data_4AYB # _model_server_result.job_id oIgXDaggcvhSB5WikS6c3g _model_server_result.datetime_utc '2025-07-13 05:03:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ayb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1049}' # _entry.id 4AYB # _exptl.entry_id 4AYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AYB _cell.length_a 195.725 _cell.length_b 212.415 _cell.length_c 128.757 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N ? 14 P N N ? 14 Q N N ? 14 S N N ? 14 T N N ? 14 U N N ? 14 V N N ? 14 X N N ? 14 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 98 A CYS 98 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 98 A CYS 98 1_555 A SG CYS 149 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 575 A CYS 575 1_555 A SG CYS 580 A CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 82 D CYS 82 1_555 D SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 85 D CYS 85 1_555 D SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 176 D CYS 176 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 G SG CYS 13 G CYS 13 1_555 G SG CYS 33 G CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 K SG CYS 7 N CYS 7 1_555 K SG CYS 45 N CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 K SG CYS 10 N CYS 10 1_555 K SG CYS 44 N CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 L SG CYS 9 P CYS 9 1_555 L SG CYS 26 P CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A SG CYS 58 A CYS 58 1_555 N ZN ZN . A ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A SG CYS 61 A CYS 61 1_555 N ZN ZN . A ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A SG CYS 68 A CYS 68 1_555 N ZN ZN . A ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A NE2 HIS 71 A HIS 71 1_555 N ZN ZN . A ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 A SG CYS 98 A CYS 98 1_555 O ZN ZN . A ZN 1881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 A SG CYS 101 A CYS 101 1_555 O ZN ZN . A ZN 1881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 A SG CYS 146 A CYS 146 1_555 O ZN ZN . A ZN 1881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 A SG CYS 149 A CYS 149 1_555 O ZN ZN . A ZN 1881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc9 A NE2 HIS 237 A HIS 237 1_555 Q ZN ZN . A ZN 1883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc10 A OD2 ASP 241 A ASP 241 1_555 Q ZN ZN . A ZN 1883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc11 A ND1 HIS 426 A HIS 426 1_555 P ZN ZN . A ZN 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc12 A OD1 ASP 456 A ASP 456 1_555 R MG MG . A MG 1884 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 A OD2 ASP 456 A ASP 456 1_555 R MG MG . A MG 1884 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc14 A OD1 ASP 458 A ASP 458 1_555 R MG MG . A MG 1884 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc15 A OD2 ASP 458 A ASP 458 1_555 R MG MG . A MG 1884 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc16 A OD1 ASP 460 A ASP 460 1_555 R MG MG . A MG 1884 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc17 P ZN ZN . A ZN 1882 1_555 C OE1 GLU 80 C GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc18 P ZN ZN . A ZN 1882 1_555 C OE2 GLU 80 C GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc19 B ND1 HIS 570 B HIS 570 1_555 T ZN ZN . B ZN 2127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc20 B SG CYS 1064 B CYS 1064 1_555 S ZN ZN . B ZN 2126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc21 B SG CYS 1067 B CYS 1067 1_555 S ZN ZN . B ZN 2126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc22 B SG CYS 1082 B CYS 1082 1_555 S ZN ZN . B ZN 2126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc23 B ND1 HIS 1085 B HIS 1085 1_555 S ZN ZN . B ZN 2126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc24 C NE2 HIS 353 C HIS 353 1_555 V ZN ZN . C ZN 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc25 D SG CYS 203 D CYS 203 1_555 W FE2 SF4 . D SF4 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc26 D SG CYS 206 D CYS 206 1_555 W FE3 SF4 . D SF4 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc27 D SG CYS 209 D CYS 209 1_555 W FE1 SF4 . D SF4 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc28 K SG CYS 7 N CYS 7 1_555 X ZN ZN . N ZN 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc29 K SG CYS 10 N CYS 10 1_555 X ZN ZN . N ZN 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc30 K SG CYS 44 N CYS 44 1_555 X ZN ZN . N ZN 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc31 K N CYS 45 N CYS 45 1_555 X ZN ZN . N ZN 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc32 K SG CYS 45 N CYS 45 1_555 X ZN ZN . N ZN 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc33 L SG CYS 9 P CYS 9 1_555 Y ZN ZN . P ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc34 L OG1 THR 12 P THR 12 1_555 Y ZN ZN . P ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc35 L SG CYS 26 P CYS 26 1_555 Y ZN ZN . P ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc36 L SG CYS 29 P CYS 29 1_555 Y ZN ZN . P ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4AYB _atom_sites.fract_transf_matrix[1][1] 0.005109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 ZN A 1 1880 1880 ZN ZN . O 14 ZN A 1 1881 1881 ZN ZN . P 14 ZN A 1 1882 1882 ZN ZN . Q 14 ZN A 1 1883 1883 ZN ZN . R 15 MG A 1 1884 1884 MG MG . S 14 ZN B 1 2126 2126 ZN ZN . T 14 ZN B 1 2127 2127 ZN ZN . U 14 ZN B 1 2128 2128 ZN ZN . V 14 ZN C 1 1395 1395 ZN ZN . W 16 SF4 D 1 1264 1264 SF4 SF4 . X 14 ZN N 1 1066 1066 ZN ZN . Y 14 ZN P 1 1049 1049 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Y _atom_site.label_entity_id 14 _atom_site.Cartn_x -79.112 _atom_site.Cartn_y 60.812 _atom_site.Cartn_z 20.067 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 118.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1049 _atom_site.auth_asym_id P _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 159 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 283 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 39 _model_server_stats.element_count 1 #