data_4AYV
#
_model_server_result.job_id            ez29A5h1Sz8YjqIdT9XyiQ 
_model_server_result.datetime_utc      '2024-11-24 06:40:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ayv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1260}' 
#
_entry.id    4AYV 
#
_exptl.entry_id    4AYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AYV 
_cell.length_a            90.8 
_cell.length_b            90.8 
_cell.length_c            132.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 9 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 B SG CYS 173 B CYS 173 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 B SG CYS 201 B CYS 201 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B ND2 ASN 53 B ASN 53 1_555 E C1 NAG . B NAG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
metalc ? metalc1 B O ARG 233 B ARG 233 1_555 F NA NA . B NA 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc2 B O LYS 236 B LYS 236 1_555 F NA NA . B NA 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc3 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc4 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? 
metalc ? metalc5 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc6 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4AYV 
_atom_sites.fract_transf_matrix[1][1]    0.011013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 9MQ B 1 1258 1258 9MQ 9MQ . 
E 5 NAG B 1 1259 1259 NAG NAG . 
F 6 NA B 1 1260 1260 NA NA . 
G 7 HOH A 1 2001 2001 HOH HOH . 
G 7 HOH A 2 2002 2002 HOH HOH . 
G 7 HOH A 3 2003 2003 HOH HOH . 
G 7 HOH A 4 2004 2004 HOH HOH . 
G 7 HOH A 5 2005 2005 HOH HOH . 
H 7 HOH B 1 2001 2001 HOH HOH . 
H 7 HOH B 2 2002 2002 HOH HOH . 
H 7 HOH B 3 2003 2003 HOH HOH . 
H 7 HOH B 4 2004 2004 HOH HOH . 
H 7 HOH B 5 2005 2005 HOH HOH . 
H 7 HOH B 6 2006 2006 HOH HOH . 
H 7 HOH B 7 2007 2007 HOH HOH . 
H 7 HOH B 8 2008 2008 HOH HOH . 
H 7 HOH B 9 2009 2009 HOH HOH . 
H 7 HOH B 10 2010 2010 HOH HOH . 
H 7 HOH B 11 2011 2011 HOH HOH . 
H 7 HOH B 12 2012 2012 HOH HOH . 
H 7 HOH B 13 2013 2013 HOH HOH . 
H 7 HOH B 14 2014 2014 HOH HOH . 
H 7 HOH B 15 2015 2015 HOH HOH . 
H 7 HOH B 16 2016 2016 HOH HOH . 
H 7 HOH B 17 2017 2017 HOH HOH . 
H 7 HOH B 18 2018 2018 HOH HOH . 
H 7 HOH B 19 2019 2019 HOH HOH . 
H 7 HOH B 20 2020 2020 HOH HOH . 
H 7 HOH B 21 2021 2021 HOH HOH . 
H 7 HOH B 22 2022 2022 HOH HOH . 
H 7 HOH B 23 2023 2023 HOH HOH . 
H 7 HOH B 24 2024 2024 HOH HOH . 
H 7 HOH B 25 2025 2025 HOH HOH . 
H 7 HOH B 26 2026 2026 HOH HOH . 
H 7 HOH B 27 2027 2027 HOH HOH . 
H 7 HOH B 28 2028 2028 HOH HOH . 
H 7 HOH B 29 2029 2029 HOH HOH . 
H 7 HOH B 30 2030 2030 HOH HOH . 
H 7 HOH B 31 2031 2031 HOH HOH . 
H 7 HOH B 32 2032 2032 HOH HOH . 
H 7 HOH B 33 2033 2033 HOH HOH . 
H 7 HOH B 34 2034 2034 HOH HOH . 
H 7 HOH B 35 2035 2035 HOH HOH . 
H 7 HOH B 36 2036 2036 HOH HOH . 
H 7 HOH B 37 2037 2037 HOH HOH . 
H 7 HOH B 38 2038 2038 HOH HOH . 
H 7 HOH B 39 2039 2039 HOH HOH . 
H 7 HOH B 40 2040 2040 HOH HOH . 
H 7 HOH B 41 2041 2041 HOH HOH . 
H 7 HOH B 42 2042 2042 HOH HOH . 
H 7 HOH B 43 2043 2043 HOH HOH . 
H 7 HOH B 44 2044 2044 HOH HOH . 
H 7 HOH B 45 2045 2045 HOH HOH . 
H 7 HOH B 46 2046 2046 HOH HOH . 
H 7 HOH B 47 2047 2047 HOH HOH . 
H 7 HOH B 48 2048 2048 HOH HOH . 
H 7 HOH B 49 2049 2049 HOH HOH . 
H 7 HOH B 50 2050 2050 HOH HOH . 
H 7 HOH B 51 2051 2051 HOH HOH . 
I 7 HOH D 1 2001 2001 HOH HOH . 
I 7 HOH D 2 2002 2002 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               29.743 
_atom_site.Cartn_y               24.991 
_atom_site.Cartn_z               32.773 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.14 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1260 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#