data_4AZ2 # _model_server_result.job_id 93V7zaeyheRfEo7r3PFOXg _model_server_result.datetime_utc '2024-10-12 16:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4az2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1259}' # _entry.id 4AZ2 # _exptl.entry_id 4AZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AZ2 _cell.length_a 90.8 _cell.length_b 90.8 _cell.length_c 132.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 9 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 173 B CYS 173 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 201 B CYS 201 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 B ND2 ASN 53 B ASN 53 1_555 E C1 NAG . B NAG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 306 n n C1 O1 NAG sing 307 n n C1 O5 NAG sing 308 n n C1 H1 NAG sing 309 n n C2 C3 NAG sing 310 n n C2 N2 NAG sing 311 n n C2 H2 NAG sing 312 n n C3 C4 NAG sing 313 n n C3 O3 NAG sing 314 n n C3 H3 NAG sing 315 n n C4 C5 NAG sing 316 n n C4 O4 NAG sing 317 n n C4 H4 NAG sing 318 n n C5 C6 NAG sing 319 n n C5 O5 NAG sing 320 n n C5 H5 NAG sing 321 n n C6 O6 NAG sing 322 n n C6 H61 NAG sing 323 n n C6 H62 NAG sing 324 n n C7 C8 NAG sing 325 n n C7 N2 NAG sing 326 n n C7 O7 NAG doub 327 n n C8 H81 NAG sing 328 n n C8 H82 NAG sing 329 n n C8 H83 NAG sing 330 n n N2 HN2 NAG sing 331 n n O1 HO1 NAG sing 332 n n O3 HO3 NAG sing 333 n n O4 HO4 NAG sing 334 n n O6 HO6 NAG sing 335 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4AZ2 _atom_sites.fract_transf_matrix[1][1] 0.011013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 9MU B 1 1258 1258 9MU 9MU . E 5 NAG B 1 1259 1259 NAG NAG . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH B 1 2001 2001 HOH HOH . G 6 HOH B 2 2002 2002 HOH HOH . G 6 HOH B 3 2003 2003 HOH HOH . G 6 HOH B 4 2004 2004 HOH HOH . G 6 HOH B 5 2005 2005 HOH HOH . G 6 HOH B 6 2006 2006 HOH HOH . G 6 HOH B 7 2007 2007 HOH HOH . G 6 HOH B 8 2008 2008 HOH HOH . G 6 HOH B 9 2009 2009 HOH HOH . G 6 HOH B 10 2010 2010 HOH HOH . G 6 HOH B 11 2011 2011 HOH HOH . G 6 HOH B 12 2012 2012 HOH HOH . G 6 HOH B 13 2013 2013 HOH HOH . G 6 HOH B 14 2014 2014 HOH HOH . G 6 HOH B 15 2015 2015 HOH HOH . G 6 HOH B 16 2016 2016 HOH HOH . G 6 HOH B 17 2017 2017 HOH HOH . G 6 HOH B 18 2018 2018 HOH HOH . G 6 HOH B 19 2019 2019 HOH HOH . G 6 HOH B 20 2020 2020 HOH HOH . G 6 HOH B 21 2021 2021 HOH HOH . G 6 HOH B 22 2022 2022 HOH HOH . G 6 HOH B 23 2023 2023 HOH HOH . G 6 HOH B 24 2024 2024 HOH HOH . G 6 HOH B 25 2025 2025 HOH HOH . G 6 HOH B 26 2026 2026 HOH HOH . G 6 HOH B 27 2027 2027 HOH HOH . G 6 HOH B 28 2028 2028 HOH HOH . G 6 HOH B 29 2029 2029 HOH HOH . G 6 HOH B 30 2030 2030 HOH HOH . G 6 HOH B 31 2031 2031 HOH HOH . G 6 HOH B 32 2032 2032 HOH HOH . G 6 HOH B 33 2033 2033 HOH HOH . G 6 HOH B 34 2034 2034 HOH HOH . G 6 HOH B 35 2035 2035 HOH HOH . G 6 HOH B 36 2036 2036 HOH HOH . G 6 HOH B 37 2037 2037 HOH HOH . G 6 HOH B 38 2038 2038 HOH HOH . G 6 HOH B 39 2039 2039 HOH HOH . G 6 HOH B 40 2040 2040 HOH HOH . G 6 HOH B 41 2041 2041 HOH HOH . G 6 HOH B 42 2042 2042 HOH HOH . G 6 HOH B 43 2043 2043 HOH HOH . G 6 HOH B 44 2044 2044 HOH HOH . G 6 HOH B 45 2045 2045 HOH HOH . G 6 HOH B 46 2046 2046 HOH HOH . G 6 HOH B 47 2047 2047 HOH HOH . G 6 HOH B 48 2048 2048 HOH HOH . G 6 HOH B 49 2049 2049 HOH HOH . G 6 HOH B 50 2050 2050 HOH HOH . G 6 HOH B 51 2051 2051 HOH HOH . G 6 HOH B 52 2052 2052 HOH HOH . G 6 HOH B 53 2053 2053 HOH HOH . G 6 HOH B 54 2054 2054 HOH HOH . G 6 HOH B 55 2055 2055 HOH HOH . G 6 HOH B 56 2056 2056 HOH HOH . G 6 HOH B 57 2057 2057 HOH HOH . G 6 HOH B 58 2058 2058 HOH HOH . G 6 HOH B 59 2059 2059 HOH HOH . G 6 HOH B 60 2060 2060 HOH HOH . G 6 HOH B 61 2061 2061 HOH HOH . G 6 HOH B 62 2062 2062 HOH HOH . G 6 HOH B 63 2063 2063 HOH HOH . G 6 HOH B 64 2064 2064 HOH HOH . G 6 HOH B 65 2065 2065 HOH HOH . G 6 HOH B 66 2066 2066 HOH HOH . H 6 HOH D 1 2001 2001 HOH HOH . H 6 HOH D 2 2002 2002 HOH HOH . H 6 HOH D 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 40.496 -0.275 12.953 1 80.4 ? C1 NAG 1259 B 1 HETATM 2 C C2 NAG . . . E 5 41.001 -1.438 13.833 1 87.44 ? C2 NAG 1259 B 1 HETATM 3 C C3 NAG . . . E 5 42.418 -1.911 13.48 1 93.75 ? C3 NAG 1259 B 1 HETATM 4 C C4 NAG . . . E 5 42.587 -2.071 11.968 1 92.99 ? C4 NAG 1259 B 1 HETATM 5 C C5 NAG . . . E 5 42.191 -0.733 11.336 1 87.09 ? C5 NAG 1259 B 1 HETATM 6 C C6 NAG . . . E 5 42.543 -0.652 9.85 1 82.47 ? C6 NAG 1259 B 1 HETATM 7 C C7 NAG . . . E 5 39.901 -1.381 16.011 1 77.61 ? C7 NAG 1259 B 1 HETATM 8 C C8 NAG . . . E 5 40.037 -1.109 17.487 1 71.08 ? C8 NAG 1259 B 1 HETATM 9 N N2 NAG . . . E 5 40.99 -1.178 15.267 1 79.07 ? N2 NAG 1259 B 1 HETATM 10 O O3 NAG . . . E 5 42.696 -3.122 14.155 1 93.1 ? O3 NAG 1259 B 1 HETATM 11 O O4 NAG . . . E 5 43.919 -2.428 11.645 1 98.22 ? O4 NAG 1259 B 1 HETATM 12 O O5 NAG . . . E 5 40.807 -0.507 11.583 1 82.89 ? O5 NAG 1259 B 1 HETATM 13 O O6 NAG . . . E 5 41.394 -0.836 9.057 1 78.5 ? O6 NAG 1259 B 1 HETATM 14 O O7 NAG . . . E 5 38.828 -1.763 15.529 1 72.97 ? O7 NAG 1259 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #