data_4AZL
#
_model_server_result.job_id            V0iyxWyr7HcmzUQTzM2AYA 
_model_server_result.datetime_utc      '2024-11-21 13:41:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4azl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1497}' 
#
_entry.id    4AZL 
#
_exptl.entry_id    4AZL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.36 
_cell.angle_gamma         90 
_cell.entry_id            4AZL 
_cell.length_a            47.09 
_cell.length_b            245.76 
_cell.length_c            47.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AZL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,R 1 1 
B,J,K,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 23 A ASP 55 1_555 F CA CA . A CA 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? 
metalc ? metalc2 A OD2 ASP 23 A ASP 55 1_555 F CA CA . A CA 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? 
metalc ? metalc3 A OD2 ASP 25 A ASP 57 1_555 F CA CA . A CA 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? 
metalc ? metalc4 A O ALA 29 A ALA 61 1_555 F CA CA . A CA 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? 
metalc ? metalc5 B OD2 ASP 23 B ASP 55 1_555 O CA CA . B CA 1496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc6 B O ALA 29 B ALA 61 1_555 O CA CA . B CA 1496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 56 n n 
C19 C18 78N sing 57 n n 
C18 O20 78N sing 58 n n 
C18 C17 78N sing 59 n n 
C17 O16 78N sing 60 n n 
O16 C8 78N sing 61 n n 
C8 O15 78N doub 62 n n 
C8 C7 78N sing 63 n n 
C7 C6 78N sing 64 n n 
C6 C5 78N sing 65 n n 
C5 C4 78N sing 66 n n 
C4 C3 78N sing 67 n n 
C3 C2 78N sing 68 n n 
C2 C1 78N doub 69 z n 
C1 C9 78N sing 70 n n 
C9 C10 78N sing 71 n n 
C10 C11 78N sing 72 n n 
C11 C12 78N sing 73 n n 
C12 C13 78N sing 74 n n 
C13 C14 78N sing 75 n n 
C15 C14 78N sing 76 n n 
O22 H22 78N sing 77 n n 
C19 H191 78N sing 78 n n 
C19 H192 78N sing 79 n n 
C18 H18 78N sing 80 n n 
O20 H20 78N sing 81 n n 
C17 H171 78N sing 82 n n 
C17 H172 78N sing 83 n n 
C7 H71 78N sing 84 n n 
C7 H72 78N sing 85 n n 
C6 H61C 78N sing 86 n n 
C6 H62C 78N sing 87 n n 
C5 H51C 78N sing 88 n n 
C5 H52C 78N sing 89 n n 
C4 H41C 78N sing 90 n n 
C4 H42C 78N sing 91 n n 
C3 H31C 78N sing 92 n n 
C3 H32C 78N sing 93 n n 
C2 H2 78N sing 94 n n 
C1 H1 78N sing 95 n n 
C9 H91C 78N sing 96 n n 
C9 H92C 78N sing 97 n n 
C10 H101 78N sing 98 n n 
C10 H102 78N sing 99 n n 
C11 H111 78N sing 100 n n 
C11 H112 78N sing 101 n n 
C12 H121 78N sing 102 n n 
C12 H122 78N sing 103 n n 
C13 H131 78N sing 104 n n 
C13 H132 78N sing 105 n n 
C14 H141 78N sing 106 n n 
C14 H142 78N sing 107 n n 
C15 H151 78N sing 108 n n 
C15 H152 78N sing 109 n n 
C15 H153 78N sing 110 n n 
#
_atom_sites.entry_id                     4AZL 
_atom_sites.fract_transf_matrix[1][1]    0.021236 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005437 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021902 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 78M A 1 1491 1491 78M 78M . 
D 2 78M A 1 1492 1492 78M 78M . 
E 2 78M A 1 1493 1493 78M 78M . 
F 3 CA A 1 1494 1494 CA CA . 
G 4 78N A 1 1495 1495 78N 78N . 
H 4 78N A 1 1496 1496 78N 78N . 
I 4 78N A 1 1497 1497 78N 78N . 
J 2 78M B 1 1491 1491 78M 78M . 
K 2 78M B 1 1492 1492 78M 78M . 
L 2 78M B 1 1493 1493 78M 78M . 
M 2 78M B 1 1494 1494 78M 78M . 
N 2 78M B 1 1495 1495 78M 78M . 
O 3 CA B 1 1496 1496 CA CA . 
P 2 78M B 1 1497 1497 78M 78M . 
Q 2 78M B 1 1498 1498 78M 78M . 
R 5 HOH A 1 2001 2001 HOH HOH . 
R 5 HOH A 2 2002 2002 HOH HOH . 
R 5 HOH A 3 2003 2003 HOH HOH . 
R 5 HOH A 4 2004 2004 HOH HOH . 
R 5 HOH A 5 2005 2005 HOH HOH . 
R 5 HOH A 6 2006 2006 HOH HOH . 
R 5 HOH A 7 2007 2007 HOH HOH . 
R 5 HOH A 8 2008 2008 HOH HOH . 
R 5 HOH A 9 2009 2009 HOH HOH . 
R 5 HOH A 10 2010 2010 HOH HOH . 
R 5 HOH A 11 2011 2011 HOH HOH . 
R 5 HOH A 12 2012 2012 HOH HOH . 
R 5 HOH A 13 2013 2013 HOH HOH . 
R 5 HOH A 14 2014 2014 HOH HOH . 
R 5 HOH A 15 2015 2015 HOH HOH . 
R 5 HOH A 16 2016 2016 HOH HOH . 
R 5 HOH A 17 2017 2017 HOH HOH . 
R 5 HOH A 18 2018 2018 HOH HOH . 
R 5 HOH A 19 2019 2019 HOH HOH . 
S 5 HOH B 1 2001 2001 HOH HOH . 
S 5 HOH B 2 2002 2002 HOH HOH . 
S 5 HOH B 3 2003 2003 HOH HOH . 
S 5 HOH B 4 2004 2004 HOH HOH . 
S 5 HOH B 5 2005 2005 HOH HOH . 
S 5 HOH B 6 2006 2006 HOH HOH . 
S 5 HOH B 7 2007 2007 HOH HOH . 
S 5 HOH B 8 2008 2008 HOH HOH . 
S 5 HOH B 9 2009 2009 HOH HOH . 
S 5 HOH B 10 2010 2010 HOH HOH . 
S 5 HOH B 11 2011 2011 HOH HOH . 
S 5 HOH B 12 2012 2012 HOH HOH . 
S 5 HOH B 13 2013 2013 HOH HOH . 
S 5 HOH B 14 2014 2014 HOH HOH . 
S 5 HOH B 15 2015 2015 HOH HOH . 
S 5 HOH B 16 2016 2016 HOH HOH . 
S 5 HOH B 17 2017 2017 HOH HOH . 
S 5 HOH B 18 2018 2018 HOH HOH . 
S 5 HOH B 19 2019 2019 HOH HOH . 
S 5 HOH B 20 2020 2020 HOH HOH . 
S 5 HOH B 21 2021 2021 HOH HOH . 
S 5 HOH B 22 2022 2022 HOH HOH . 
S 5 HOH B 23 2023 2023 HOH HOH . 
S 5 HOH B 24 2024 2024 HOH HOH . 
S 5 HOH B 25 2025 2025 HOH HOH . 
S 5 HOH B 26 2026 2026 HOH HOH . 
S 5 HOH B 27 2027 2027 HOH HOH . 
S 5 HOH B 28 2028 2028 HOH HOH . 
S 5 HOH B 29 2029 2029 HOH HOH . 
S 5 HOH B 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . I 4 -4.097 -12.92 -4.726 1 54.1 ? O22 78N 1497 A 1 
HETATM 2 C C19 78N . . . I 4 -5.325 -12.451 -4.152 1 54.1 ? C19 78N 1497 A 1 
HETATM 3 C C18 78N . . . I 4 -5.392 -10.928 -4.229 1 54.1 ? C18 78N 1497 A 1 
HETATM 4 O O20 78N . . . I 4 -5.298 -10.496 -5.593 1 54.1 ? O20 78N 1497 A 1 
HETATM 5 C C17 78N . . . I 4 -6.705 -10.454 -3.614 1 54.1 ? C17 78N 1497 A 1 
HETATM 6 O O16 78N . . . I 4 -6.711 -9.032 -3.548 1 54.1 ? O16 78N 1497 A 1 
HETATM 7 C C8 78N . . . I 4 -6.687 -8.383 -2.246 1 54.1 ? C8 78N 1497 A 1 
HETATM 8 O O15 78N . . . I 4 -7.036 -9.014 -1.26 1 54.1 ? O15 78N 1497 A 1 
HETATM 9 C C7 78N . . . I 4 -6.22 -6.952 -2.13 1 54.1 ? C7 78N 1497 A 1 
HETATM 10 C C6 78N . . . I 4 -6.21 -6.328 -3.521 1 54.1 ? C6 78N 1497 A 1 
HETATM 11 C C5 78N . . . I 4 -5.427 -5.022 -3.523 1 54.1 ? C5 78N 1497 A 1 
HETATM 12 C C4 78N . . . I 4 -6.226 -3.884 -4.149 1 54.1 ? C4 78N 1497 A 1 
HETATM 13 C C3 78N . . . I 4 -5.866 -2.57 -3.469 1 54.1 ? C3 78N 1497 A 1 
HETATM 14 C C2 78N . . . I 4 -5.729 -2.818 -1.985 1 54.1 ? C2 78N 1497 A 1 
HETATM 15 C C1 78N . . . I 4 -5.019 -1.984 -1.234 1 54.1 ? C1 78N 1497 A 1 
HETATM 16 C C9 78N . . . I 4 -4.364 -0.797 -1.893 1 54.1 ? C9 78N 1497 A 1 
HETATM 17 C C10 78N . . . I 4 -3.661 0.075 -0.863 1 54.1 ? C10 78N 1497 A 1 
HETATM 18 C C11 78N . . . I 4 -2.882 1.179 -1.567 1 54.1 ? C11 78N 1497 A 1 
HETATM 19 C C12 78N . . . I 4 -3.687 1.761 -2.727 1 54.1 ? C12 78N 1497 A 1 
HETATM 20 C C13 78N . . . I 4 -2.945 2.906 -3.409 1 54.1 ? C13 78N 1497 A 1 
HETATM 21 C C15 78N . . . I 4 -2.315 3.927 -5.6 1 54.1 ? C15 78N 1497 A 1 
HETATM 22 C C14 78N . . . I 4 -3.162 2.877 -4.917 1 54.1 ? C14 78N 1497 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#