data_4AZW # _model_server_result.job_id biqTbqi6didGrRXOpeerAA _model_server_result.datetime_utc '2024-11-04 23:04:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4azw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1451}' # _entry.id 4AZW # _exptl.entry_id 4AZW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AZW _cell.length_a 40.67 _cell.length_b 89.6 _cell.length_c 135.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AZW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 287 A GLU 274 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OD1 ASN 369 A ASN 356 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc3 A OD2 ASP 382 A ASP 369 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 A OD1 ASP 382 A ASP 369 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 A OD2 ASP 382 A ASP 369 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 B O2G ATP . A ATP 1450 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc7 B O1A ATP . A ATP 1450 1_555 D MG MG . A MG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc8 B O3G ATP . A ATP 1450 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc9 B O1B ATP . A ATP 1450 1_555 E MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 D MG MG . A MG 1452 1_555 F O HOH . A HOH 2069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc11 E MG MG . A MG 1453 1_555 F O HOH . A HOH 2055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 326 n n N HN1 SAM sing 327 n n N HN2 SAM sing 328 n n CA C SAM sing 329 n n CA CB SAM sing 330 n n CA HA SAM sing 331 n n C O SAM doub 332 n n C OXT SAM sing 333 n n CB CG SAM sing 334 n n CB HB1 SAM sing 335 n n CB HB2 SAM sing 336 n n CG SD SAM sing 337 n n CG HG1 SAM sing 338 n n CG HG2 SAM sing 339 n n SD CE SAM sing 340 n n SD C5' SAM sing 341 n n CE HE1 SAM sing 342 n n CE HE2 SAM sing 343 n n CE HE3 SAM sing 344 n n C5' C4' SAM sing 345 n n C5' "H5'1" SAM sing 346 n n C5' "H5'2" SAM sing 347 n n C4' O4' SAM sing 348 n n C4' C3' SAM sing 349 n n C4' H4' SAM sing 350 n n O4' C1' SAM sing 351 n n C3' O3' SAM sing 352 n n C3' C2' SAM sing 353 n n C3' H3' SAM sing 354 n n O3' HO3' SAM sing 355 n n C2' O2' SAM sing 356 n n C2' C1' SAM sing 357 n n C2' H2' SAM sing 358 n n O2' HO2' SAM sing 359 n n C1' N9 SAM sing 360 n n C1' H1' SAM sing 361 n n N9 C8 SAM sing 362 n y N9 C4 SAM sing 363 n y C8 N7 SAM doub 364 n y C8 H8 SAM sing 365 n n N7 C5 SAM sing 366 n y C5 C6 SAM sing 367 n y C5 C4 SAM doub 368 n y C6 N6 SAM sing 369 n n C6 N1 SAM doub 370 n y N6 HN61 SAM sing 371 n n N6 HN62 SAM sing 372 n n N1 C2 SAM sing 373 n y C2 N3 SAM doub 374 n y C2 H2 SAM sing 375 n n N3 C4 SAM sing 376 n y # _atom_sites.entry_id 4AZW _atom_sites.fract_transf_matrix[1][1] 0.024588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1450 1450 ATP ATP . C 3 SAM A 1 1451 1451 SAM SAM . D 4 MG A 1 1452 1452 MG MG . E 4 MG A 1 1453 1453 MG MG . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 -25.739 28.247 -45.737 1 54.73 ? N SAM 1451 A 1 HETATM 2 C CA SAM . . . C 3 -25.29 28.833 -47.01 1 53.99 ? CA SAM 1451 A 1 HETATM 3 C C SAM . . . C 3 -23.801 28.883 -47.085 1 50.44 ? C SAM 1451 A 1 HETATM 4 O O SAM . . . C 3 -23.155 29.24 -46.072 1 53.98 ? O SAM 1451 A 1 HETATM 5 O OXT SAM . . . C 3 -23.245 28.599 -48.167 1 53.03 ? OXT SAM 1451 A 1 HETATM 6 C CB SAM . . . C 3 -25.79 30.261 -47.308 1 52.64 ? CB SAM 1451 A 1 HETATM 7 C CG SAM . . . C 3 -25.509 31.36 -46.276 1 55.82 ? CG SAM 1451 A 1 HETATM 8 S SD SAM . . . C 3 -26.309 32.792 -46.667 1 60.75 ? SD SAM 1451 A 1 HETATM 9 C CE SAM . . . C 3 -25.255 34.033 -46.273 1 72.75 ? CE SAM 1451 A 1 HETATM 10 C C5' SAM . . . C 3 -27.708 33.061 -45.786 1 50.23 ? C5' SAM 1451 A 1 HETATM 11 C C4' SAM . . . C 3 -28.916 32.309 -46.33 1 48.99 ? C4' SAM 1451 A 1 HETATM 12 O O4' SAM . . . C 3 -29.863 32.186 -45.275 1 45.99 ? O4' SAM 1451 A 1 HETATM 13 C C3' SAM . . . C 3 -29.649 33.038 -47.452 1 46.25 ? C3' SAM 1451 A 1 HETATM 14 O O3' SAM . . . C 3 -29.845 32.115 -48.505 1 43.6 ? O3' SAM 1451 A 1 HETATM 15 C C2' SAM . . . C 3 -30.949 33.523 -46.838 1 45.29 ? C2' SAM 1451 A 1 HETATM 16 O O2' SAM . . . C 3 -32.06 33.423 -47.716 1 51.39 ? O2' SAM 1451 A 1 HETATM 17 C C1' SAM . . . C 3 -31.148 32.582 -45.676 1 42.48 ? C1' SAM 1451 A 1 HETATM 18 N N9 SAM . . . C 3 -31.71 33.141 -44.444 1 40.08 ? N9 SAM 1451 A 1 HETATM 19 C C8 SAM . . . C 3 -31.306 34.203 -43.725 1 39.76 ? C8 SAM 1451 A 1 HETATM 20 N N7 SAM . . . C 3 -32.094 34.354 -42.613 1 38.92 ? N7 SAM 1451 A 1 HETATM 21 C C5 SAM . . . C 3 -32.991 33.369 -42.627 1 37.14 ? C5 SAM 1451 A 1 HETATM 22 C C6 SAM . . . C 3 -34.086 32.925 -41.785 1 40.27 ? C6 SAM 1451 A 1 HETATM 23 N N6 SAM . . . C 3 -34.408 33.605 -40.66 1 45.12 ? N6 SAM 1451 A 1 HETATM 24 N N1 SAM . . . C 3 -34.79 31.851 -42.163 1 38.1 ? N1 SAM 1451 A 1 HETATM 25 C C2 SAM . . . C 3 -34.5 31.158 -43.261 1 37.63 ? C2 SAM 1451 A 1 HETATM 26 N N3 SAM . . . C 3 -33.519 31.486 -44.076 1 39.56 ? N3 SAM 1451 A 1 HETATM 27 C C4 SAM . . . C 3 -32.746 32.578 -43.823 1 41.25 ? C4 SAM 1451 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #