data_4AZE
#
_model_server_result.job_id            hssl44PaTmZZzItFR_uuWw 
_model_server_result.datetime_utc      '2024-11-30 04:45:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4aze 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":700}' 
#
_entry.id    4AZE 
#
_exptl.entry_id    4AZE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.303 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AZE 
_cell.length_a            111.649 
_cell.length_b            111.649 
_cell.length_c            301.725 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AZE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 2 1 
C,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 197 A ARG 300 1_555 A N SEP 198 A SEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C SEP 198 A SEP 301 1_555 A N ALA 199 A ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C GLN 217 A GLN 320 1_555 A N PTR 218 A PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C PTR 218 A PTR 321 1_555 A N ILE 219 A ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 B C ARG 197 B ARG 300 1_555 B N SEP 198 B SEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 B C SEP 198 B SEP 301 1_555 B N ALA 199 B ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 B C GLN 217 B GLN 320 1_555 B N PTR 218 B PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 B C PTR 218 B PTR 321 1_555 B N ILE 219 B ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale9 C C ARG 197 C ARG 300 1_555 C N SEP 198 C SEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 C C SEP 198 C SEP 301 1_555 C N ALA 199 C ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale11 C C GLN 217 C GLN 320 1_555 C N PTR 218 C PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale12 C C PTR 218 C PTR 321 1_555 C N ILE 219 C ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale13 D C UNK 1 E UNK 899 1_555 D N SEP 2 E SEP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale14 D C SEP 2 E SEP 900 1_555 D N UNK 3 E UNK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale15 E C UNK 1 F UNK 899 1_555 E N SEP 2 F SEP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale16 E C SEP 2 F SEP 900 1_555 E N UNK 3 F UNK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale17 F C UNK 1 G UNK 899 1_555 F N SEP 2 G SEP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 F C SEP 2 G SEP 900 1_555 F N UNK 3 G UNK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C17 H13 N3 O3' 
_chem_comp.formula_weight    307.303 
_chem_comp.id                3RA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAA 3RA doub 1 n y 
CAA CAB 3RA sing 2 n y 
CAA HAA 3RA sing 3 n n 
CAC CAB 3RA doub 4 n y 
CAB HAB 3RA sing 5 n n 
CAD CAC 3RA sing 6 n y 
CAC HAC 3RA sing 7 n n 
CAE CAD 3RA doub 8 n y 
CAD HAD 3RA sing 9 n n 
CAE CAF 3RA sing 10 n y 
CAE HAE 3RA sing 11 n n 
CAF NAG 3RA sing 12 n n 
CAH NAG 3RA sing 13 n n 
NAG HNAG 3RA sing 14 n n 
NAI CAH 3RA sing 15 n n 
CAH NAL 3RA doub 16 n n 
CAJ NAI 3RA doub 17 n n 
CAN CAJ 3RA sing 18 n n 
CAJ CAK 3RA sing 19 n n 
OAM CAK 3RA doub 20 n n 
CAK NAL 3RA sing 21 n n 
CAO CAN 3RA sing 22 n n 
CAN HAN 3RA sing 23 n n 
CAN HANA 3RA sing 24 n n 
CAT CAO 3RA doub 25 n y 
CAO CAP 3RA sing 26 n y 
CAQ CAP 3RA doub 27 n y 
CAP HAP 3RA sing 28 n n 
CAR CAQ 3RA sing 29 n y 
OAU CAQ 3RA sing 30 n n 
OAW CAR 3RA sing 31 n n 
CAS CAR 3RA doub 32 n y 
CAS CAT 3RA sing 33 n y 
CAS HAS 3RA sing 34 n n 
CAT HAT 3RA sing 35 n n 
CAV OAU 3RA sing 36 n n 
OAW CAV 3RA sing 37 n n 
CAV HAV 3RA sing 38 n n 
CAV HAVA 3RA sing 39 n n 
#
_atom_sites.entry_id                     4AZE 
_atom_sites.fract_transf_matrix[1][1]    0.008957 
_atom_sites.fract_transf_matrix[1][2]    0.005171 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010342 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003314 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 3RA A 1 700 700 3RA 3RA . 
H 3 3RA B 1 700 700 3RA 3RA . 
I 3 3RA C 1 700 700 3RA 3RA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 3RA . . . I 3 -85.554 -27.355 -17.184 1 83.28 ? CAA 3RA 700 C 1 
HETATM 2 C CAB 3RA . . . I 3 -85.815 -25.983 -17.244 1 84.76 ? CAB 3RA 700 C 1 
HETATM 3 C CAC 3RA . . . I 3 -85.662 -25.178 -16.117 1 83.71 ? CAC 3RA 700 C 1 
HETATM 4 C CAD 3RA . . . I 3 -85.251 -25.783 -14.929 1 89.42 ? CAD 3RA 700 C 1 
HETATM 5 C CAE 3RA . . . I 3 -84.994 -27.163 -14.863 1 86.86 ? CAE 3RA 700 C 1 
HETATM 6 C CAF 3RA . . . I 3 -85.145 -27.968 -15.992 1 83.66 ? CAF 3RA 700 C 1 
HETATM 7 N NAG 3RA . . . I 3 -84.886 -29.287 -15.907 1 81.02 ? NAG 3RA 700 C 1 
HETATM 8 C CAH 3RA . . . I 3 -85.362 -30.19 -16.794 1 87 ? CAH 3RA 700 C 1 
HETATM 9 N NAI 3RA . . . I 3 -85.97 -29.908 -17.963 1 83.23 ? NAI 3RA 700 C 1 
HETATM 10 C CAJ 3RA . . . I 3 -86.318 -31.055 -18.558 1 81.82 ? CAJ 3RA 700 C 1 
HETATM 11 C CAK 3RA . . . I 3 -85.881 -32.071 -17.691 1 84.91 ? CAK 3RA 700 C 1 
HETATM 12 N NAL 3RA . . . I 3 -85.297 -31.52 -16.619 1 85.22 ? NAL 3RA 700 C 1 
HETATM 13 O OAM 3RA . . . I 3 -86.003 -33.286 -17.867 1 84.84 ? OAM 3RA 700 C 1 
HETATM 14 C CAN 3RA . . . I 3 -86.982 -31.304 -19.773 1 76.69 ? CAN 3RA 700 C 1 
HETATM 15 C CAO 3RA . . . I 3 -87.51 -30.274 -20.585 1 75.97 ? CAO 3RA 700 C 1 
HETATM 16 C CAP 3RA . . . I 3 -87.453 -28.909 -20.254 1 76.27 ? CAP 3RA 700 C 1 
HETATM 17 C CAQ 3RA . . . I 3 -87.978 -27.915 -21.09 1 79.47 ? CAQ 3RA 700 C 1 
HETATM 18 C CAR 3RA . . . I 3 -88.593 -28.285 -22.283 1 77.99 ? CAR 3RA 700 C 1 
HETATM 19 C CAS 3RA . . . I 3 -88.659 -29.632 -22.624 1 74.29 ? CAS 3RA 700 C 1 
HETATM 20 C CAT 3RA . . . I 3 -88.125 -30.615 -21.786 1 74.37 ? CAT 3RA 700 C 1 
HETATM 21 O OAU 3RA . . . I 3 -88.034 -26.544 -20.953 1 84.46 ? OAU 3RA 700 C 1 
HETATM 22 C CAV 3RA . . . I 3 -88.539 -26.017 -22.192 1 85.36 ? CAV 3RA 700 C 1 
HETATM 23 O OAW 3RA . . . I 3 -89.036 -27.17 -22.931 1 87.2 ? OAW 3RA 700 C 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           23 
#