data_4AZF # _model_server_result.job_id r3tDXS2dDqA1DoqkTgdqXQ _model_server_result.datetime_utc '2024-11-30 02:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4azf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 4AZF # _exptl.entry_id 4AZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.303 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AZF _cell.length_a 83.461 _cell.length_b 83.461 _cell.length_c 148.534 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 8 A SER 58 1_555 A N SEP 9 A SEP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C SEP 9 A SEP 59 1_555 A N GLY 10 A GLY 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C THR 258 A THR 308 1_555 A N PTR 259 A PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C PTR 259 A PTR 309 1_555 A N ILE 260 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C SER 334 A SER 384 1_555 A N SEP 335 A SEP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C SEP 335 A SEP 385 1_555 A N LYS 336 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C17 H13 N3 O3' _chem_comp.formula_weight 307.303 _chem_comp.id 3RA _chem_comp.mon_nstd_flag . _chem_comp.name 5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAA 3RA doub 1 n y CAA CAB 3RA sing 2 n y CAA HAA 3RA sing 3 n n CAC CAB 3RA doub 4 n y CAB HAB 3RA sing 5 n n CAD CAC 3RA sing 6 n y CAC HAC 3RA sing 7 n n CAE CAD 3RA doub 8 n y CAD HAD 3RA sing 9 n n CAE CAF 3RA sing 10 n y CAE HAE 3RA sing 11 n n CAF NAG 3RA sing 12 n n CAH NAG 3RA sing 13 n n NAG HNAG 3RA sing 14 n n NAI CAH 3RA sing 15 n n CAH NAL 3RA doub 16 n n CAJ NAI 3RA doub 17 n n CAN CAJ 3RA sing 18 n n CAJ CAK 3RA sing 19 n n OAM CAK 3RA doub 20 n n CAK NAL 3RA sing 21 n n CAO CAN 3RA sing 22 n n CAN HAN 3RA sing 23 n n CAN HANA 3RA sing 24 n n CAT CAO 3RA doub 25 n y CAO CAP 3RA sing 26 n y CAQ CAP 3RA doub 27 n y CAP HAP 3RA sing 28 n n CAR CAQ 3RA sing 29 n y OAU CAQ 3RA sing 30 n n OAW CAR 3RA sing 31 n n CAS CAR 3RA doub 32 n y CAS CAT 3RA sing 33 n y CAS HAS 3RA sing 34 n n CAT HAT 3RA sing 35 n n CAV OAU 3RA sing 36 n n OAW CAV 3RA sing 37 n n CAV HAV 3RA sing 38 n n CAV HAVA 3RA sing 39 n n # _atom_sites.entry_id 4AZF _atom_sites.fract_transf_matrix[1][1] 0.011982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3RA A 1 600 600 3RA 3RA . C 3 EDO A 1 1464 1464 EDO EDO . D 4 PO4 A 1 1465 1465 PO4 PO4 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3RA . . . B 2 32.105 22.408 16.952 1 64.84 ? CAA 3RA 600 A 1 HETATM 2 C CAB 3RA . . . B 2 31.943 21.122 16.431 1 73 ? CAB 3RA 600 A 1 HETATM 3 C CAC 3RA . . . B 2 31.86 20.924 15.044 1 81.09 ? CAC 3RA 600 A 1 HETATM 4 C CAD 3RA . . . B 2 31.933 22.007 14.165 1 67.69 ? CAD 3RA 600 A 1 HETATM 5 C CAE 3RA . . . B 2 32.097 23.283 14.695 1 62.47 ? CAE 3RA 600 A 1 HETATM 6 C CAF 3RA . . . B 2 32.181 23.496 16.083 1 61.53 ? CAF 3RA 600 A 1 HETATM 7 N NAG 3RA . . . B 2 32.341 24.761 16.479 1 62.22 ? NAG 3RA 600 A 1 HETATM 8 C CAH 3RA . . . B 2 32.413 25.257 17.726 1 55.54 ? CAH 3RA 600 A 1 HETATM 9 N NAI 3RA . . . B 2 32.536 24.634 18.908 1 47.54 ? NAI 3RA 600 A 1 HETATM 10 C CAJ 3RA . . . B 2 32.568 25.589 19.855 1 50.83 ? CAJ 3RA 600 A 1 HETATM 11 C CAK 3RA . . . B 2 32.475 26.815 19.176 1 54.4 ? CAK 3RA 600 A 1 HETATM 12 N NAL 3RA . . . B 2 32.393 26.583 17.885 1 55.15 ? NAL 3RA 600 A 1 HETATM 13 O OAM 3RA . . . B 2 32.473 27.96 19.643 1 51.23 ? OAM 3RA 600 A 1 HETATM 14 C CAN 3RA . . . B 2 32.704 25.568 21.253 1 45.1 ? CAN 3RA 600 A 1 HETATM 15 C CAO 3RA . . . B 2 32.681 24.429 22.08 1 49.28 ? CAO 3RA 600 A 1 HETATM 16 C CAP 3RA . . . B 2 32.524 23.118 21.593 1 49.46 ? CAP 3RA 600 A 1 HETATM 17 C CAQ 3RA . . . B 2 32.496 22.027 22.465 1 45.41 ? CAQ 3RA 600 A 1 HETATM 18 C CAR 3RA . . . B 2 32.616 22.23 23.84 1 47 ? CAR 3RA 600 A 1 HETATM 19 C CAS 3RA . . . B 2 32.789 23.525 24.336 1 42.62 ? CAS 3RA 600 A 1 HETATM 20 C CAT 3RA . . . B 2 32.806 24.613 23.463 1 39.15 ? CAT 3RA 600 A 1 HETATM 21 O OAU 3RA . . . B 2 32.356 20.694 22.217 1 56.75 ? OAU 3RA 600 A 1 HETATM 22 C CAV 3RA . . . B 2 32.652 20.016 23.452 1 53.55 ? CAV 3RA 600 A 1 HETATM 23 O OAW 3RA . . . B 2 32.547 21.029 24.481 1 52.88 ? OAW 3RA 600 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #