data_4AXF # _model_server_result.job_id 5Gixgj0yuJJXnYU_Hlt2kw _model_server_result.datetime_utc '2024-11-12 21:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4axf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 4AXF # _exptl.entry_id 4AXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AXF _cell.length_a 61.62 _cell.length_b 65.08 _cell.length_c 122.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 325 A HIS 320 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A SG CYS 335 A CYS 330 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A SG CYS 338 A CYS 333 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 A NE2 HIS 351 A HIS 346 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 4AXF _atom_sites.fract_transf_matrix[1][1] 0.016228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 700 700 ZN ZN . C 3 ANP A 1 600 600 ANP ANP . D 4 4MY A 1 900 900 4MY 4MY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -19.075 -9.012 -14.192 1 22.44 ? PG ANP 600 A 1 HETATM 2 O O1G ANP . . . C 3 -18.865 -7.662 -13.521 1 22.05 ? O1G ANP 600 A 1 HETATM 3 O O2G ANP . . . C 3 -17.939 -9.993 -13.982 1 21.18 ? O2G ANP 600 A 1 HETATM 4 O O3G ANP . . . C 3 -20.427 -9.651 -13.923 1 21.42 ? O3G ANP 600 A 1 HETATM 5 P PB ANP . . . C 3 -19.787 -7.172 -16.553 1 19.45 ? PB ANP 600 A 1 HETATM 6 O O1B ANP . . . C 3 -21.266 -7.172 -16.243 1 18.68 ? O1B ANP 600 A 1 HETATM 7 O O2B ANP . . . C 3 -18.977 -5.997 -16.06 1 19.01 ? O2B ANP 600 A 1 HETATM 8 N N3B ANP . . . C 3 -19.066 -8.645 -15.915 1 20.4 ? N3B ANP 600 A 1 HETATM 9 P PA ANP . . . C 3 -18.306 -7.664 -18.956 1 18.94 ? PA ANP 600 A 1 HETATM 10 O O1A ANP . . . C 3 -17.784 -8.963 -18.371 1 18.23 ? O1A ANP 600 A 1 HETATM 11 O O2A ANP . . . C 3 -17.392 -6.462 -19.082 1 18.63 ? O2A ANP 600 A 1 HETATM 12 O O3A ANP . . . C 3 -19.648 -7.198 -18.165 1 19.11 ? O3A ANP 600 A 1 HETATM 13 O O5' ANP . . . C 3 -18.889 -7.995 -20.423 1 17.96 ? O5' ANP 600 A 1 HETATM 14 C C5' ANP . . . C 3 -19.906 -8.989 -20.562 1 17.16 ? C5' ANP 600 A 1 HETATM 15 C C4' ANP . . . C 3 -19.634 -9.874 -21.77 1 16.62 ? C4' ANP 600 A 1 HETATM 16 O O4' ANP . . . C 3 -19.581 -9.079 -22.957 1 16.32 ? O4' ANP 600 A 1 HETATM 17 C C3' ANP . . . C 3 -18.296 -10.584 -21.662 1 16.47 ? C3' ANP 600 A 1 HETATM 18 O O3' ANP . . . C 3 -18.46 -11.893 -21.115 1 16.19 ? O3' ANP 600 A 1 HETATM 19 C C2' ANP . . . C 3 -17.78 -10.614 -23.088 1 16.33 ? C2' ANP 600 A 1 HETATM 20 O O2' ANP . . . C 3 -18.138 -11.839 -23.736 1 16.58 ? O2' ANP 600 A 1 HETATM 21 C C1' ANP . . . C 3 -18.496 -9.481 -23.8 1 16.33 ? C1' ANP 600 A 1 HETATM 22 N N9 ANP . . . C 3 -17.543 -8.363 -24.028 1 16.16 ? N9 ANP 600 A 1 HETATM 23 C C8 ANP . . . C 3 -17.305 -7.334 -23.189 1 16.2 ? C8 ANP 600 A 1 HETATM 24 N N7 ANP . . . C 3 -16.371 -6.483 -23.694 1 16.29 ? N7 ANP 600 A 1 HETATM 25 C C5 ANP . . . C 3 -15.989 -6.973 -24.892 1 16.23 ? C5 ANP 600 A 1 HETATM 26 C C6 ANP . . . C 3 -15.034 -6.574 -25.964 1 16.02 ? C6 ANP 600 A 1 HETATM 27 N N6 ANP . . . C 3 -14.286 -5.449 -25.852 1 15.74 ? N6 ANP 600 A 1 HETATM 28 N N1 ANP . . . C 3 -14.944 -7.367 -27.06 1 16.02 ? N1 ANP 600 A 1 HETATM 29 C C2 ANP . . . C 3 -15.688 -8.487 -27.189 1 16 ? C2 ANP 600 A 1 HETATM 30 N N3 ANP . . . C 3 -16.568 -8.915 -26.258 1 16.21 ? N3 ANP 600 A 1 HETATM 31 C C4 ANP . . . C 3 -16.764 -8.215 -25.106 1 16.22 ? C4 ANP 600 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #