data_4AZW
#
_model_server_result.job_id            4ORDQKDDHdtNxjd0PpE1ww 
_model_server_result.datetime_utc      '2024-11-04 23:08:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4azw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1450}' 
#
_entry.id    4AZW 
#
_exptl.entry_id    4AZW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AZW 
_cell.length_a            40.67 
_cell.length_b            89.6 
_cell.length_c            135.46 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AZW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 287 A GLU 274 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc2 A OD1 ASN 369 A ASN 356 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc3 A OD2 ASP 382 A ASP 369 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc4 A OD1 ASP 382 A ASP 369 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc5 A OD2 ASP 382 A ASP 369 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc6 B O2G ATP . A ATP 1450 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc7 B O1A ATP . A ATP 1450 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? 
metalc ? metalc8 B O3G ATP . A ATP 1450 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc9 B O1B ATP . A ATP 1450 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc10 D MG MG . A MG 1452 1_555 F O HOH . A HOH 2069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc11 E MG MG . A MG 1453 1_555 F O HOH . A HOH 2055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4AZW 
_atom_sites.fract_transf_matrix[1][1]    0.024588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 1450 1450 ATP ATP . 
C 3 SAM A 1 1451 1451 SAM SAM . 
D 4 MG A 1 1452 1452 MG MG . 
E 4 MG A 1 1453 1453 MG MG . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
F 5 HOH A 29 2029 2029 HOH HOH . 
F 5 HOH A 30 2030 2030 HOH HOH . 
F 5 HOH A 31 2031 2031 HOH HOH . 
F 5 HOH A 32 2032 2032 HOH HOH . 
F 5 HOH A 33 2033 2033 HOH HOH . 
F 5 HOH A 34 2034 2034 HOH HOH . 
F 5 HOH A 35 2035 2035 HOH HOH . 
F 5 HOH A 36 2036 2036 HOH HOH . 
F 5 HOH A 37 2037 2037 HOH HOH . 
F 5 HOH A 38 2038 2038 HOH HOH . 
F 5 HOH A 39 2039 2039 HOH HOH . 
F 5 HOH A 40 2040 2040 HOH HOH . 
F 5 HOH A 41 2041 2041 HOH HOH . 
F 5 HOH A 42 2042 2042 HOH HOH . 
F 5 HOH A 43 2043 2043 HOH HOH . 
F 5 HOH A 44 2044 2044 HOH HOH . 
F 5 HOH A 45 2045 2045 HOH HOH . 
F 5 HOH A 46 2046 2046 HOH HOH . 
F 5 HOH A 47 2047 2047 HOH HOH . 
F 5 HOH A 48 2048 2048 HOH HOH . 
F 5 HOH A 49 2049 2049 HOH HOH . 
F 5 HOH A 50 2050 2050 HOH HOH . 
F 5 HOH A 51 2051 2051 HOH HOH . 
F 5 HOH A 52 2052 2052 HOH HOH . 
F 5 HOH A 53 2053 2053 HOH HOH . 
F 5 HOH A 54 2054 2054 HOH HOH . 
F 5 HOH A 55 2055 2055 HOH HOH . 
F 5 HOH A 56 2056 2056 HOH HOH . 
F 5 HOH A 57 2057 2057 HOH HOH . 
F 5 HOH A 58 2058 2058 HOH HOH . 
F 5 HOH A 59 2059 2059 HOH HOH . 
F 5 HOH A 60 2060 2060 HOH HOH . 
F 5 HOH A 61 2061 2061 HOH HOH . 
F 5 HOH A 62 2062 2062 HOH HOH . 
F 5 HOH A 63 2063 2063 HOH HOH . 
F 5 HOH A 64 2064 2064 HOH HOH . 
F 5 HOH A 65 2065 2065 HOH HOH . 
F 5 HOH A 66 2066 2066 HOH HOH . 
F 5 HOH A 67 2067 2067 HOH HOH . 
F 5 HOH A 68 2068 2068 HOH HOH . 
F 5 HOH A 69 2069 2069 HOH HOH . 
F 5 HOH A 70 2070 2070 HOH HOH . 
F 5 HOH A 71 2071 2071 HOH HOH . 
F 5 HOH A 72 2072 2072 HOH HOH . 
F 5 HOH A 73 2073 2073 HOH HOH . 
F 5 HOH A 74 2074 2074 HOH HOH . 
F 5 HOH A 75 2075 2075 HOH HOH . 
F 5 HOH A 76 2076 2076 HOH HOH . 
