data_4AYW # _model_server_result.job_id actZ17LTCco-6PRR2eKwOg _model_server_result.datetime_utc '2024-11-23 17:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ayw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1719}' # _entry.id 4AYW # _exptl.entry_id 4AYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AYW _cell.length_a 101.7 _cell.length_b 101.7 _cell.length_c 294.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -50.85 88.074784 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4AYW _atom_sites.fract_transf_matrix[1][1] 0.009833 _atom_sites.fract_transf_matrix[1][2] 0.005677 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 1719 1719 ANP ANP . C 3 LMT A 1 1724 1724 LMT LMT . D 4 Y01 A 1 1730 1730 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -26.997 38.881 21.415 1 210.86 ? PG ANP 1719 A 1 HETATM 2 O O1G ANP . . . B 2 -27.062 39.577 20.11 1 210.84 ? O1G ANP 1719 A 1 HETATM 3 O O2G ANP . . . B 2 -27.963 37.641 21.633 1 210.99 ? O2G ANP 1719 A 1 HETATM 4 O O3G ANP . . . B 2 -27.585 39.768 22.596 1 210.8 ? O3G ANP 1719 A 1 HETATM 5 P PB ANP . . . B 2 -24.75 36.873 21.908 1 210.38 ? PB ANP 1719 A 1 HETATM 6 O O1B ANP . . . B 2 -24.404 36.39 23.255 1 210.33 ? O1B ANP 1719 A 1 HETATM 7 O O2B ANP . . . B 2 -25.716 35.904 21.11 1 210.4 ? O2B ANP 1719 A 1 HETATM 8 N N3B ANP . . . B 2 -25.476 38.361 21.849 1 210.62 ? N3B ANP 1719 A 1 HETATM 9 P PA ANP . . . B 2 -22.882 36.255 19.532 1 210.8 ? PA ANP 1719 A 1 HETATM 10 O O1A ANP . . . B 2 -22.766 34.78 19.525 1 210.62 ? O1A ANP 1719 A 1 HETATM 11 O O2A ANP . . . B 2 -23.729 36.897 18.432 1 210.84 ? O2A ANP 1719 A 1 HETATM 12 O O3A ANP . . . B 2 -23.596 36.815 20.829 1 210.47 ? O3A ANP 1719 A 1 HETATM 13 O O5' ANP . . . B 2 -21.449 36.978 19.309 1 211.49 ? O5' ANP 1719 A 1 HETATM 14 C C5' ANP . . . B 2 -21.12 38.292 19.809 1 212.11 ? C5' ANP 1719 A 1 HETATM 15 C C4' ANP . . . B 2 -20.832 39.224 18.657 1 212.64 ? C4' ANP 1719 A 1 HETATM 16 O O4' ANP . . . B 2 -20.102 38.528 17.626 1 212.92 ? O4' ANP 1719 A 1 HETATM 17 C C3' ANP . . . B 2 -22.047 39.801 17.943 1 212.71 ? C3' ANP 1719 A 1 HETATM 18 O O3' ANP . . . B 2 -22.581 40.918 18.645 1 212.65 ? O3' ANP 1719 A 1 HETATM 19 C C2' ANP . . . B 2 -21.479 40.173 16.568 1 212.77 ? C2' ANP 1719 A 1 HETATM 20 O O2' ANP . . . B 2 -20.961 41.498 16.51 1 212.62 ? O2' ANP 1719 A 1 HETATM 21 C C1' ANP . . . B 2 -20.36 39.134 16.371 1 212.97 ? C1' ANP 1719 A 1 HETATM 22 N N9 ANP . . . B 2 -20.649 38.089 15.388 1 213.07 ? N9 ANP 1719 A 1 HETATM 23 C C8 ANP . . . B 2 -21.69 37.196 15.399 1 213.01 ? C8 ANP 1719 A 1 HETATM 24 N N7 ANP . . . B 2 -21.711 36.387 14.367 1 212.97 ? N7 ANP 1719 A 1 HETATM 25 C C5 ANP . . . B 2 -20.604 36.77 13.625 1 212.97 ? C5 ANP 1719 A 1 HETATM 26 C C6 ANP . . . B 2 -20.066 36.302 12.407 1 212.68 ? C6 ANP 1719 A 1 HETATM 27 N N6 ANP . . . B 2 -20.605 35.315 11.688 1 212.43 ? N6 ANP 1719 A 1 HETATM 28 N N1 ANP . . . B 2 -18.942 36.9 11.943 1 212.69 ? N1 ANP 1719 A 1 HETATM 29 C C2 ANP . . . B 2 -18.405 37.9 12.652 1 212.9 ? C2 ANP 1719 A 1 HETATM 30 N N3 ANP . . . B 2 -18.823 38.426 13.809 1 213.08 ? N3 ANP 1719 A 1 HETATM 31 C C4 ANP . . . B 2 -19.936 37.815 14.245 1 213.11 ? C4 ANP 1719 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #