data_4AY5 # _model_server_result.job_id M1kn95kt2MnZszeMIph8YQ _model_server_result.datetime_utc '2024-11-07 01:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ay5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1202}' # _entry.id 4AY5 # _exptl.entry_id 4AY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AY5 _cell.length_a 274.17 _cell.length_b 274.17 _cell.length_c 142.15 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M 1 1 B,F,J,N 2 1 C,G,K,O 3 1 D,H,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E OG SER 7 I SER 7 1_555 M C1 NAG . I NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale2 F OG SER 7 J SER 7 1_555 N C1 NAG . J NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale3 G OG SER 7 K SER 7 1_555 O C1 NAG . K NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 H OG SER 7 L SER 7 1_555 P C1 NAG . L NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4AY5 _atom_sites.fract_transf_matrix[1][1] 0.003647 _atom_sites.fract_transf_matrix[1][2] 0.002106 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 UDP A 1 1201 1201 UDP UDP . J 3 UDP B 1 1201 1201 UDP UDP . K 3 UDP C 1 1201 1201 UDP UDP . L 3 UDP D 1 1201 1201 UDP UDP . M 4 NAG I 1 1202 1202 NAG NAG . N 4 NAG J 1 1202 1202 NAG NAG . O 4 NAG K 1 1202 1202 NAG NAG . P 4 NAG L 1 1202 1202 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 4 134.033 -29.398 36.984 1 71.91 ? C1 NAG 1202 I 1 HETATM 2 C C2 NAG . . . M 4 133.427 -29.157 38.387 1 64.61 ? C2 NAG 1202 I 1 HETATM 3 C C3 NAG . . . M 4 134.496 -28.927 39.512 1 67.04 ? C3 NAG 1202 I 1 HETATM 4 C C4 NAG . . . M 4 135.618 -29.929 39.328 1 69.65 ? C4 NAG 1202 I 1 HETATM 5 C C5 NAG . . . M 4 136.218 -29.882 37.963 1 70.1 ? C5 NAG 1202 I 1 HETATM 6 C C6 NAG . . . M 4 137.047 -31.172 37.789 1 72.15 ? C6 NAG 1202 I 1 HETATM 7 C C7 NAG . . . M 4 131.164 -28.285 38.5 1 66.87 ? C7 NAG 1202 I 1 HETATM 8 C C8 NAG . . . M 4 130.248 -27.075 38.327 1 63.44 ? C8 NAG 1202 I 1 HETATM 9 N N2 NAG . . . M 4 132.472 -28.052 38.269 1 64.93 ? N2 NAG 1202 I 1 HETATM 10 O O3 NAG . . . M 4 134.004 -29.071 40.961 1 57.66 ? O3 NAG 1202 I 1 HETATM 11 O O4 NAG . . . M 4 136.609 -29.698 40.298 1 77.1 ? O4 NAG 1202 I 1 HETATM 12 O O5 NAG . . . M 4 135.203 -30.157 37.034 1 81.4 ? O5 NAG 1202 I 1 HETATM 13 O O6 NAG . . . M 4 136.168 -32.339 37.709 1 67.25 ? O6 NAG 1202 I 1 HETATM 14 O O7 NAG . . . M 4 130.696 -29.386 38.821 1 58.02 ? O7 NAG 1202 I 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #