data_4AZE # _model_server_result.job_id JhP3XOE1UtMPjGOLmG5wsQ _model_server_result.datetime_utc '2024-10-16 14:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":700}' # _entry.id 4AZE # _exptl.entry_id 4AZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.303 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AZE _cell.length_a 111.649 _cell.length_b 111.649 _cell.length_c 301.725 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 197 A ARG 300 1_555 A N SEP 198 A SEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C SEP 198 A SEP 301 1_555 A N ALA 199 A ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLN 217 A GLN 320 1_555 A N PTR 218 A PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C PTR 218 A PTR 321 1_555 A N ILE 219 A ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 B C ARG 197 B ARG 300 1_555 B N SEP 198 B SEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C SEP 198 B SEP 301 1_555 B N ALA 199 B ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C GLN 217 B GLN 320 1_555 B N PTR 218 B PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 B C PTR 218 B PTR 321 1_555 B N ILE 219 B ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 C C ARG 197 C ARG 300 1_555 C N SEP 198 C SEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 C C SEP 198 C SEP 301 1_555 C N ALA 199 C ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 C C GLN 217 C GLN 320 1_555 C N PTR 218 C PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 C C PTR 218 C PTR 321 1_555 C N ILE 219 C ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 D C UNK 1 E UNK 899 1_555 D N SEP 2 E SEP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 D C SEP 2 E SEP 900 1_555 D N UNK 3 E UNK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 E C UNK 1 F UNK 899 1_555 E N SEP 2 F SEP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 E C SEP 2 F SEP 900 1_555 E N UNK 3 F UNK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 F C UNK 1 G UNK 899 1_555 F N SEP 2 G SEP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 F C SEP 2 G SEP 900 1_555 F N UNK 3 G UNK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C17 H13 N3 O3' _chem_comp.formula_weight 307.303 _chem_comp.id 3RA _chem_comp.mon_nstd_flag . _chem_comp.name 5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAA 3RA doub 1 n y CAA CAB 3RA sing 2 n y CAA HAA 3RA sing 3 n n CAC CAB 3RA doub 4 n y CAB HAB 3RA sing 5 n n CAD CAC 3RA sing 6 n y CAC HAC 3RA sing 7 n n CAE CAD 3RA doub 8 n y CAD HAD 3RA sing 9 n n CAE CAF 3RA sing 10 n y CAE HAE 3RA sing 11 n n CAF NAG 3RA sing 12 n n CAH NAG 3RA sing 13 n n NAG HNAG 3RA sing 14 n n NAI CAH 3RA sing 15 n n CAH NAL 3RA doub 16 n n CAJ NAI 3RA doub 17 n n CAN CAJ 3RA sing 18 n n CAJ CAK 3RA sing 19 n n OAM CAK 3RA doub 20 n n CAK NAL 3RA sing 21 n n CAO CAN 3RA sing 22 n n CAN HAN 3RA sing 23 n n CAN HANA 3RA sing 24 n n CAT CAO 3RA doub 25 n y CAO CAP 3RA sing 26 n y CAQ CAP 3RA doub 27 n y CAP HAP 3RA sing 28 n n CAR CAQ 3RA sing 29 n y OAU CAQ 3RA sing 30 n n OAW CAR 3RA sing 31 n n CAS CAR 3RA doub 32 n y CAS CAT 3RA sing 33 n y CAS HAS 3RA sing 34 n n CAT HAT 3RA sing 35 n n CAV OAU 3RA sing 36 n n OAW CAV 3RA sing 37 n n CAV HAV 3RA sing 38 n n CAV HAVA 3RA sing 39 n n # _atom_sites.entry_id 4AZE _atom_sites.fract_transf_matrix[1][1] 0.008957 _atom_sites.fract_transf_matrix[1][2] 0.005171 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 3RA A 1 700 700 3RA 3RA . H 3 3RA B 1 700 700 3RA 3RA . I 3 3RA C 1 700 700 3RA 3RA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3RA . . . H 3 -88.068 -11.821 30.13 1 78.83 ? CAA 3RA 700 B 1 HETATM 2 C CAB 3RA . . . H 3 -89.327 -12.261 29.719 1 78.01 ? CAB 3RA 700 B 1 HETATM 3 C CAC 3RA . . . H 3 -89.561 -13.623 29.524 1 80.1 ? CAC 3RA 700 B 1 HETATM 4 C CAD 3RA . . . H 3 -88.537 -14.543 29.742 1 78.79 ? CAD 3RA 700 B 1 HETATM 5 C CAE 3RA . . . H 3 -87.281 -14.086 30.154 1 80.85 ? CAE 3RA 700 B 1 HETATM 6 C CAF 3RA . . . H 3 -87.027 -12.727 30.366 1 77.15 ? CAF 3RA 700 B 1 HETATM 7 N NAG 3RA . . . H 3 -85.788 -12.343 30.744 1 71.17 ? NAG 3RA 700 B 1 HETATM 8 C CAH 3RA . . . H 3 -85.508 -11.218 31.415 1 70.63 ? CAH 3RA 700 B 1 HETATM 9 N NAI 3RA . . . H 3 -86.363 -10.581 32.202 1 73 ? NAI 3RA 700 B 1 HETATM 10 C CAJ 3RA . . . H 3 -85.751 -9.492 32.702 1 71.87 ? CAJ 3RA 700 B 1 HETATM 11 C CAK 3RA . . . H 3 -84.453 -9.491 32.201 1 70.32 ? CAK 3RA 700 B 1 HETATM 12 N NAL 3RA . . . H 3 -84.333 -10.565 31.4 1 71.27 ? NAL 3RA 700 B 1 HETATM 13 O OAM 3RA . . . H 3 -83.592 -8.633 32.463 1 63.4 ? OAM 3RA 700 B 1 HETATM 14 C CAN 3RA . . . H 3 -86.172 -8.486 33.58 1 68.98 ? CAN 3RA 700 B 1 HETATM 15 C CAO 3RA . . . H 3 -87.486 -8.414 34.074 1 67.76 ? CAO 3RA 700 B 1 HETATM 16 C CAP 3RA . . . H 3 -88.414 -9.424 33.851 1 64.21 ? CAP 3RA 700 B 1 HETATM 17 C CAQ 3RA . . . H 3 -89.693 -9.304 34.338 1 64.79 ? CAQ 3RA 700 B 1 HETATM 18 C CAR 3RA . . . H 3 -90.059 -8.188 35.074 1 62.49 ? CAR 3RA 700 B 1 HETATM 19 C CAS 3RA . . . H 3 -89.158 -7.179 35.322 1 61.84 ? CAS 3RA 700 B 1 HETATM 20 C CAT 3RA . . . H 3 -87.87 -7.3 34.826 1 67.55 ? CAT 3RA 700 B 1 HETATM 21 O OAU 3RA . . . H 3 -90.759 -10.137 34.241 1 72.15 ? OAU 3RA 700 B 1 HETATM 22 C CAV 3RA . . . H 3 -91.857 -9.245 34.429 1 73.17 ? CAV 3RA 700 B 1 HETATM 23 O OAW 3RA . . . H 3 -91.349 -8.332 35.422 1 70.92 ? OAW 3RA 700 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #