data_4AZV # _model_server_result.job_id -z2vilUsOgCIcmh4DSY-8w _model_server_result.datetime_utc '2024-11-08 19:47:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4azv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1474}' # _entry.id 4AZV # _exptl.entry_id 4AZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AZV _cell.length_a 159.32 _cell.length_b 159.32 _cell.length_c 159.32 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 3 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 4 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 8 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id O3 _struct_conn.ptnr1_label_comp_id SO4 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SO4 _struct_conn.ptnr1_auth_seq_id 1477 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id TYR _struct_conn.ptnr2_label_seq_id 182 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TYR _struct_conn.ptnr2_auth_seq_id 169 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.556 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4AZV _atom_sites.fract_transf_matrix[1][1] 0.006277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 1474 1474 SAM SAM . C 3 SO4 A 1 1475 1475 SO4 SO4 . D 3 SO4 A 1 1476 1476 SO4 SO4 . E 3 SO4 A 1 1477 1477 SO4 SO4 . F 3 SO4 A 1 1478 1478 SO4 SO4 . G 4 CL A 1 1479 1479 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 9.564 -36.871 -19.419 1 76.22 ? N SAM 1474 A 1 HETATM 2 C CA SAM . . . B 2 10.085 -36.468 -20.719 1 76.36 ? CA SAM 1474 A 1 HETATM 3 C C SAM . . . B 2 11.604 -36.629 -20.817 1 77.16 ? C SAM 1474 A 1 HETATM 4 O O SAM . . . B 2 12.379 -36.246 -19.946 1 77.21 ? O SAM 1474 A 1 HETATM 5 O OXT SAM . . . B 2 12.145 -37.152 -21.784 1 73.69 ? OXT SAM 1474 A 1 HETATM 6 C CB SAM . . . B 2 9.712 -35.021 -20.995 1 76.05 ? CB SAM 1474 A 1 HETATM 7 C CG SAM . . . B 2 10.258 -33.999 -20.006 1 78.07 ? CG SAM 1474 A 1 HETATM 8 S SD SAM . . . B 2 9.672 -32.364 -20.47 1 78.71 ? SD SAM 1474 A 1 HETATM 9 C CE SAM . . . B 2 10.881 -31.271 -19.701 1 97.3 ? CE SAM 1474 A 1 HETATM 10 C C5' SAM . . . B 2 8.233 -32.152 -19.399 1 80.89 ? C5' SAM 1474 A 1 HETATM 11 C C4' SAM . . . B 2 7.002 -32.824 -19.979 1 77.07 ? C4' SAM 1474 A 1 HETATM 12 O O4' SAM . . . B 2 6.034 -32.934 -18.974 1 79.29 ? O4' SAM 1474 A 1 HETATM 13 C C3' SAM . . . B 2 6.366 -32.042 -21.1 1 77.1 ? C3' SAM 1474 A 1 HETATM 14 O O3' SAM . . . B 2 6.045 -32.936 -22.136 1 77.18 ? O3' SAM 1474 A 1 HETATM 15 C C2' SAM . . . B 2 5.117 -31.431 -20.496 1 77.99 ? C2' SAM 1474 A 1 HETATM 16 O O2' SAM . . . B 2 4.074 -31.35 -21.433 1 77.87 ? O2' SAM 1474 A 1 HETATM 17 C C1' SAM . . . B 2 4.801 -32.399 -19.369 1 77.42 ? C1' SAM 1474 A 1 HETATM 18 N N9 SAM . . . B 2 4.184 -31.843 -18.161 1 77.49 ? N9 SAM 1474 A 1 HETATM 19 C C8 SAM . . . B 2 4.62 -30.795 -17.403 1 80.01 ? C8 SAM 1474 A 1 HETATM 20 N N7 SAM . . . B 2 3.757 -30.637 -16.375 1 80.91 ? N7 SAM 1474 A 1 HETATM 21 C C5 SAM . . . B 2 2.806 -31.58 -16.467 1 76.84 ? C5 SAM 1474 A 1 HETATM 22 C C6 SAM . . . B 2 1.711 -31.861 -15.698 1 78.72 ? C6 SAM 1474 A 1 HETATM 23 N N6 SAM . . . B 2 1.418 -31.148 -14.619 1 78.61 ? N6 SAM 1474 A 1 HETATM 24 N N1 SAM . . . B 2 0.925 -32.907 -16.088 1 78.21 ? N1 SAM 1474 A 1 HETATM 25 C C2 SAM . . . B 2 1.194 -33.689 -17.183 1 78.3 ? C2 SAM 1474 A 1 HETATM 26 N N3 SAM . . . B 2 2.287 -33.391 -17.947 1 76.16 ? N3 SAM 1474 A 1 HETATM 27 C C4 SAM . . . B 2 3.068 -32.354 -17.581 1 75.11 ? C4 SAM 1474 A 1 HETATM 28 H HN1 SAM . . . B 2 9.494 -37.723 -19.319 1 83.02 ? HN1 SAM 1474 A 1 HETATM 29 H HA SAM . . . B 2 9.677 -37.026 -21.414 1 83.16 ? HA SAM 1474 A 1 HETATM 30 H HB1 SAM . . . B 2 10.066 -34.763 -21.994 1 81.78 ? HB1 SAM 1474 A 1 HETATM 31 H HB2 SAM . . . B 2 8.625 -34.946 -21.01 1 81.78 ? HB2 SAM 1474 A 1 HETATM 32 H HG1 SAM . . . B 2 11.348 -34.019 -20.016 1 83.8 ? HG1 SAM 1474 A 1 HETATM 33 H HG2 SAM . . . B 2 9.921 -34.242 -18.998 1 83.8 ? HG2 SAM 1474 A 1 HETATM 34 H "H5'1" SAM . . . B 2 8.035 -31.089 -19.266 1 86.62 ? "H5'1" SAM 1474 A 1 HETATM 35 H "H5'2" SAM . . . B 2 8.447 -32.576 -18.418 1 86.62 ? "H5'2" SAM 1474 A 1 HETATM 36 H H4' SAM . . . B 2 7.276 -33.813 -20.346 1 82.8 ? H4' SAM 1474 A 1 HETATM 37 H H3' SAM . . . B 2 7.042 -31.259 -21.444 1 82.83 ? H3' SAM 1474 A 1 HETATM 38 H HO3' SAM . . . B 2 5.072 -32.972 -22.246 1 82.91 ? HO3' SAM 1474 A 1 HETATM 39 H H2' SAM . . . B 2 5.35 -30.449 -20.083 1 83.72 ? H2' SAM 1474 A 1 HETATM 40 H HO2' SAM . . . B 2 3.344 -31.945 -21.162 1 83.6 ? HO2' SAM 1474 A 1 HETATM 41 H H1' SAM . . . B 2 4.171 -33.194 -19.766 1 83.15 ? H1' SAM 1474 A 1 HETATM 42 H H8 SAM . . . B 2 5.492 -30.173 -17.61 1 85.74 ? H8 SAM 1474 A 1 HETATM 43 H HN61 SAM . . . B 2 2.013 -30.372 -14.346 1 84.34 ? HN61 SAM 1474 A 1 HETATM 44 H HN62 SAM . . . B 2 0.601 -31.381 -14.063 1 84.34 ? HN62 SAM 1474 A 1 HETATM 45 H H2 SAM . . . B 2 0.437 -34.378 -17.559 1 84.03 ? H2 SAM 1474 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #