data_4AYV
#
_model_server_result.job_id            f_kU_mJYQ5W9DLrDe1rBDQ 
_model_server_result.datetime_utc      '2024-11-24 06:36:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ayv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1259}' 
#
_entry.id    4AYV 
#
_exptl.entry_id    4AYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AYV 
_cell.length_a            90.8 
_cell.length_b            90.8 
_cell.length_c            132.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 9 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 B SG CYS 173 B CYS 173 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 B SG CYS 201 B CYS 201 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B ND2 ASN 53 B ASN 53 1_555 E C1 NAG . B NAG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
metalc ? metalc1 B O ARG 233 B ARG 233 1_555 F NA NA . B NA 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc2 B O LYS 236 B LYS 236 1_555 F NA NA . B NA 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc3 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc4 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? 
metalc ? metalc5 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc6 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 319 n n 
C1 O1 NAG sing 320 n n 
C1 O5 NAG sing 321 n n 
C1 H1 NAG sing 322 n n 
C2 C3 NAG sing 323 n n 
C2 N2 NAG sing 324 n n 
C2 H2 NAG sing 325 n n 
C3 C4 NAG sing 326 n n 
C3 O3 NAG sing 327 n n 
C3 H3 NAG sing 328 n n 
C4 C5 NAG sing 329 n n 
C4 O4 NAG sing 330 n n 
C4 H4 NAG sing 331 n n 
C5 C6 NAG sing 332 n n 
C5 O5 NAG sing 333 n n 
C5 H5 NAG sing 334 n n 
C6 O6 NAG sing 335 n n 
C6 H61 NAG sing 336 n n 
C6 H62 NAG sing 337 n n 
C7 C8 NAG sing 338 n n 
C7 N2 NAG sing 339 n n 
C7 O7 NAG doub 340 n n 
C8 H81 NAG sing 341 n n 
C8 H82 NAG sing 342 n n 
C8 H83 NAG sing 343 n n 
N2 HN2 NAG sing 344 n n 
O1 HO1 NAG sing 345 n n 
O3 HO3 NAG sing 346 n n 
O4 HO4 NAG sing 347 n n 
O6 HO6 NAG sing 348 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4AYV 
_atom_sites.fract_transf_matrix[1][1]    0.011013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 9MQ B 1 1258 1258 9MQ 9MQ . 
E 5 NAG B 1 1259 1259 NAG NAG . 
F 6 NA B 1 1260 1260 NA NA . 
G 7 HOH A 1 2001 2001 HOH HOH . 
G 7 HOH A 2 2002 2002 HOH HOH . 
G 7 HOH A 3 2003 2003 HOH HOH . 
G 7 HOH A 4 2004 2004 HOH HOH . 
G 7 HOH A 5 2005 2005 HOH HOH . 
H 7 HOH B 1 2001 2001 HOH HOH . 
H 7 HOH B 2 2002 2002 HOH HOH . 
H 7 HOH B 3 2003 2003 HOH HOH . 
H 7 HOH B 4 2004 2004 HOH HOH . 
H 7 HOH B 5 2005 2005 HOH HOH . 
H 7 HOH B 6 2006 2006 HOH HOH . 
H 7 HOH B 7 2007 2007 HOH HOH . 
H 7 HOH B 8 2008 2008 HOH HOH . 
H 7 HOH B 9 2009 2009 HOH HOH . 
H 7 HOH B 10 2010 2010 HOH HOH . 
H 7 HOH B 11 2011 2011 HOH HOH . 
H 7 HOH B 12 2012 2012 HOH HOH . 
H 7 HOH B 13 2013 2013 HOH HOH . 
H 7 HOH B 14 2014 2014 HOH HOH . 
H 7 HOH B 15 2015 2015 HOH HOH . 
H 7 HOH B 16 2016 2016 HOH HOH . 
H 7 HOH B 17 2017 2017 HOH HOH . 
H 7 HOH B 18 2018 2018 HOH HOH . 
H 7 HOH B 19 2019 2019 HOH HOH . 
H 7 HOH B 20 2020 2020 HOH HOH . 
H 7 HOH B 21 2021 2021 HOH HOH . 
H 7 HOH B 22 2022 2022 HOH HOH . 
H 7 HOH B 23 2023 2023 HOH HOH . 
H 7 HOH B 24 2024 2024 HOH HOH . 
H 7 HOH B 25 2025 2025 HOH HOH . 
H 7 HOH B 26 2026 2026 HOH HOH . 
H 7 HOH B 27 2027 2027 HOH HOH . 
H 7 HOH B 28 2028 2028 HOH HOH . 
H 7 HOH B 29 2029 2029 HOH HOH . 
H 7 HOH B 30 2030 2030 HOH HOH . 
H 7 HOH B 31 2031 2031 HOH HOH . 
H 7 HOH B 32 2032 2032 HOH HOH . 
H 7 HOH B 33 2033 2033 HOH HOH . 
H 7 HOH B 34 2034 2034 HOH HOH . 
H 7 HOH B 35 2035 2035 HOH HOH . 
H 7 HOH B 36 2036 2036 HOH HOH . 
H 7 HOH B 37 2037 2037 HOH HOH . 
H 7 HOH B 38 2038 2038 HOH HOH . 
H 7 HOH B 39 2039 2039 HOH HOH . 
H 7 HOH B 40 2040 2040 HOH HOH . 
H 7 HOH B 41 2041 2041 HOH HOH . 
H 7 HOH B 42 2042 2042 HOH HOH . 
H 7 HOH B 43 2043 2043 HOH HOH . 
H 7 HOH B 44 2044 2044 HOH HOH . 
H 7 HOH B 45 2045 2045 HOH HOH . 
H 7 HOH B 46 2046 2046 HOH HOH . 
H 7 HOH B 47 2047 2047 HOH HOH . 
H 7 HOH B 48 2048 2048 HOH HOH . 
H 7 HOH B 49 2049 2049 HOH HOH . 
H 7 HOH B 50 2050 2050 HOH HOH . 
H 7 HOH B 51 2051 2051 HOH HOH . 
I 7 HOH D 1 2001 2001 HOH HOH . 
I 7 HOH D 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 5 40.932 -0.247 12.976 1 83.39 ? C1 NAG 1259 B 1 
HETATM 2 C C2 NAG . . . E 5 41.428 -1.415 13.856 1 88.66 ? C2 NAG 1259 B 1 
HETATM 3 C C3 NAG . . . E 5 42.896 -1.753 13.594 1 92.39 ? C3 NAG 1259 B 1 
HETATM 4 C C4 NAG . . . E 5 43.156 -1.913 12.1 1 94.43 ? C4 NAG 1259 B 1 
HETATM 5 C C5 NAG . . . E 5 42.727 -0.61 11.421 1 92.7 ? C5 NAG 1259 B 1 
HETATM 6 C C6 NAG . . . E 5 43.072 -0.593 9.935 1 91.19 ? C6 NAG 1259 B 1 
HETATM 7 C C7 NAG . . . E 5 40.132 -1.476 15.943 1 79.29 ? C7 NAG 1259 B 1 
HETATM 8 C C8 NAG . . . E 5 40.132 -1.224 17.424 1 74.57 ? C8 NAG 1259 B 1 
HETATM 9 N N2 NAG . . . E 5 41.266 -1.204 15.29 1 80.58 ? N2 NAG 1259 B 1 
HETATM 10 O O3 NAG . . . E 5 43.225 -2.942 14.267 1 93.98 ? O3 NAG 1259 B 1 
HETATM 11 O O4 NAG . . . E 5 44.52 -2.21 11.868 1 96.5 ? O4 NAG 1259 B 1 
HETATM 12 O O5 NAG . . . E 5 41.33 -0.425 11.619 1 88.13 ? O5 NAG 1259 B 1 
HETATM 13 O O6 NAG . . . E 5 42.012 -1.153 9.195 1 89.26 ? O6 NAG 1259 B 1 
HETATM 14 O O7 NAG . . . E 5 39.113 -1.902 15.393 1 77.26 ? O7 NAG 1259 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#