data_4AZ2 # _model_server_result.job_id nSSqYC1UocmiP-NU2IWcgQ _model_server_result.datetime_utc '2024-10-12 16:30:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4az2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1258}' # _entry.id 4AZ2 # _exptl.entry_id 4AZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.621 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-N-((S)-1-CARBAMIMIDOYL-PIPERIDIN-3-YLMETHYL)-2-(NAPHTHALENE-2-SULFONYLAMINO)-3-PHENYL-PROPIONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AZ2 _cell.length_a 90.8 _cell.length_b 90.8 _cell.length_c 132.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 9 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 173 B CYS 173 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 201 B CYS 201 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 B ND2 ASN 53 B ASN 53 1_555 E C1 NAG . B NAG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C26 H31 N5 O3 S' _chem_comp.formula_weight 493.621 _chem_comp.id 9MU _chem_comp.mon_nstd_flag . _chem_comp.name (R)-N-((S)-1-CARBAMIMIDOYL-PIPERIDIN-3-YLMETHYL)-2-(NAPHTHALENE-2-SULFONYLAMINO)-3-PHENYL-PROPIONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 9MU sing 1 n y C1 C3 9MU doub 2 n y C1 C4 9MU sing 3 n y C2 C5 9MU doub 4 n y C2 C6 9MU sing 5 n y C3 C7 9MU sing 6 n y C4 C8 9MU doub 7 n y C5 C9 9MU sing 8 n y C6 C10 9MU doub 9 n y C7 C9 9MU doub 10 n y C7 S11 9MU sing 11 n n C8 C10 9MU sing 12 n y S11 N12 9MU sing 13 n n S11 O13 9MU doub 14 n n S11 O14 9MU doub 15 n n N12 C15 9MU sing 16 n n C15 C16 9MU sing 17 n n C15 C17 9MU sing 18 n n C16 C18 9MU sing 19 n n C17 N19 9MU sing 20 n n C17 O20 9MU doub 21 n n C18 C21 9MU sing 22 n y C18 C22 9MU doub 23 n y N19 C23 9MU sing 24 n n C21 C24 9MU doub 25 n y C22 C25 9MU sing 26 n y C23 C26 9MU sing 27 n n C24 C27 9MU sing 28 n y C25 C27 9MU doub 29 n y C26 C28 9MU sing 30 n n C26 C29 9MU sing 31 n n C28 N30 9MU sing 32 n n C29 C31 9MU sing 33 n n N30 C32 9MU sing 34 n n N30 C33 9MU sing 35 n n C31 C32 9MU sing 36 n n C33 N34 9MU sing 37 n n C33 N35 9MU doub 38 n n C3 H3 9MU sing 39 n n C4 H4 9MU sing 40 n n C5 H5 9MU sing 41 n n C6 H6 9MU sing 42 n n C8 H8 9MU sing 43 n n C9 H9 9MU sing 44 n n C10 H10 9MU sing 45 n n N12 H12 9MU sing 46 n n C15 H15 9MU sing 47 n n C16 H161 9MU sing 48 n n C16 H162 9MU sing 49 n n N19 H19 9MU sing 50 n n C21 H21 9MU sing 51 n n C22 H22 9MU sing 52 n n C23 H231 9MU sing 53 n n C23 H232 9MU sing 54 n n C24 H24 9MU sing 55 n n C25 H25 9MU sing 56 n n C26 H26 9MU sing 57 n n C27 H27 9MU sing 58 n n C28 H281 9MU sing 59 n n C28 H282 9MU sing 60 n n C29 H291 9MU sing 61 n n C29 H292 9MU sing 62 n n C31 H311 9MU sing 63 n n C31 H312 9MU sing 64 n n C32 H321 9MU sing 65 n n C32 H322 9MU sing 66 n n N34 H341 9MU sing 67 n n N34 H342 9MU sing 68 n n N35 H35 9MU sing 69 n n # _atom_sites.entry_id 4AZ2 _atom_sites.fract_transf_matrix[1][1] 0.011013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 9MU B 1 1258 1258 9MU 9MU . E 5 NAG B 1 1259 1259 NAG NAG . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH B 1 2001 2001 HOH HOH . G 6 HOH B 2 2002 2002 HOH HOH . G 6 HOH B 3 2003 2003 HOH HOH . G 6 HOH B 4 2004 2004 HOH HOH . G 6 HOH B 5 2005 2005 HOH HOH . G 6 HOH B 6 2006 2006 HOH HOH . G 6 HOH B 7 2007 2007 HOH HOH . G 6 HOH B 8 2008 2008 HOH HOH . G 6 HOH B 9 2009 2009 HOH HOH . G 6 HOH B 10 2010 2010 HOH HOH . G 6 HOH B 11 2011 2011 HOH HOH . G 6 HOH B 12 2012 2012 HOH HOH . G 6 HOH B 13 2013 2013 HOH HOH . G 6 HOH B 14 2014 2014 HOH HOH . G 6 HOH B 15 2015 2015 HOH HOH . G 6 HOH B 16 2016 2016 HOH HOH . G 6 HOH B 17 2017 2017 HOH HOH . G 6 HOH B 18 2018 2018 HOH HOH . G 6 HOH B 19 2019 2019 HOH HOH . G 6 HOH B 20 2020 2020 HOH HOH . G 6 HOH B 21 2021 2021 HOH HOH . G 6 HOH B 22 2022 2022 HOH HOH . G 6 HOH B 23 2023 2023 HOH HOH . G 6 HOH B 24 2024 2024 HOH HOH . G 6 HOH B 25 2025 2025 HOH HOH . G 6 HOH B 26 2026 2026 HOH HOH . G 6 HOH B 27 2027 2027 HOH HOH . G 6 HOH B 28 2028 2028 HOH HOH . G 6 HOH B 29 2029 2029 HOH HOH . G 6 HOH B 30 2030 2030 HOH HOH . G 6 HOH B 31 2031 2031 HOH HOH . G 6 HOH B 32 2032 2032 HOH HOH . G 6 HOH B 33 2033 2033 HOH HOH . G 6 HOH B 34 2034 2034 HOH HOH . G 6 HOH B 35 2035 2035 HOH HOH . G 6 HOH B 36 2036 2036 HOH HOH . G 6 HOH B 37 2037 2037 HOH HOH . G 6 HOH B 38 2038 2038 HOH HOH . G 6 HOH B 39 2039 2039 HOH HOH . G 6 HOH B 40 2040 2040 HOH HOH . G 6 HOH B 41 2041 2041 HOH HOH . G 6 HOH B 42 2042 2042 HOH HOH . G 6 HOH B 43 2043 2043 HOH HOH . G 6 HOH B 44 2044 2044 HOH HOH . G 6 HOH B 45 2045 2045 HOH HOH . G 6 HOH B 46 2046 2046 HOH HOH . G 6 HOH B 47 2047 2047 HOH HOH . G 6 HOH B 48 2048 2048 HOH HOH . G 6 HOH B 49 2049 2049 HOH HOH . G 6 HOH B 50 2050 2050 HOH HOH . G 6 HOH B 51 2051 2051 HOH HOH . G 6 HOH B 52 2052 2052 HOH HOH . G 6 HOH B 53 2053 2053 HOH HOH . G 6 HOH B 54 2054 2054 HOH HOH . G 6 HOH B 55 2055 2055 HOH HOH . G 6 HOH B 56 2056 2056 HOH HOH . G 6 HOH B 57 2057 2057 HOH HOH . G 6 HOH B 58 2058 2058 HOH HOH . G 6 HOH B 59 2059 2059 HOH HOH . G 6 HOH B 60 2060 2060 HOH HOH . G 6 HOH B 61 2061 2061 HOH HOH . G 6 HOH B 62 2062 2062 HOH HOH . G 6 HOH B 63 2063 2063 HOH HOH . G 6 HOH B 64 2064 2064 HOH HOH . G 6 HOH B 65 2065 2065 HOH HOH . G 6 HOH B 66 2066 2066 HOH HOH . H 6 HOH D 1 2001 2001 HOH HOH . H 6 HOH D 2 2002 2002 HOH HOH . H 6 HOH D 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 9MU . . . D 4 30.402 13.294 24.152 1 38.99 ? N12 9MU 1258 B 1 HETATM 2 C C15 9MU . . . D 4 29.467 13.799 25.203 1 37.72 ? C15 9MU 1258 B 1 HETATM 3 C C17 9MU . . . D 4 29.127 15.279 24.944 1 35.01 ? C17 9MU 1258 B 1 HETATM 4 O O20 9MU . . . D 4 28.366 15.874 25.707 1 37.5 ? O20 9MU 1258 B 1 HETATM 5 C C16 9MU . . . D 4 28.165 12.953 25.346 1 43.45 ? C16 9MU 1258 B 1 HETATM 6 C C18 9MU . . . D 4 28.555 11.634 26.007 1 50.9 ? C18 9MU 1258 B 1 HETATM 7 C C21 9MU . . . D 4 28.705 11.581 27.457 1 54.48 ? C21 9MU 1258 B 1 HETATM 8 C C22 9MU . . . D 4 28.852 10.458 25.216 1 50.61 ? C22 9MU 1258 B 1 HETATM 9 C C24 9MU . . . D 4 29.162 10.385 28.092 1 54.32 ? C24 9MU 1258 B 1 HETATM 10 C C25 9MU . . . D 4 29.303 9.269 25.861 1 49.68 ? C25 9MU 1258 B 1 HETATM 11 C C27 9MU . . . D 4 29.46 9.236 27.282 1 51.08 ? C27 9MU 1258 B 1 HETATM 12 S S11 9MU . . . D 4 32.05 13.2 24.441 1 36.22 ? S11 9MU 1258 B 1 HETATM 13 O O14 9MU . . . D 4 32.302 14.265 25.384 1 39.51 ? O14 9MU 1258 B 1 HETATM 14 O O13 9MU . . . D 4 32.75 13.137 23.237 1 36.23 ? O13 9MU 1258 B 1 HETATM 15 C C3 9MU . . . D 4 32.471 11.66 26.611 1 39.96 ? C3 9MU 1258 B 1 HETATM 16 C C7 9MU . . . D 4 32.34 11.749 25.216 1 39.32 ? C7 9MU 1258 B 1 HETATM 17 C C9 9MU . . . D 4 32.577 10.555 24.444 1 40.3 ? C9 9MU 1258 B 1 HETATM 18 C C5 9MU . . . D 4 32.946 9.351 25.025 1 41.32 ? C5 9MU 1258 B 1 HETATM 19 C C6 9MU . . . D 4 33.477 8.049 27.066 1 43.92 ? C6 9MU 1258 B 1 HETATM 20 C C10 9MU . . . D 4 33.599 8.017 28.44 1 41.72 ? C10 9MU 1258 B 1 HETATM 21 C C8 9MU . . . D 4 33.362 9.171 29.238 1 42.47 ? C8 9MU 1258 B 1 HETATM 22 C C4 9MU . . . D 4 32.998 10.365 28.651 1 43.24 ? C4 9MU 1258 B 1 HETATM 23 C C1 9MU . . . D 4 32.857 10.44 27.23 1 41.26 ? C1 9MU 1258 B 1 HETATM 24 C C2 9MU . . . D 4 33.098 9.272 26.433 1 42.48 ? C2 9MU 1258 B 1 HETATM 25 N N19 9MU . . . D 4 29.73 15.893 23.863 1 32.18 ? N19 9MU 1258 B 1 HETATM 26 C C23 9MU . . . D 4 29.507 17.303 23.5 1 29.35 ? C23 9MU 1258 B 1 HETATM 27 C C26 9MU . . . D 4 30.756 18.208 23.769 1 29.42 ? C26 9MU 1258 B 1 HETATM 28 C C28 9MU . . . D 4 31.185 18.105 25.277 1 28.92 ? C28 9MU 1258 B 1 HETATM 29 C C29 9MU . . . D 4 31.93 17.852 22.811 1 27.7 ? C29 9MU 1258 B 1 HETATM 30 N N30 9MU . . . D 4 32.394 18.975 25.433 1 28.51 ? N30 9MU 1258 B 1 HETATM 31 C C31 9MU . . . D 4 33.155 18.732 23.106 1 27.81 ? C31 9MU 1258 B 1 HETATM 32 C C32 9MU . . . D 4 33.599 18.652 24.608 1 28.72 ? C32 9MU 1258 B 1 HETATM 33 C C33 9MU . . . D 4 32.342 20.096 26.319 1 27.04 ? C33 9MU 1258 B 1 HETATM 34 N N34 9MU . . . D 4 33.456 20.878 26.439 1 27.19 ? N34 9MU 1258 B 1 HETATM 35 N N35 9MU . . . D 4 31.269 20.312 26.952 1 27.72 ? N35 9MU 1258 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #