data_4AXF # _model_server_result.job_id LlcxTqGUCQtCRSqznFGRGQ _model_server_result.datetime_utc '2024-11-23 20:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4axf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 4AXF # _exptl.entry_id 4AXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.075 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Myo inositol 3,4,5,6 tetrakisphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AXF _cell.length_a 61.62 _cell.length_b 65.08 _cell.length_c 122.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 325 A HIS 320 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A SG CYS 335 A CYS 330 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A SG CYS 338 A CYS 333 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 A NE2 HIS 351 A HIS 346 1_555 B ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C6 H16 O18 P4' _chem_comp.formula_weight 500.075 _chem_comp.id 4MY _chem_comp.mon_nstd_flag . _chem_comp.name 'Myo inositol 3,4,5,6 tetrakisphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 4MY sing 1 n n C2 C1 4MY sing 2 n n C1 C6 4MY sing 3 n n C1 H1 4MY sing 4 n n O12 C2 4MY sing 5 n n C2 C3 4MY sing 6 n n C2 H2 4MY sing 7 n n O13 C3 4MY sing 8 n n C3 C4 4MY sing 9 n n C3 H3 4MY sing 10 n n O23 P3 4MY doub 11 n n P3 O13 4MY sing 12 n n P3 O43 4MY sing 13 n n P3 O33 4MY sing 14 n n C4 C5 4MY sing 15 n n C4 O14 4MY sing 16 n n C4 H4 4MY sing 17 n n O44 P4 4MY doub 18 n n O14 P4 4MY sing 19 n n P4 O24 4MY sing 20 n n P4 O34 4MY sing 21 n n C6 C5 4MY sing 22 n n C5 O15 4MY sing 23 n n C5 H5 4MY sing 24 n n O15 P5 4MY sing 25 n n O35 P5 4MY doub 26 n n P5 O25 4MY sing 27 n n P5 O45 4MY sing 28 n n C6 O16 4MY sing 29 n n C6 H6 4MY sing 30 n n O46 P6 4MY doub 31 n n O26 P6 4MY sing 32 n n P6 O16 4MY sing 33 n n P6 O36 4MY sing 34 n n O11 HO11 4MY sing 35 n n O12 HO12 4MY sing 36 n n O24 HO24 4MY sing 37 n n O25 HO25 4MY sing 38 n n O26 HO26 4MY sing 39 n n O33 HO33 4MY sing 40 n n O34 HO34 4MY sing 41 n n O36 HO36 4MY sing 42 n n O43 HO43 4MY sing 43 n n O45 HO45 4MY sing 44 n n # _atom_sites.entry_id 4AXF _atom_sites.fract_transf_matrix[1][1] 0.016228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 700 700 ZN ZN . C 3 ANP A 1 600 600 ANP ANP . D 4 4MY A 1 900 900 4MY 4MY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4MY . . . D 4 -20.767 -12.834 -10.728 1 19.14 ? C1 4MY 900 A 1 HETATM 2 C C2 4MY . . . D 4 -20.456 -11.386 -11.118 1 19.52 ? C2 4MY 900 A 1 HETATM 3 C C3 4MY . . . D 4 -20.074 -10.573 -9.882 1 19.84 ? C3 4MY 900 A 1 HETATM 4 P P3 4MY . . . D 4 -20.604 -7.995 -10.288 1 22.4 ? P3 4MY 900 A 1 HETATM 5 C C4 4MY . . . D 4 -18.943 -11.215 -9.078 1 19.23 ? C4 4MY 900 A 1 HETATM 6 P P4 4MY . . . D 4 -17.338 -9.967 -7.354 1 18.66 ? P4 4MY 900 A 1 HETATM 7 C C5 4MY . . . D 4 -19.164 -12.703 -8.772 1 18.82 ? C5 4MY 900 A 1 HETATM 8 P P5 4MY . . . D 4 -17.835 -14.111 -6.912 1 18.45 ? P5 4MY 900 A 1 HETATM 9 C C6 4MY . . . D 4 -19.57 -13.487 -10.024 1 18.69 ? C6 4MY 900 A 1 HETATM 10 P P6 4MY . . . D 4 -19.145 -16.119 -10.381 1 17.48 ? P6 4MY 900 A 1 HETATM 11 O O11 4MY . . . D 4 -21.157 -13.579 -11.891 1 19.2 ? O11 4MY 900 A 1 HETATM 12 O O12 4MY . . . D 4 -19.389 -11.34 -12.079 1 19.33 ? O12 4MY 900 A 1 HETATM 13 O O13 4MY . . . D 4 -19.625 -9.281 -10.283 1 21.19 ? O13 4MY 900 A 1 HETATM 14 O O14 4MY . . . D 4 -18.785 -10.461 -7.876 1 18.79 ? O14 4MY 900 A 1 HETATM 15 O O15 4MY . . . D 4 -17.941 -13.249 -8.274 1 18.49 ? O15 4MY 900 A 1 HETATM 16 O O16 4MY . . . D 4 -19.856 -14.844 -9.675 1 18.05 ? O16 4MY 900 A 1 HETATM 17 O O23 4MY . . . D 4 -21.159 -8.016 -11.694 1 21.71 ? O23 4MY 900 A 1 HETATM 18 O O24 4MY . . . D 4 -17.506 -8.499 -7.018 1 17.67 ? O24 4MY 900 A 1 HETATM 19 O O25 4MY . . . D 4 -18.665 -15.35 -7.139 1 18.02 ? O25 4MY 900 A 1 HETATM 20 O O26 4MY . . . D 4 -20.227 -16.681 -11.282 1 16.95 ? O26 4MY 900 A 1 HETATM 21 O O33 4MY . . . D 4 -21.617 -8.284 -9.194 1 21.66 ? O33 4MY 900 A 1 HETATM 22 O O34 4MY . . . D 4 -16.406 -10.21 -8.514 1 18.07 ? O34 4MY 900 A 1 HETATM 23 O O35 4MY . . . D 4 -16.348 -14.386 -6.807 1 18.07 ? O35 4MY 900 A 1 HETATM 24 O O36 4MY . . . D 4 -17.928 -15.587 -11.107 1 17.16 ? O36 4MY 900 A 1 HETATM 25 O O43 4MY . . . D 4 -19.679 -6.82 -10.023 1 21.85 ? O43 4MY 900 A 1 HETATM 26 O O44 4MY . . . D 4 -17.069 -10.853 -6.156 1 18.12 ? O44 4MY 900 A 1 HETATM 27 O O45 4MY . . . D 4 -18.418 -13.22 -5.839 1 18.25 ? O45 4MY 900 A 1 HETATM 28 O O46 4MY . . . D 4 -18.796 -17.011 -9.216 1 16.84 ? O46 4MY 900 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #