data_4AZD
#
_model_server_result.job_id            7F4iDLJ7-2xxSFK3zyvvxQ 
_model_server_result.datetime_utc      '2024-11-22 04:59:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4azd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1120}' 
#
_entry.id    4AZD 
#
_exptl.entry_id    4AZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AZD 
_cell.length_a            69.92 
_cell.length_b            69.92 
_cell.length_c            217.72 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -34.96 -60.552496 -36.286667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     4AZD 
_atom_sites.fract_transf_matrix[1][1]    0.014302 
_atom_sites.fract_transf_matrix[1][2]    0.008257 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLI A 1 1118 1118 MLI MLI . 
D 2 MLI A 1 1119 1119 MLI MLI . 
E 2 MLI A 1 1120 1120 MLI MLI . 
F 2 MLI B 1 1118 1118 MLI MLI . 
G 3 HOH A 1 2001 2001 HOH HOH . 
G 3 HOH A 2 2002 2002 HOH HOH . 
G 3 HOH A 3 2003 2003 HOH HOH . 
G 3 HOH A 4 2004 2004 HOH HOH . 
G 3 HOH A 5 2005 2005 HOH HOH . 
G 3 HOH A 6 2006 2006 HOH HOH . 
G 3 HOH A 7 2007 2007 HOH HOH . 
G 3 HOH A 8 2008 2008 HOH HOH . 
G 3 HOH A 9 2009 2009 HOH HOH . 
G 3 HOH A 10 2010 2010 HOH HOH . 
G 3 HOH A 11 2011 2011 HOH HOH . 
G 3 HOH A 12 2012 2012 HOH HOH . 
G 3 HOH A 13 2013 2013 HOH HOH . 
G 3 HOH A 14 2014 2014 HOH HOH . 
G 3 HOH A 15 2015 2015 HOH HOH . 
G 3 HOH A 16 2016 2016 HOH HOH . 
G 3 HOH A 17 2017 2017 HOH HOH . 
G 3 HOH A 18 2018 2018 HOH HOH . 
G 3 HOH A 19 2019 2019 HOH HOH . 
G 3 HOH A 20 2020 2020 HOH HOH . 
G 3 HOH A 21 2021 2021 HOH HOH . 
G 3 HOH A 22 2022 2022 HOH HOH . 
G 3 HOH A 23 2023 2023 HOH HOH . 
G 3 HOH A 24 2024 2024 HOH HOH . 
G 3 HOH A 25 2025 2025 HOH HOH . 
G 3 HOH A 26 2026 2026 HOH HOH . 
G 3 HOH A 27 2027 2027 HOH HOH . 
G 3 HOH A 28 2028 2028 HOH HOH . 
G 3 HOH A 29 2029 2029 HOH HOH . 
G 3 HOH A 30 2030 2030 HOH HOH . 
G 3 HOH A 31 2031 2031 HOH HOH . 
G 3 HOH A 32 2032 2032 HOH HOH . 
G 3 HOH A 33 2033 2033 HOH HOH . 
G 3 HOH A 34 2034 2034 HOH HOH . 
G 3 HOH A 35 2035 2035 HOH HOH . 
G 3 HOH A 36 2036 2036 HOH HOH . 
G 3 HOH A 37 2037 2037 HOH HOH . 
G 3 HOH A 38 2038 2038 HOH HOH . 
G 3 HOH A 39 2039 2039 HOH HOH . 
G 3 HOH A 40 2040 2040 HOH HOH . 
G 3 HOH A 41 2041 2041 HOH HOH . 
G 3 HOH A 42 2042 2042 HOH HOH . 
G 3 HOH A 43 2043 2043 HOH HOH . 
G 3 HOH A 44 2044 2044 HOH HOH . 
G 3 HOH A 45 2045 2045 HOH HOH . 
G 3 HOH A 46 2046 2046 HOH HOH . 
G 3 HOH A 47 2047 2047 HOH HOH . 
G 3 HOH A 48 2048 2048 HOH HOH . 
G 3 HOH A 49 2049 2049 HOH HOH . 
G 3 HOH A 50 2050 2050 HOH HOH . 
G 3 HOH A 51 2051 2051 HOH HOH . 
G 3 HOH A 52 2052 2052 HOH HOH . 
G 3 HOH A 53 2053 2053 HOH HOH . 
G 3 HOH A 54 2054 2054 HOH HOH . 
G 3 HOH A 55 2055 2055 HOH HOH . 
G 3 HOH A 56 2056 2056 HOH HOH . 
G 3 HOH A 57 2057 2057 HOH HOH . 
G 3 HOH A 58 2058 2058 HOH HOH . 
G 3 HOH A 59 2059 2059 HOH HOH . 
G 3 HOH A 60 2060 2060 HOH HOH . 
G 3 HOH A 61 2061 2061 HOH HOH . 
G 3 HOH A 62 2062 2062 HOH HOH . 
G 3 HOH A 63 2063 2063 HOH HOH . 
G 3 HOH A 64 2064 2064 HOH HOH . 
G 3 HOH A 65 2065 2065 HOH HOH . 
G 3 HOH A 66 2066 2066 HOH HOH . 
G 3 HOH A 67 2067 2067 HOH HOH . 
G 3 HOH A 68 2068 2068 HOH HOH . 
G 3 HOH A 69 2069 2069 HOH HOH . 
G 3 HOH A 70 2070 2070 HOH HOH . 
G 3 HOH A 71 2071 2071 HOH HOH . 
G 3 HOH A 72 2072 2072 HOH HOH . 
G 3 HOH A 73 2073 2073 HOH HOH . 
G 3 HOH A 74 2074 2074 HOH HOH . 
G 3 HOH A 75 2075 2075 HOH HOH . 
H 3 HOH B 1 2001 2001 HOH HOH . 
H 3 HOH B 2 2002 2002 HOH HOH . 
H 3 HOH B 3 2003 2003 HOH HOH . 
H 3 HOH B 4 2004 2004 HOH HOH . 
H 3 HOH B 5 2005 2005 HOH HOH . 
H 3 HOH B 6 2006 2006 HOH HOH . 
H 3 HOH B 7 2007 2007 HOH HOH . 
H 3 HOH B 8 2008 2008 HOH HOH . 
H 3 HOH B 9 2009 2009 HOH HOH . 
H 3 HOH B 10 2010 2010 HOH HOH . 
H 3 HOH B 11 2011 2011 HOH HOH . 
H 3 HOH B 12 2012 2012 HOH HOH . 
H 3 HOH B 13 2013 2013 HOH HOH . 
H 3 HOH B 14 2014 2014 HOH HOH . 
H 3 HOH B 15 2015 2015 HOH HOH . 
H 3 HOH B 16 2016 2016 HOH HOH . 
H 3 HOH B 17 2017 2017 HOH HOH . 
H 3 HOH B 18 2018 2018 HOH HOH . 
H 3 HOH B 19 2019 2019 HOH HOH . 
H 3 HOH B 20 2020 2020 HOH HOH . 
H 3 HOH B 21 2021 2021 HOH HOH . 
H 3 HOH B 22 2022 2022 HOH HOH . 
H 3 HOH B 23 2023 2023 HOH HOH . 
H 3 HOH B 24 2024 2024 HOH HOH . 
H 3 HOH B 25 2025 2025 HOH HOH . 
H 3 HOH B 26 2026 2026 HOH HOH . 
H 3 HOH B 27 2027 2027 HOH HOH . 
H 3 HOH B 28 2028 2028 HOH HOH . 
H 3 HOH B 29 2029 2029 HOH HOH . 
H 3 HOH B 30 2030 2030 HOH HOH . 
H 3 HOH B 31 2031 2031 HOH HOH . 
H 3 HOH B 32 2032 2032 HOH HOH . 
H 3 HOH B 33 2033 2033 HOH HOH . 
H 3 HOH B 34 2034 2034 HOH HOH . 
H 3 HOH B 35 2035 2035 HOH HOH . 
H 3 HOH B 36 2036 2036 HOH HOH . 
H 3 HOH B 37 2037 2037 HOH HOH . 
H 3 HOH B 38 2038 2038 HOH HOH . 
H 3 HOH B 39 2039 2039 HOH HOH . 
H 3 HOH B 40 2040 2040 HOH HOH . 
H 3 HOH B 41 2041 2041 HOH HOH . 
H 3 HOH B 42 2042 2042 HOH HOH . 
H 3 HOH B 43 2043 2043 HOH HOH . 
H 3 HOH B 44 2044 2044 HOH HOH . 
H 3 HOH B 45 2045 2045 HOH HOH . 
H 3 HOH B 46 2046 2046 HOH HOH . 
H 3 HOH B 47 2047 2047 HOH HOH . 
H 3 HOH B 48 2048 2048 HOH HOH . 
H 3 HOH B 49 2049 2049 HOH HOH . 
H 3 HOH B 50 2050 2050 HOH HOH . 
H 3 HOH B 51 2051 2051 HOH HOH . 
H 3 HOH B 52 2052 2052 HOH HOH . 
H 3 HOH B 53 2053 2053 HOH HOH . 
H 3 HOH B 54 2054 2054 HOH HOH . 
H 3 HOH B 55 2055 2055 HOH HOH . 
H 3 HOH B 56 2056 2056 HOH HOH . 
H 3 HOH B 57 2057 2057 HOH HOH . 
H 3 HOH B 58 2058 2058 HOH HOH . 
H 3 HOH B 59 2059 2059 HOH HOH . 
H 3 HOH B 60 2060 2060 HOH HOH . 
H 3 HOH B 61 2061 2061 HOH HOH . 
H 3 HOH B 62 2062 2062 HOH HOH . 
H 3 HOH B 63 2063 2063 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . E 2 -15.609 -35.802 2.847 1 23.36 ? C1 MLI 1120 A 1 
HETATM 2 C C2 MLI . . . E 2 -15.845 -34.579 1.912 1 22.11 ? C2 MLI 1120 A 1 
HETATM 3 C C3 MLI . . . E 2 -14.506 -35.427 3.86 1 30.17 ? C3 MLI 1120 A 1 
HETATM 4 O O6 MLI . . . E 2 -16.596 -33.649 2.239 1 20.46 ? O6 MLI 1120 A 1 
HETATM 5 O O7 MLI . . . E 2 -15.209 -34.504 0.83 1 18.36 ? O7 MLI 1120 A 1 
HETATM 6 O O8 MLI . . . E 2 -13.266 -35.661 3.701 1 26.08 ? O8 MLI 1120 A 1 
HETATM 7 O O9 MLI . . . E 2 -14.907 -34.874 4.902 1 35.48 ? O9 MLI 1120 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#