F 5 HOH A 77 2077 2077 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 -8.901 18.182 -10.481 1 36.13 ? PG ATP 1450 A 1 
HETATM 2 O O1G ATP . . . B 2 -9.383 19.582 -10.239 1 36.38 ? O1G ATP 1450 A 1 
HETATM 3 O O2G ATP . . . B 2 -9.474 17.128 -9.53 1 32.28 ? O2G ATP 1450 A 1 
HETATM 4 O O3G ATP . . . B 2 -7.394 18.22 -10.621 1 35.41 ? O3G ATP 1450 A 1 
HETATM 5 P PB ATP . . . B 2 -8.952 17.085 -13.231 1 37.18 ? PB ATP 1450 A 1 
HETATM 6 O O1B ATP . . . B 2 -7.545 16.623 -12.956 1 36.47 ? O1B ATP 1450 A 1 
HETATM 7 O O2B ATP . . . B 2 -9.271 17.93 -14.428 1 32.11 ? O2B ATP 1450 A 1 
HETATM 8 O O3B ATP . . . B 2 -9.571 17.837 -11.932 1 35.52 ? O3B ATP 1450 A 1 
HETATM 9 P PA ATP . . . B 2 -9.887 14.38 -12.841 1 31.72 ? PA ATP 1450 A 1 
HETATM 10 O O1A ATP . . . B 2 -9.99 14.577 -11.352 1 31.29 ? O1A ATP 1450 A 1 
HETATM 11 O O2A ATP . . . B 2 -8.901 13.424 -13.399 1 31.33 ? O2A ATP 1450 A 1 
HETATM 12 O O3A ATP . . . B 2 -9.835 15.781 -13.61 1 34.73 ? O3A ATP 1450 A 1 
HETATM 13 O O5' ATP . . . B 2 -11.285 13.817 -13.396 1 31.78 ? O5' ATP 1450 A 1 
HETATM 14 C C5' ATP . . . B 2 -12.49 14.509 -13.18 1 31.58 ? C5' ATP 1450 A 1 
HETATM 15 C C4' ATP . . . B 2 -13.58 13.582 -12.682 1 33.08 ? C4' ATP 1450 A 1 
HETATM 16 O O4' ATP . . . B 2 -13.943 12.571 -13.659 1 32.36 ? O4' ATP 1450 A 1 
HETATM 17 C C3' ATP . . . B 2 -13.129 12.825 -11.442 1 33.45 ? C3' ATP 1450 A 1 
HETATM 18 O O3' ATP . . . B 2 -13.324 13.519 -10.228 1 37.32 ? O3' ATP 1450 A 1 
HETATM 19 C C2' ATP . . . B 2 -13.976 11.586 -11.536 1 32.21 ? C2' ATP 1450 A 1 
HETATM 20 O O2' ATP . . . B 2 -15.289 11.874 -11.121 1 28.58 ? O2' ATP 1450 A 1 
HETATM 21 C C1' ATP . . . B 2 -14.055 11.293 -13.013 1 32.18 ? C1' ATP 1450 A 1 
HETATM 22 N N9 ATP . . . B 2 -13.013 10.4 -13.592 1 31.77 ? N9 ATP 1450 A 1 
HETATM 23 C C8 ATP . . . B 2 -11.879 10.805 -14.196 1 33.06 ? C8 ATP 1450 A 1 
HETATM 24 N N7 ATP . . . B 2 -11.201 9.737 -14.727 1 34.42 ? N7 ATP 1450 A 1 
HETATM 25 C C5 ATP . . . B 2 -11.965 8.647 -14.478 1 31.29 ? C5 ATP 1450 A 1 
HETATM 26 C C6 ATP . . . B 2 -11.859 7.224 -14.747 1 32.28 ? C6 ATP 1450 A 1 
HETATM 27 N N6 ATP . . . B 2 -10.79 6.75 -15.391 1 33 ? N6 ATP 1450 A 1 
HETATM 28 N N1 ATP . . . B 2 -12.833 6.409 -14.311 1 36.16 ? N1 ATP 1450 A 1 
HETATM 29 C C2 ATP . . . B 2 -13.933 6.873 -13.664 1 34.02 ? C2 ATP 1450 A 1 
HETATM 30 N N3 ATP . . . B 2 -14.078 8.163 -13.384 1 32.92 ? N3 ATP 1450 A 1 
HETATM 31 C C4 ATP . . . B 2 -13.126 9.074 -13.722 1 30.06 ? C4 ATP 1450 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#