data_4AYX # _model_server_result.job_id mz6Hzv7ogL7-3ljg27Yw7Q _model_server_result.datetime_utc '2024-11-13 04:47:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ayx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1720}' # _entry.id 4AYX # _exptl.entry_id 4AYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AYX _cell.length_a 180.136 _cell.length_b 180.136 _cell.length_c 50.565 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 16.855 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 384 A SER 534 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc2 A OE1 GLN 425 A GLN 575 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc3 C MG MG . A MG 801 1_555 D O2B ACP . A ACP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc4 C MG MG . A MG 801 1_555 D O3G ACP . A ACP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 500 n n C1B O1B LMT sing 501 n n C1B O5B LMT sing 502 n n C1B H1B LMT sing 503 n n C2B C3B LMT sing 504 n n C2B O2B LMT sing 505 n n C2B H2B LMT sing 506 n n C3B C4B LMT sing 507 n n C3B O3B LMT sing 508 n n C3B H3B LMT sing 509 n n C4B C5B LMT sing 510 n n C4B O4' LMT sing 511 n n C4B H4B LMT sing 512 n n C5B C6B LMT sing 513 n n C5B O5B LMT sing 514 n n C5B H5B LMT sing 515 n n C6B O6B LMT sing 516 n n C6B "H6'2" LMT sing 517 n n C6B "H6'1" LMT sing 518 n n O1B C4' LMT sing 519 n n O2B H2O1 LMT sing 520 n n O3B H3O1 LMT sing 521 n n O4' H4O1 LMT sing 522 n n O6B H6B LMT sing 523 n n C1' C2' LMT sing 524 n n C1' O1' LMT sing 525 n n C1' O5' LMT sing 526 n n C1' H1' LMT sing 527 n n C2' C3' LMT sing 528 n n C2' O2' LMT sing 529 n n C2' H2' LMT sing 530 n n C3' C4' LMT sing 531 n n C3' O3' LMT sing 532 n n C3' H3' LMT sing 533 n n C4' C5' LMT sing 534 n n C4' H4' LMT sing 535 n n C5' C6' LMT sing 536 n n C5' O5' LMT sing 537 n n C5' H5' LMT sing 538 n n C6' O6' LMT sing 539 n n C6' H6D LMT sing 540 n n C6' H6E LMT sing 541 n n O1' C1 LMT sing 542 n n O2' H2O2 LMT sing 543 n n O3' H3O2 LMT sing 544 n n O6' H6' LMT sing 545 n n C1 C2 LMT sing 546 n n C1 H12 LMT sing 547 n n C1 H11 LMT sing 548 n n C2 C3 LMT sing 549 n n C2 H22 LMT sing 550 n n C2 H21 LMT sing 551 n n C3 C4 LMT sing 552 n n C3 H32 LMT sing 553 n n C3 H31 LMT sing 554 n n C4 C5 LMT sing 555 n n C4 H42 LMT sing 556 n n C4 H41 LMT sing 557 n n C5 C6 LMT sing 558 n n C5 H52 LMT sing 559 n n C5 H51 LMT sing 560 n n C6 C7 LMT sing 561 n n C6 H62 LMT sing 562 n n C6 H61 LMT sing 563 n n C7 C8 LMT sing 564 n n C7 H72 LMT sing 565 n n C7 H71 LMT sing 566 n n C8 C9 LMT sing 567 n n C8 H82 LMT sing 568 n n C8 H81 LMT sing 569 n n C9 C10 LMT sing 570 n n C9 H92 LMT sing 571 n n C9 H91 LMT sing 572 n n C10 C11 LMT sing 573 n n C10 H102 LMT sing 574 n n C10 H101 LMT sing 575 n n C11 C12 LMT sing 576 n n C11 H112 LMT sing 577 n n C11 H111 LMT sing 578 n n C12 H123 LMT sing 579 n n C12 H122 LMT sing 580 n n C12 H121 LMT sing 581 n n # _atom_sites.entry_id 4AYX _atom_sites.fract_transf_matrix[1][1] 0.005551 _atom_sites.fract_transf_matrix[1][2] 0.003205 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 1717 1717 GLY GLY . C 3 MG A 1 801 801 MG MG . D 4 ACP A 1 900 900 ACP ACP . E 5 LMT A 1 1720 1720 LMT LMT . F 6 CDL A 1 1721 1721 CDL CDL . G 5 LMT A 1 1724 1724 LMT LMT . H 6 CDL A 1 1726 1726 CDL CDL . I 7 HOH A 1 2001 2001 HOH HOH . I 7 HOH A 2 2002 2002 HOH HOH . I 7 HOH A 3 2003 2003 HOH HOH . I 7 HOH A 4 2004 2004 HOH HOH . I 7 HOH A 5 2005 2005 HOH HOH . I 7 HOH A 6 2006 2006 HOH HOH . I 7 HOH A 7 2007 2007 HOH HOH . I 7 HOH A 8 2008 2008 HOH HOH . I 7 HOH A 9 2009 2009 HOH HOH . I 7 HOH A 10 2010 2010 HOH HOH . I 7 HOH A 11 2011 2011 HOH HOH . I 7 HOH A 12 2012 2012 HOH HOH . I 7 HOH A 13 2013 2013 HOH HOH . I 7 HOH A 14 2014 2014 HOH HOH . I 7 HOH A 15 2015 2015 HOH HOH . I 7 HOH A 16 2016 2016 HOH HOH . I 7 HOH A 17 2017 2017 HOH HOH . I 7 HOH A 18 2018 2018 HOH HOH . I 7 HOH A 19 2019 2019 HOH HOH . I 7 HOH A 20 2020 2020 HOH HOH . I 7 HOH A 21 2021 2021 HOH HOH . I 7 HOH A 22 2022 2022 HOH HOH . I 7 HOH A 23 2023 2023 HOH HOH . I 7 HOH A 24 2024 2024 HOH HOH . I 7 HOH A 25 2025 2025 HOH HOH . I 7 HOH A 26 2026 2026 HOH HOH . I 7 HOH A 27 2027 2027 HOH HOH . I 7 HOH A 28 2028 2028 HOH HOH . I 7 HOH A 29 2029 2029 HOH HOH . I 7 HOH A 30 2030 2030 HOH HOH . I 7 HOH A 31 2031 2031 HOH HOH . I 7 HOH A 32 2032 2032 HOH HOH . I 7 HOH A 33 2033 2033 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . E 5 -63.546 104.831 0.158 1 121.7 ? C1B LMT 1720 A 1 HETATM 2 C C2B LMT . . . E 5 -64.813 105.652 -0.065 1 121.63 ? C2B LMT 1720 A 1 HETATM 3 C C3B LMT . . . E 5 -65.298 106.244 1.257 1 123.58 ? C3B LMT 1720 A 1 HETATM 4 C C4B LMT . . . E 5 -65.418 105.18 2.349 1 124.46 ? C4B LMT 1720 A 1 HETATM 5 C C5B LMT . . . E 5 -64.157 104.316 2.427 1 124.45 ? C5B LMT 1720 A 1 HETATM 6 C C6B LMT . . . E 5 -64.309 103.108 3.322 1 124.13 ? C6B LMT 1720 A 1 HETATM 7 O O1B LMT . . . E 5 -62.506 105.693 0.583 1 119.84 ? O1B LMT 1720 A 1 HETATM 8 O O2B LMT . . . E 5 -64.578 106.682 -1.017 1 119.88 ? O2B LMT 1720 A 1 HETATM 9 O O3B LMT . . . E 5 -66.551 106.894 1.071 1 123.78 ? O3B LMT 1720 A 1 HETATM 10 O O4' LMT . . . E 5 -65.609 105.831 3.602 1 124.22 ? O4' LMT 1720 A 1 HETATM 11 O O5B LMT . . . E 5 -63.793 103.82 1.125 1 123.39 ? O5B LMT 1720 A 1 HETATM 12 O O6B LMT . . . E 5 -63.058 102.478 3.559 1 123.82 ? O6B LMT 1720 A 1 HETATM 13 C C1' LMT . . . E 5 -58.421 106.303 -0.178 1 113.59 ? C1' LMT 1720 A 1 HETATM 14 C C2' LMT . . . E 5 -59.407 106.547 -1.316 1 114.97 ? C2' LMT 1720 A 1 HETATM 15 C C3' LMT . . . E 5 -60.822 106.701 -0.777 1 116.72 ? C3' LMT 1720 A 1 HETATM 16 C C4' LMT . . . E 5 -61.187 105.479 0.057 1 118.27 ? C4' LMT 1720 A 1 HETATM 17 C C5' LMT . . . E 5 -60.157 105.284 1.172 1 118.26 ? C5' LMT 1720 A 1 HETATM 18 C C6' LMT . . . E 5 -60.365 104.043 2.014 1 119.06 ? C6' LMT 1720 A 1 HETATM 19 O O1' LMT . . . E 5 -57.171 106.066 -0.76 1 109.5 ? O1' LMT 1720 A 1 HETATM 20 O O2' LMT . . . E 5 -59.024 107.697 -2.06 1 115.63 ? O2' LMT 1720 A 1 HETATM 21 O O3' LMT . . . E 5 -61.729 106.896 -1.855 1 117.28 ? O3' LMT 1720 A 1 HETATM 22 O O5' LMT . . . E 5 -58.832 105.192 0.614 1 116.59 ? O5' LMT 1720 A 1 HETATM 23 O O6' LMT . . . E 5 -60.3 102.842 1.252 1 119.7 ? O6' LMT 1720 A 1 HETATM 24 C C1 LMT . . . E 5 -56.08 106.009 0.155 1 107.07 ? C1 LMT 1720 A 1 HETATM 25 C C2 LMT . . . E 5 -55.107 105.021 -0.424 1 105.5 ? C2 LMT 1720 A 1 HETATM 26 C C3 LMT . . . E 5 -53.725 105.571 -0.661 1 104.04 ? C3 LMT 1720 A 1 HETATM 27 C C4 LMT . . . E 5 -52.668 104.96 0.237 1 103.94 ? C4 LMT 1720 A 1 HETATM 28 C C5 LMT . . . E 5 -52.162 103.605 -0.236 1 104.61 ? C5 LMT 1720 A 1 HETATM 29 C C6 LMT . . . E 5 -51.788 102.647 0.889 1 103.62 ? C6 LMT 1720 A 1 HETATM 30 C C7 LMT . . . E 5 -51.415 101.25 0.407 1 101.44 ? C7 LMT 1720 A 1 HETATM 31 C C8 LMT . . . E 5 -51.119 100.255 1.519 1 100.71 ? C8 LMT 1720 A 1 HETATM 32 C C9 LMT . . . E 5 -49.832 100.515 2.318 1 100.49 ? C9 LMT 1720 A 1 HETATM 33 C C10 LMT . . . E 5 -48.542 100.143 1.598 1 100.58 ? C10 LMT 1720 A 1 HETATM 34 C C11 LMT . . . E 5 -47.279 100.418 2.395 1 99.79 ? C11 LMT 1720 A 1 HETATM 35 C C12 LMT . . . E 5 -46.018 100.044 1.667 1 98.08 ? C12 LMT 1720 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #