n y 
C5 C4 SAM doub 361 n y 
C6 N6 SAM sing 362 n n 
C6 N1 SAM doub 363 n y 
N6 HN61 SAM sing 364 n n 
N6 HN62 SAM sing 365 n n 
N1 C2 SAM sing 366 n y 
C2 N3 SAM doub 367 n y 
C2 H2 SAM sing 368 n n 
N3 C4 SAM sing 369 n y 
#
_atom_sites.entry_id                     4AX8 
_atom_sites.fract_transf_matrix[1][1]    0.005976 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005976 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 1474 1474 SAM SAM . 
C 3 SO4 A 1 1475 1475 SO4 SO4 . 
D 3 SO4 A 1 1476 1476 SO4 SO4 . 
E 4 ADP A 1 1477 1477 ADP ADP . 
F 5 CL A 1 1478 1478 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . B 2 44.991 64.917 95.697 1 63.96 ? N SAM 1474 A 1 
HETATM 2 C CA SAM . . . B 2 45.296 63.536 96.073 1 63.96 ? CA SAM 1474 A 1 
HETATM 3 C C SAM . . . B 2 45.203 63.321 97.573 1 66.86 ? C SAM 1474 A 1 
HETATM 4 O O SAM . . . B 2 45.658 64.187 98.375 1 74.03 ? O SAM 1474 A 1 
HETATM 5 O OXT SAM . . . B 2 44.694 62.254 97.995 1 60.49 ? OXT SAM 1474 A 1 
HETATM 6 C CB SAM . . . B 2 46.707 63.13 95.581 1 67.94 ? CB SAM 1474 A 1 
HETATM 7 C CG SAM . . . B 2 47.887 63.961 96.075 1 67.59 ? CG SAM 1474 A 1 
HETATM 8 S SD SAM . . . B 2 49.311 63.56 95.314 1 71.34 ? SD SAM 1474 A 1 
HETATM 9 C CE SAM . . . B 2 50.633 63.863 96.324 1 68.72 ? CE SAM 1474 A 1 
HETATM 10 C C5' SAM . . . B 2 49.476 64.565 94.004 1 66.19 ? C5' SAM 1474 A 1 
HETATM 11 C C4' SAM . . . B 2 48.654 64.171 92.782 1 60.23 ? C4' SAM 1474 A 1 
HETATM 12 O O4' SAM . . . B 2 48.573 65.215 91.818 1 59.19 ? O4' SAM 1474 A 1 
HETATM 13 C C3' SAM . . . B 2 49.299 63.053 92.001 1 58.86 ? C3' SAM 1474 A 1 
HETATM 14 O O3' SAM . . . B 2 48.202 62.252 91.564 1 57.45 ? O3' SAM 1474 A 1 
HETATM 15 C C2' SAM . . . B 2 50.028 63.657 90.809 1 55.92 ? C2' SAM 1474 A 1 
HETATM 16 O O2' SAM . . . B 2 50.009 62.784 89.694 1 49.73 ? O2' SAM 1474 A 1 
HETATM 17 C C1' SAM . . . B 2 49.153 64.852 90.535 1 59.8 ? C1' SAM 1474 A 1 
HETATM 18 N N9 SAM . . . B 2 49.755 66.092 90.018 1 58.41 ? N9 SAM 1474 A 1 
HETATM 19 C C8 SAM . . . B 2 50.804 66.753 90.535 1 60.64 ? C8 SAM 1474 A 1 
HETATM 20 N N7 SAM . . . B 2 51.041 67.912 89.844 1 55.58 ? N7 SAM 1474 A 1 
HETATM 21 C C5 SAM . . . B 2 50.085 67.974 88.884 1 49.7 ? C5 SAM 1474 A 1 
HETATM 22 C C6 SAM . . . B 2 49.717 68.92 87.833 1 50.39 ? C6 SAM 1474 A 1 
HETATM 23 N N6 SAM . . . B 2 50.459 70.036 87.67 1 56.05 ? N6 SAM 1474 A 1 
HETATM 24 N N1 SAM . . . B 2 48.652 68.653 87.059 1 52.95 ? N1 SAM 1474 A 1 
HETATM 25 C C2 SAM . . . B 2 47.922 67.541 87.249 1 59.46 ? C2 SAM 1474 A 1 
HETATM 26 N N3 SAM . . . B 2 48.209 66.641 88.206 1 54 ? N3 SAM 1474 A 1 
HETATM 27 C C4 SAM . . . B 2 49.242 66.8 89.026 1 50.28 ? C4 SAM 1474 A 1 
HETATM 28 H HN1 SAM . . . B 2 45.017 65.191 94.736 1 63.96 ? HN1 SAM 1474 A 1 
HETATM 29 H HN2 SAM . . . B 2 44.757 65.587 96.402 1 63.96 ? HN2 SAM 1474 A 1 
HETATM 30 H HA SAM . . . B 2 44.541 62.901 95.587 1 63.96 ? HA SAM 1474 A 1 
HETATM 31 H HB1 SAM . . . B 2 46.881 62.084 95.873 1 67.94 ? HB1 SAM 1474 A 1 
HETATM 32 H HB2 SAM . . . B 2 46.706 63.161 94.481 1 67.94 ? HB2 SAM 1474 A 1 
HETATM 33 H HG1 SAM . . . B 2 47.675 65.028 95.91 1 67.59 ? HG1 SAM 1474 A 1 
HETATM 34 H HG2 SAM . . . B 2 48.002 63.82 97.16 1 67.59 ? HG2 SAM 1474 A 1 
HETATM 35 H HE1 SAM . . . B 2 50.658 64.931 96.586 1 68.72 ? HE1 SAM 1474 A 1 
HETATM 36 H HE2 SAM . . . B 2 50.539 63.264 97.242 1 68.72 ? HE2 SAM 1474 A 1 
HETATM 37 H HE3 SAM . . . B 2 51.563 63.592 95.803 1 68.72 ? HE3 SAM 1474 A 1 
HETATM 38 H "H5'1" SAM . . . B 2 49.192 65.584 94.305 1 66.19 ? "H5'1" SAM 1474 A 1 
HETATM 39 H "H5'2" SAM . . . B 2 50.538 64.598 93.718 1 66.19 ? "H5'2" SAM 1474 A 1 
HETATM 40 H H4' SAM . . . B 2 47.675 63.901 93.205 1 60.23 ? H4' SAM 1474 A 1 
HETATM 41 H H3' SAM . . . B 2 50.027 62.468 92.581 1 58.86 ? H3' SAM 1474 A 1 
HETATM 42 H HO3' SAM . . . B 2 47.496 62.84 91.17 1 57.45 ? HO3' SAM 1474 A 1 
HETATM 43 H H2' SAM . . . B 2 51.09 63.875 90.993 1 55.92 ? H2' SAM 1474 A 1 
HETATM 44 H HO2' SAM . . . B 2 49.107 62.358 89.619 1 49.73 ? HO2' SAM 1474 A 1 
HETATM 45 H H1' SAM . . . B 2 48.485 64.514 89.729 1 59.8 ? H1' SAM 1474 A 1 
HETATM 46 H H8 SAM . . . B 2 51.394 66.41 91.398 1 60.64 ? H8 SAM 1474 A 1 
HETATM 47 H HN61 SAM . . . B 2 50.222 70.694 86.956 1 56.05 ? HN61 SAM 1474 A 1 
HETATM 48 H HN62 SAM . . . B 2 51.246 70.204 88.264 1 56.05 ? HN62 SAM 1474 A 1 
HETATM 49 H H2 SAM . . . B 2 47.056 67.36 86.596 1 59.46 ? H2 SAM 1474 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           49 
#