data_4AYY
#
_model_server_result.job_id            OcOd_MHklC9m4zduRGTLBQ 
_model_server_result.datetime_utc      '2024-11-28 02:20:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ayy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1258}' 
#
_entry.id    4AYY 
#
_exptl.entry_id    4AYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              586.703 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(R)-1-[(S)-3-[((S)-1-Carbamimidoyl-piperidin-3-ylmethyl)-carbamoyl]-2-(naphthalene-2-sulfonylamino)-propionyl]-4-methyl-piperidine-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AYY 
_cell.length_a            90.8 
_cell.length_b            90.8 
_cell.length_c            132.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 9 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 173 B CYS 173 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 B SG CYS 201 B CYS 201 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
covale ? covale1 B ND2 ASN 53 B ASN 53 1_555 E C1 NAG . B NAG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
metalc ? metalc1 B O ARG 233 B ARG 233 1_555 F NA NA . B NA 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc2 B O LYS 236 B LYS 236 1_555 F NA NA . B NA 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc3 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? 
metalc ? metalc5 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc6 F NA NA . B NA 1260 1_555 H O HOH . B HOH 2061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
#
_chem_comp.formula           'C28 H38 N6 O6 S' 
_chem_comp.formula_weight    586.703 
_chem_comp.id                9MX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(R)-1-[(S)-3-[((S)-1-Carbamimidoyl-piperidin-3-ylmethyl)-carbamoyl]-2-(naphthalene-2-sulfonylamino)-propionyl]-4-methyl-piperidine-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C1 9MX sing 1 n n 
C2 C1 9MX sing 2 n n 
C1 N3 9MX sing 3 n n 
C1 H1 9MX sing 4 n n 
N5 C2 9MX sing 5 n n 
C2 O6 9MX doub 6 n n 
N3 S7 9MX sing 7 n n 
N3 HN3 9MX sing 8 n n 
C4 C8 9MX sing 9 n n 
C4 H4 9MX sing 10 n n 
C4 H4A 9MX sing 11 n n 
C21 N5 9MX sing 12 n n 
C9 N5 9MX sing 13 n n 
O12 S7 9MX doub 14 n n 
S7 C11 9MX sing 15 n n 
S7 O13 9MX doub 16 n n 
N14 C8 9MX sing 17 n n 
C8 O15 9MX doub 18 n n 
C16 C9 9MX sing 19 n n 
C9 H9 9MX sing 20 n n 
C9 H9A 9MX sing 21 n n 
C10 C29 9MX sing 22 n n 
C10 C28 9MX sing 23 n n 
C10 C16 9MX sing 24 n n 
C10 H10 9MX sing 25 n n 
C18 C11 9MX doub 26 n y 
C11 C19 9MX sing 27 n y 
C20 N14 9MX sing 28 n n 
N14 HN14 9MX sing 29 n n 
C16 H16 9MX sing 30 n n 
C16 H16A 9MX sing 31 n n 
O23 C17 9MX doub 32 n n 
O24 C17 9MX sing 33 n n 
C17 C21 9MX sing 34 n n 
C18 C25 9MX sing 35 n y 
C18 H18 9MX sing 36 n n 
C19 C26 9MX doub 37 n y 
C19 H19 9MX sing 38 n n 
C20 C27 9MX sing 39 n n 
C20 H20 9MX sing 40 n n 
C20 H20A 9MX sing 41 n n 
C28 C21 9MX sing 42 n n 
C21 H21 9MX sing 43 n n 
O24 HO24 9MX sing 44 n n 
C31 C25 9MX doub 45 n y 
C25 C30 9MX sing 46 n y 
C30 C26 9MX sing 47 n y 
C26 H26 9MX sing 48 n n 
C33 C27 9MX sing 49 n n 
C27 C32 9MX sing 50 n n 
C27 H27 9MX sing 51 n n 
C28 H28 9MX sing 52 n n 
C28 H28A 9MX sing 53 n n 
C29 H29 9MX sing 54 n n 
C29 H29A 9MX sing 55 n n 
C29 H29B 9MX sing 56 n n 
C30 C35 9MX doub 57 n y 
C31 C36 9MX sing 58 n y 
C31 H31 9MX sing 59 n n 
C32 N37 9MX sing 60 n n 
C32 H32 9MX sing 61 n n 
C32 H32A 9MX sing 62 n n 
C33 C38 9MX sing 63 n n 
C33 H33 9MX sing 64 n n 
C33 H33A 9MX sing 65 n n 
C39 C35 9MX sing 66 n y 
C35 H35 9MX sing 67 n n 
C36 C39 9MX doub 68 n y 
C36 H36 9MX sing 69 n n 
C40 N37 9MX sing 70 n n 
N37 C41 9MX sing 71 n n 
C38 C40 9MX sing 72 n n 
C38 H38 9MX sing 73 n n 
C38 H38A 9MX sing 74 n n 
C39 H39 9MX sing 75 n n 
C40 H40 9MX sing 76 n n 
C40 H40A 9MX sing 77 n n 
C41 N43 9MX doub 78 n n 
C41 N42 9MX sing 79 n n 
N42 HN42 9MX sing 80 n n 
N42 HN4A 9MX sing 81 n n 
N43 HN43 9MX sing 82 n n 
#
_atom_sites.entry_id                     4AYY 
_atom_sites.fract_transf_matrix[1][1]    0.011013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 9MX B 1 1258 1258 9MX 9MX . 
E 5 NAG B 1 1259 1259 NAG NAG . 
F 6 NA B 1 1260 1260 NA NA . 
G 7 HOH A 1 2001 2001 HOH HOH . 
G 7 HOH A 2 2002 2002 HOH HOH . 
G 7 HOH A 3 2003 2003 HOH HOH . 
G 7 HOH A 4 2004 2004 HOH HOH . 
G 7 HOH A 5 2005 2005 HOH HOH . 
G 7 HOH A 6 2006 2006 HOH HOH . 
G 7 HOH A 7 2007 2007 HOH HOH . 
H 7 HOH B 1 2001 2001 HOH HOH . 
H 7 HOH B 2 2002 2002 HOH HOH . 
H 7 HOH B 3 2003 2003 HOH HOH . 
H 7 HOH B 4 2004 2004 HOH HOH . 
H 7 HOH B 5 2005 2005 HOH HOH . 
H 7 HOH B 6 2006 2006 HOH HOH . 
H 7 HOH B 7 2007 2007 HOH HOH . 
H 7 HOH B 8 2008 2008 HOH HOH . 
H 7 HOH B 9 2009 2009 HOH HOH . 
H 7 HOH B 10 2010 2010 HOH HOH . 
H 7 HOH B 11 2011 2011 HOH HOH . 
H 7 HOH B 12 2012 2012 HOH HOH . 
H 7 HOH B 13 2013 2013 HOH HOH . 
H 7 HOH B 14 2014 2014 HOH HOH . 
H 7 HOH B 15 2015 2015 HOH HOH . 
H 7 HOH B 16 2016 2016 HOH HOH . 
H 7 HOH B 17 2017 2017 HOH HOH . 
H 7 HOH B 18 2018 2018 HOH HOH . 
H 7 HOH B 19 2019 2019 HOH HOH . 
H 7 HOH B 20 2020 2020 HOH HOH . 
H 7 HOH B 21 2021 2021 HOH HOH . 
H 7 HOH B 22 2022 2022 HOH HOH . 
H 7 HOH B 23 2023 2023 HOH HOH . 
H 7 HOH B 24 2024 2024 HOH HOH . 
H 7 HOH B 25 2025 2025 HOH HOH . 
H 7 HOH B 26 2026 2026 HOH HOH . 
H 7 HOH B 27 2027 2027 HOH HOH . 
H 7 HOH B 28 2028 2028 HOH HOH . 
H 7 HOH B 29 2029 2029 HOH HOH . 
H 7 HOH B 30 2030 2030 HOH HOH . 
H 7 HOH B 31 2031 2031 HOH HOH . 
H 7 HOH B 32 2032 2032 HOH HOH . 
H 7 HOH B 33 2033 2033 HOH HOH . 
H 7 HOH B 34 2034 2034 HOH HOH . 
H 7 HOH B 35 2035 2035 HOH HOH . 
H 7 HOH B 36 2036 2036 HOH HOH . 
H 7 HOH B 37 2037 2037 HOH HOH . 
H 7 HOH B 38 2038 2038 HOH HOH . 
H 7 HOH B 39 2039 2039 HOH HOH . 
H 7 HOH B 40 2040 2040 HOH HOH . 
H 7 HOH B 41 2041 2041 HOH HOH . 
H 7 HOH B 42 2042 2042 HOH HOH . 
H 7 HOH B 43 2043 2043 HOH HOH . 
H 7 HOH B 44 2044 2044 HOH HOH . 
H 7 HOH B 45 2045 2045 HOH HOH . 
H 7 HOH B 46 2046 2046 HOH HOH . 
H 7 HOH B 47 2047 2047 HOH HOH . 
H 7 HOH B 48 2048 2048 HOH HOH . 
H 7 HOH B 49 2049 2049 HOH HOH . 
H 7 HOH B 50 2050 2050 HOH HOH . 
H 7 HOH B 51 2051 2051 HOH HOH . 
H 7 HOH B 52 2052 2052 HOH HOH . 
H 7 HOH B 53 2053 2053 HOH HOH . 
H 7 HOH B 54 2054 2054 HOH HOH . 
H 7 HOH B 55 2055 2055 HOH HOH . 
H 7 HOH B 56 2056 2056 HOH HOH . 
H 7 HOH B 57 2057 2057 HOH HOH . 
H 7 HOH B 58 2058 2058 HOH HOH . 
H 7 HOH B 59 2059 2059 HOH HOH . 
H 7 HOH B 60 2060 2060 HOH HOH . 
H 7 HOH B 61 2061 2061 HOH HOH . 
I 7 HOH D 1 2001 2001 HOH HOH . 
I 7 HOH D 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 9MX . . . D 4 29.564 17.73 23.491 1 49.2 ? C20 9MX 1258 B 1 
HETATM 2 C C27 9MX . . . D 4 30.953 18.384 23.624 1 48.58 ? C27 9MX 1258 B 1 
HETATM 3 C C32 9MX . . . D 4 31.389 18.368 25.091 1 49.04 ? C32 9MX 1258 B 1 
HETATM 4 C C33 9MX . . . D 4 31.996 17.688 22.753 1 47.3 ? C33 9MX 1258 B 1 
HETATM 5 N N37 9MX . . . D 4 32.674 18.993 25.352 1 49.96 ? N37 9MX 1258 B 1 
HETATM 6 C C38 9MX . . . D 4 33.413 18.087 23.116 1 45.15 ? C38 9MX 1258 B 1 
HETATM 7 C C40 9MX . . . D 4 33.467 19.201 24.153 1 46.59 ? C40 9MX 1258 B 1 
HETATM 8 C C41 9MX . . . D 4 32.585 20.097 26.313 1 53.54 ? C41 9MX 1258 B 1 
HETATM 9 N N43 9MX . . . D 4 31.267 20.312 26.837 1 53.16 ? N43 9MX 1258 B 1 
HETATM 10 N N42 9MX . . . D 4 33.63 20.803 26.666 1 58.11 ? N42 9MX 1258 B 1 
HETATM 11 N N3 9MX . . . D 4 29.47 13.437 26.614 1 84.76 ? N3 9MX 1258 B 1 
HETATM 12 C C1 9MX . . . D 4 29.673 13.34 25.193 1 76.75 ? C1 9MX 1258 B 1 
HETATM 13 C C2 9MX . . . D 4 31.143 13.746 24.833 1 78.1 ? C2 9MX 1258 B 1 
HETATM 14 O O6 9MX . . . D 4 31.737 14.635 25.48 1 73.76 ? O6 9MX 1258 B 1 
HETATM 15 C C4 9MX . . . D 4 28.626 14.09 24.303 1 66.52 ? C4 9MX 1258 B 1 
HETATM 16 C C8 9MX . . . D 4 28.661 15.622 24.347 1 58.34 ? C8 9MX 1258 B 1 
HETATM 17 O O15 9MX . . . D 4 27.917 16.247 25.143 1 56.19 ? O15 9MX 1258 B 1 
HETATM 18 N N14 9MX . . . D 4 29.503 16.297 23.493 1 51.45 ? N14 9MX 1258 B 1 
HETATM 19 S S7 9MX . . . D 4 29.159 12.207 27.645 1 88.18 ? S7 9MX 1258 B 1 
HETATM 20 O O12 9MX . . . D 4 28.827 12.787 28.898 1 82.63 ? O12 9MX 1258 B 1 
HETATM 21 O O13 9MX . . . D 4 28.217 11.352 27.033 1 89.58 ? O13 9MX 1258 B 1 
HETATM 22 C C18 9MX . . . D 4 30.772 10.093 27.26 1 79.79 ? C18 9MX 1258 B 1 
HETATM 23 C C11 9MX . . . D 4 30.584 11.324 27.861 1 83.03 ? C11 9MX 1258 B 1 
HETATM 24 C C19 9MX . . . D 4 31.607 11.841 28.706 1 78.93 ? C19 9MX 1258 B 1 
HETATM 25 C C26 9MX . . . D 4 32.77 11.152 28.924 1 78.02 ? C26 9MX 1258 B 1 
HETATM 26 C C35 9MX . . . D 4 34.173 9.151 28.515 1 76.5 ? C35 9MX 1258 B 1 
HETATM 27 C C39 9MX . . . D 4 34.336 7.929 27.9 1 81.66 ? C39 9MX 1258 B 1 
HETATM 28 C C36 9MX . . . D 4 33.331 7.382 27.06 1 81.73 ? C36 9MX 1258 B 1 
HETATM 29 C C31 9MX . . . D 4 32.168 8.083 26.847 1 84.35 ? C31 9MX 1258 B 1 
HETATM 30 C C25 9MX . . . D 4 31.965 9.353 27.465 1 82.47 ? C25 9MX 1258 B 1 
HETATM 31 C C30 9MX . . . D 4 32.979 9.891 28.308 1 79.05 ? C30 9MX 1258 B 1 
HETATM 32 N N5 9MX . . . D 4 31.781 13.084 23.8 1 79.76 ? N5 9MX 1258 B 1 
HETATM 33 C C21 9MX . . . D 4 31.025 12.41 22.761 1 82.86 ? C21 9MX 1258 B 1 
HETATM 34 C C28 9MX . . . D 4 31.549 10.983 22.504 1 82.17 ? C28 9MX 1258 B 1 
HETATM 35 C C10 9MX . . . D 4 33.065 10.909 22.334 1 81 ? C10 9MX 1258 B 1 
HETATM 36 C C16 9MX . . . D 4 33.823 11.788 23.32 1 77.8 ? C16 9MX 1258 B 1 
HETATM 37 C C9 9MX . . . D 4 33.194 13.171 23.497 1 78.24 ? C9 9MX 1258 B 1 
HETATM 38 C C17 9MX . . . D 4 30.937 13.214 21.466 1 87.64 ? C17 9MX 1258 B 1 
HETATM 39 O O23 9MX . . . D 4 31.135 12.468 20.338 1 89.81 ? O23 9MX 1258 B 1 
HETATM 40 O O24 9MX . . . D 4 30.718 14.43 21.334 1 85.72 ? O24 9MX 1258 B 1 
HETATM 41 C C29 9MX . . . D 4 33.529 9.47 22.458 1 79.46 ? C29 9MX 1258 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           41 
#